Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007167

Physical Location & Seq

Genomic Coordinates Forward (+)

25254496 .. 25256057

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGCGTATAAAACAGCTCAGCTTGGACTATGACCTTTTAAAGCAGGAAAAATATGACATCTCTATGAAGTTAGATCGAAACCAAGAACGAATACGAACAGAGATGGAAAATGAGCGAGCGGGTTATATGGCTACTATAAAAGAGCTTGAATCTCAGTTAGAGAGATCAGAAGAAACAATTGAGAAGCAAGCACATGAATTCTCAGAATGTTTGATGTCCATTCAGGAACTTGAAAGTGAACTTAAGTCTTTGGAGATGGATCGCGAGATGCAGGCCAAGGGATTTGAAGATAAACTCGAGGAAGTGATGAATGCCAAAGTTGAGCAGGAATACAGGGCCATCCAAGCCGAGGAAGCATTGAAGAAGACGAGGTCCAATAATTCTGATACGGTTGAGCACCTTCAAGAGGAATTTAGAAAGCTTTCTGTGGAAATGACGTCTAAGGTTGATGAAAATGAGAAACAGGCCACAAAAGCGATGACAGAGGCTACTGAACTGCGCCGGCAGAACAGAATTCTGGAAGAGATGCTCCAGAAAGCCAATGAAGAGTTAGAGCTGATTAAGGGCGAGACTGAAGTAAAATTGCAAGATCTTGTCAACCAGATTGAGGTGAAAGCAAAACGTATAGAACAGATGTCTTCGGAACTAGACAATACATCAAAGCAACTTGAAAAAGTAAAGAGGCATGAGGAAGAAGAGCACGAAGCTCTCTCAATGAAAATCCAAATGCTCGAAGCTGAGATAGAAAGGCTCACAGACGAGAATTCTAACTCCAGACAGGAGAAAGATAAATTGAGAGGAGATTTGGAACAAATGAAGAAATTAATTGCAGAAAATGAGATGCTGATCCAGTGTCTGAGTGTTGAAAAGGAAAATTTGGAGAAAAGATTTGCTTCAGCAAAGCGGGAAACAGAGAAAACGCATGAAGAACTTACTGACATTAGATCTTTGAAAGATGAGAAGGAAACGACAAATGCTTCTCTGAACTCCGAAGTGGAAAACCTGAAGACCCAGCACAGCAAGTTGTTGGATACGTTGAAAAAAGAAGCGTTGGCAAAAGAAAGCTTGAAGAAACAAATATCTCAATTACAAGCTGAGGTACAAAAGAAAGTCAGCAACTCAAAGAAAACGGTTAAGAATACCAATGGACAAAGGAAAGTAGAAGATTGCTCGGAGAAACAGTTGAAAGCCACCATTGATGAGAATAAGTATACAGATTTGATGACCGAATTGACATTGCTGAAAGAAAGAAACAAATCTATGGAAGACGAACTGAAGGAAATGGAAGAAAGATATTCTGAGATAAGTCTCAGATTCGCAGAGGTTGAAGGTGAAAGGCAACAACTTGTAATGACCGTGCGTAACCTCAAAAACAGCAAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

463

Amino Acids

54.35

Weight (kDa)

5.15

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52280
fragaria_vesca	FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461
malus_domestica	MD01G1200700.v1.1 MD07G1268600.v1.1
prunus_persica	Prupe.2G294200_v2.0.a1 Prupe.2G294200_v2.0.a1
pyrus_communis	pycom01g21050 pycom07g24610 pycom07g24620
rosa_chinensis	RchiOBHm_Chr1g0377241
rosa_laevigata	RLG00000026532
rosa_multiflora	Rmu_sc0009231.1_g000002 Rmu_sc0010600.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281350
rosa_rugosa	Rorug01G0402600 Rorug01G0402600
rosa_samantha	Rh1AG419800 Rh1BG378800 Rh1CG392800 Rh1DG409400
rosa_wichuraiana	Rw1G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	1211
AccII	CGCG	1 cut(s)	264
AciI	CCGC	2 cut(s)	119, 904
AclWI	GGATC	2 cut(s)	267, 841
AcsI	RAATTY	5 cut(s)	197, 410, 513, 763, 874
AcuI	CTGAAG	4 cut(s)	594, 879, 1025, 1295
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	1 cut(s)	1101
AfiI	CCNNNNNNNGG	3 cut(s)	349, 406, 607
AflII	CTTAAG	1 cut(s)	242
AluBI	AGCT	9 cut(s)	16, 21, 145, 421, 556, 707, 737, 1065, 1094
AluI	AGCT	9 cut(s)	16, 21, 145, 421, 556, 707, 737, 1065, 1094
Alw21I	GWGCWC	2 cut(s)	399, 702
Alw26I	GTCTC	2 cut(s)	563, 1313
AlwI	GGATC	2 cut(s)	267, 841
AlwNI	CAGNNNCTG	1 cut(s)	856
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	3 cut(s)	273, 336, 465
ApoI	RAATTY	5 cut(s)	197, 410, 513, 763, 874
AseI	ATTAAT	1 cut(s)	824
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	336, 372
AsuHPI	GGTGA	2 cut(s)	622, 1343
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	372
BbsI	GAAGAC	4 cut(s)	371, 630, 1013, 1272
Bbv12I	GWGCWC	2 cut(s)	399, 702
BbvCI	CCTCAGC	1 cut(s)	1095
BccI	CCATC	3 cut(s)	97, 250, 347
BciVI	GTATCC	1 cut(s)	1024
BcoDI	GTCTC	2 cut(s)	563, 1313
BfaI	CTAG	2 cut(s)	647, 1387
BfrI	CTTAAG	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	1024
BglII	AGATCT	2 cut(s)	589, 944
BlpI	GCTNAGC	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	336, 372
BmsI	GCATC	3 cut(s)	258, 516, 831
BpiI	GAAGAC	4 cut(s)	371, 630, 1013, 1272
BpmI	CTGGAG	2 cut(s)	515, 757
Bpu10I	CCTNAGC	1 cut(s)	1095
Bpu1102I	GCTNAGC	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	845
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	276, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 406, 607
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	1235
Bse8I	GATNNNNATC	1 cut(s)	845
BseDI	CCNNGG	2 cut(s)	276, 348
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	3 cut(s)	349, 406, 607
BseMI	GCAATG	1 cut(s)	1235
BseMII	CTCAG	8 cut(s)	31, 167, 216, 729, 848, 1086, 1290, 1324
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	1 cut(s)	813
BseYI	CCCAGC	1 cut(s)	1011
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	275, 338, 467
BsiHKAI	GWGCWC	2 cut(s)	399, 702
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	502
BslI	CCNNNNNNNGG	3 cut(s)	349, 406, 607
BsmAI	GTCTC	2 cut(s)	563, 1313
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	275, 338, 467
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	399, 702
Bsp143I	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
Bsp1720I	GCTNAGC	1 cut(s)	17
Bsp68I	TCGCGA	1 cut(s)	264
BspACI	CCGC	2 cut(s)	119, 904
BspANI	GGCC	3 cut(s)	275, 338, 467
BspCNI	CTCAG	8 cut(s)	30, 166, 215, 730, 849, 1087, 1291, 1323
BspFNI	CGCG	1 cut(s)	264
BspPI	GGATC	2 cut(s)	267, 841
BspQI	GCTCTTC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	1235
BsrFI	RCCGGY	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	850
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	2 cut(s)	276, 348
BssMI	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
BssNAI	GTATAC	1 cut(s)	1212
BssNI	GRCGYC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	276
Bst1107I	GTATAC	1 cut(s)	1212
Bst4CI	ACNGT	4 cut(s)	391, 1132, 1182, 1357
Bst6I	CTCTTC	3 cut(s)	516, 540, 690
BstACI	GRCGYC	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	4 cut(s)	117, 189, 273, 503
BstDEI	CTNAG	9 cut(s)	17, 153, 202, 441, 738, 857, 1095, 1299, 1310
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	6 cut(s)	76, 167, 262, 592, 849, 947
BstMAI	GTCTC	2 cut(s)	563, 1313
BstMBI	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 353, 473
BstUI	CGCG	1 cut(s)	264
BstV2I	GAAGAC	4 cut(s)	371, 630, 1013, 1272
BstX2I	RGATCY	2 cut(s)	589, 944
BstYI	RGATCY	2 cut(s)	589, 944
BstZ17I	GTATAC	1 cut(s)	1212
BsuI	GTATCC	1 cut(s)	1024
BsuRI	GGCC	3 cut(s)	275, 338, 467
BtgZI	GCGATG	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	857
BtuMI	TCGCGA	1 cut(s)	264
Cac8I	GCNNGC	4 cut(s)	117, 189, 273, 503
CaiI	CAGNNNCTG	1 cut(s)	856
CfoI	GCGC	1 cut(s)	501
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	336, 372
Csp6I	GTAC	1 cut(s)	1100
CviAII	CATG	3 cut(s)	194, 686, 923
CviQI	GTAC	1 cut(s)	1100
DdeI	CTNAG	9 cut(s)	17, 153, 202, 441, 738, 857, 1095, 1299, 1310
DpnI	GATC	6 cut(s)	75, 166, 261, 591, 848, 946
DpnII	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	516, 540, 690
EarI	CTCTTC	3 cut(s)	516, 540, 690
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	4 cut(s)	594, 879, 1025, 1295
Eco88I	CYCGRG	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRI	GAATTC	3 cut(s)	197, 513, 763
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	197, 689, 926
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FatI	CATG	3 cut(s)	193, 685, 922
FauI	CCCGC	2 cut(s)	112, 897
FblI	GTMKAC	1 cut(s)	1211
FokI	GGATG	1 cut(s)	326
FspBI	CTAG	2 cut(s)	647, 1387
GlaI	GCGC	1 cut(s)	500
GsaI	CCCAGC	1 cut(s)	1015
GsuI	CTGGAG	2 cut(s)	515, 757
HaeIII	GGCC	3 cut(s)	275, 338, 467
HapII	CCGG	1 cut(s)	502
HhaI	GCGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	197, 689, 926
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	2 cut(s)	419, 1063
HinfI	GANTC	2 cut(s)	149, 1314
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	2 cut(s)	622, 1343
Hpy166II	GTNNAC	3 cut(s)	239, 598, 1212
Hpy188III	TCNNGA	6 cut(s)	224, 263, 404, 518, 532, 774
Hpy8I	GTNNAC	3 cut(s)	239, 598, 1212
HpyAV	CCTTC	4 cut(s)	410, 955, 1270, 1322
HpyCH4III	ACNGT	4 cut(s)	391, 1132, 1182, 1357
HpyCH4IV	ACGT	3 cut(s)	437, 622, 1034
HpyCH4V	TGCA	3 cut(s)	271, 586, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 353, 473
HpyF3I	CTNAG	9 cut(s)	17, 153, 202, 441, 738, 857, 1095, 1299, 1310
HpySE526I	ACGT	3 cut(s)	437, 622, 1034
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	3 cut(s)	197, 689, 926
HspAI	GCGC	1 cut(s)	499
KroI	GCCGGC	1 cut(s)	501
KroNI	GCCGGC	1 cut(s)	503
Kzo9I	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	534
LweI	GCATC	3 cut(s)	258, 516, 831
MaeI	CTAG	2 cut(s)	647, 1387
MaeII	ACGT	3 cut(s)	437, 622, 1034
MaeIII	GTNAC	1 cut(s)	1361
MalI	GATC	6 cut(s)	75, 166, 261, 591, 848, 946
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	2 cut(s)	589, 944
MhlI	GDGCHC	2 cut(s)	399, 702
MmeI	TCCRAC	1 cut(s)	1008
MroNI	GCCGGC	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	5 cut(s)	38, 243, 561, 824, 1134
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	502
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	344, 353, 473
NaeI	GCCGGC	1 cut(s)	503
NdeII	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
NgoMIV	GCCGGC	1 cut(s)	501
NlaIII	CATG	3 cut(s)	197, 689, 926
NmeAIII	GCCGAG	1 cut(s)	373
NruI	TCGCGA	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	690
PctI	GAATGC	1 cut(s)	316
PdiI	GCCGGC	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	149, 1314
PflFI	GACNNNGTC	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	824
PspFI	CCCAGC	1 cut(s)	1011
PspPI	GGNCC	2 cut(s)	336, 372
PspXI	VCTCGAGB	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	856
PsuI	RGATCY	2 cut(s)	589, 944
PsyI	GACNNNGTC	1 cut(s)	370
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	1 cut(s)	1101
RsaNI	GTAC	1 cut(s)	1100
RseI	CAYNNNNRTG	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	5 cut(s)	38, 243, 561, 824, 1134
Sau3AI	GATC	6 cut(s)	73, 164, 259, 589, 846, 944
Sau96I	GGNCC	2 cut(s)	336, 372
SduI	GDGCHC	2 cut(s)	399, 702
SfaNI	GCATC	3 cut(s)	258, 516, 831
Sfr274I	CTCGAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	242, 296
SmoI	CTYRAG	2 cut(s)	242, 296
SsiI	CCGC	2 cut(s)	119, 904
SspMI	CTAG	2 cut(s)	647, 1387
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	391, 1132, 1182, 1357
TaiI	ACGT	3 cut(s)	440, 625, 1037
TaqI	TCGA	3 cut(s)	76, 297, 732
TaqII	GACCGA	1 cut(s)	1241
TfiI	GAWTC	2 cut(s)	149, 1314
Tru1I	TTAA	5 cut(s)	38, 243, 561, 824, 1134
Tru9I	TTAA	5 cut(s)	38, 243, 561, 824, 1134
TscAI	CASTG	1 cut(s)	857
TspDTI	ATGAA	8 cut(s)	80, 210, 323, 465, 558, 731, 830, 939
TspRI	CASTG	1 cut(s)	857
Tth111I	GACNNNGTC	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	372
VspI	ATTAAT	1 cut(s)	824
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	5 cut(s)	197, 410, 513, 763, 874
XhoI	CTCGAG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	1211
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	2 cut(s)	647, 1387
ZraI	GACGTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.