Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005274

Physical Location & Seq

Genomic Coordinates Forward (+)

131483 .. 134243

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAGGAAGAACTGTGTGCTGATCTTGAGCTGAACCAGGTTATAGAACGTAATGTAGGGGATTTATCAGGTGGGGAGCTTCAAAGATTTGCCATTGCCGTCGTCGCCATACAGAATGCAGAGATATATATGTTTGACGAACCTTCAAGTTATCTTGATGTGAAACAGAGGCTTAAAGCTGCCCAAGTTGTCCGATCTTTGCTTAGGGCTAATAGCTATGTAATTGTTGTGGAGCATGATCGATCCATTAGTGTCTTGGATTACTTATCAGACTTCATTTGCTGTTTATACGGGAAACCGGGTGCGTATGGAGTTGTGACACTTCCGTTCTCAGTTAGAGAAGGAATCAACATCTTCTTGGCCGGATTTGTCCCTACAGAAAATCTTAGGTTCCGGGATGAATCTTTGACATTCAAGGTTGCTGAGACACCACAGGAAAGTGCTGAGGAAATTGAGACATATGCACGATATAGATACCCATCAATGAGTAAAACTCAGGGAAACTTCAGGCTTCGTGTGGTTGAGGGTGAATTTACTGATTCTCAAATTATTGTGATGCTGGGTGAGAATGGAACGGGGAAGACAACATTTATTCGTATGCTGGCGGGTCTATTGAAACCTGATTCTGTAGAAAATTCAGATGTGGAGATACCTGAATTCAATGTTTCTTACAAGCCCCAGAAAATCAGTCCAAAGTTTCAGTCCACTGTCAGACACTTGTTACATTCAAGAATTCGTGATTCATATACTCATCCACTATTCATGTCAGATGTGATGAAGCCTCTTCTAATTGAACAATTGATCGATCAAGAAGTCGTGAATCTCTCTGGCGGAGAGTTGCAGAGGGTTGCATTATGCCTATGCCTTGGGAAGCCTGCAGATATTTATCTGATAGATGAACCAAGTGCTTATCTTGATTCTGAGCAGCGTATTGTTGCTTCCAAAGTCATAAAGAGGTTTATCCTTCATGCTAAGAAAACTGCTTTCGTGGTTGAACATGATTTTATTATGGCTACCTACTTGGCGGATAGAGTTATAGTCTATGAGGGGAGGCCGTCAATTGATTGTATTGCAAATTGTCCCCAGTCATTGTTGACTGGGATGAATCTATTCTTATCTCATCTTGATATCACATTTAGGCGTGACCCCACTAACTATCGCCCAAGAATCAACAAATTGGATTCAACGAAGGATAGGGAACAAAAAGCTGCTGGGTCTTACTATTACCTGGATGATATTGTTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0003674 GO:0005215 GO:0005488 GO:0005506 GO:0005524 GO:0006403 GO:0006405 GO:0006412 GO:0006413 GO:0006415 GO:0006518 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017076 GO:0019538 GO:0022411 GO:0022613 GO:0030554 GO:0031503 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0033036 GO:0033750 GO:0034613 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043024 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044877 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran Fer4 RLI

Protein Analysis

417

Amino Acids

47.29

Weight (kDa)

5.63

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19210
fragaria_vesca	FvH4_2g37360 FvH4_2g37360
malus_domestica	MD08G1001700.v1.1 MD09G1160100.v1.1 MD15G1001000.v1.1 MD17G1145900.v1.1
prunus_persica	Prupe.1G366500_v2.0.a1 Prupe.1G366500_v2.0.a1 Prupe.3G018600_v2.0.a1 Prupe.3G018600_v2.0.a1
pyrus_communis	pycom08g00110 pycom15g00040
rosa_chinensis	RchiOBHm_Chr5g0005021 RchiOBHm_Chr6g0304351 RchiOBHm_Chr6g0304361
rosa_laevigata	RLG00000010987
rosa_multiflora	Rmu_sc0010714.1_g000006 Rmu_sc0015928.1_g000008 Rmu_ssc0000218.1_g000041
rosa_roxburghii	Rroxscaffold_7G00163810
rosa_rugosa	Rorug06G0330700
rosa_samantha	Rh5AG042900 Rh5CG047400 Rh6AG443700 Rh6BG458700 Rh6CG456500 Rh6DG443200
rosa_wichuraiana	Rw6G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	605, 831, 1025
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	4 cut(s)	530, 634, 656, 732
AcuI	CTGAAG	1 cut(s)	490
AgsI	TTSAA	9 cut(s)	83, 147, 415, 616, 661, 729, 794, 995, 1185
AjnI	CCWGG	2 cut(s)	36, 1227
AluBI	AGCT	5 cut(s)	31, 79, 179, 216, 1208
AluI	AGCT	5 cut(s)	31, 79, 179, 216, 1208
Alw26I	GTCTC	2 cut(s)	419, 449
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	360, 1052
ApeKI	GCWGC	3 cut(s)	179, 925, 1208
ApoI	RAATTY	4 cut(s)	530, 634, 656, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
Asp700I	GAANNNNTTC	1 cut(s)	1109
AsuC2I	CCSGG	2 cut(s)	300, 395
AsuHPI	GGTGA	2 cut(s)	539, 575
BarI	GAAGNNNNNNTAC	2 cut(s)	922, 954
BbsI	GAAGAC	1 cut(s)	587
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	166, 937, 1195
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	2 cut(s)	83, 1039
BciT130I	CCWGG	2 cut(s)	38, 1229
BcnI	CCSGG	2 cut(s)	300, 395
BcoDI	GTCTC	2 cut(s)	419, 449
BfmI	CTRYAG	3 cut(s)	375, 627, 876
BisI	GCNGC	3 cut(s)	180, 926, 1209
BlsI	GCNGC	3 cut(s)	181, 927, 1210
Bme1390I	CCNGG	4 cut(s)	38, 300, 395, 1229
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	4 cut(s)	38, 300, 395, 1229
BmrI	ACTGGG	2 cut(s)	1078, 1107
BmsI	GCATC	1 cut(s)	546
BmuI	ACTGGG	2 cut(s)	1078, 1107
BpiI	GAAGAC	1 cut(s)	587
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
Bpu10I	CCTNAGC	2 cut(s)	203, 444
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	300, 395
Bsa29I	ATCGAT	2 cut(s)	241, 804
BsaBI	GATNNNNATC	2 cut(s)	478, 885
BsaJI	CCNNGG	1 cut(s)	865
Bse1I	ACTGG	2 cut(s)	1084, 1102
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	2 cut(s)	478, 885
BseBI	CCWGG	2 cut(s)	38, 1229
BseCI	ATCGAT	2 cut(s)	241, 804
BseDI	CCNNGG	1 cut(s)	865
BseGI	GGATG	4 cut(s)	403, 751, 1107, 1237
BseJI	GATNNNNATC	2 cut(s)	478, 885
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	5 cut(s)	345, 414, 435, 509, 912
BseNI	ACTGG	2 cut(s)	1084, 1102
BseXI	GCAGC	3 cut(s)	166, 937, 1195
BseYI	CCCAGC	2 cut(s)	559, 1211
BshFI	GGCC	2 cut(s)	362, 1054
BshVI	ATCGAT	2 cut(s)	241, 804
BsiSI	CCGG	3 cut(s)	299, 363, 394
BslFI	GGGAC	2 cut(s)	356, 1065
BsmAI	GTCTC	2 cut(s)	419, 449
BsmFI	GGGAC	2 cut(s)	356, 1065
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	362, 1054
Bsp143I	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
BspACI	CCGC	3 cut(s)	605, 831, 1025
BspANI	GGCC	2 cut(s)	362, 1054
BspCNI	CTCAG	5 cut(s)	344, 415, 436, 508, 913
BspDI	ATCGAT	2 cut(s)	241, 804
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	880
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	1084, 1102
BssECI	CCNNGG	1 cut(s)	865
BssMI	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
BssT1I	CCWWGG	1 cut(s)	865
Bst2UI	CCWGG	2 cut(s)	38, 1229
Bst4CI	ACNGT	2 cut(s)	15, 709
Bst6I	CTCTTC	1 cut(s)	789
BstC8I	GCNNGC	2 cut(s)	603, 876
BstDEI	CTNAG	8 cut(s)	203, 331, 386, 423, 444, 495, 921, 972
BstF5I	GGATG	4 cut(s)	403, 751, 1107, 1237
BstKTI	GATC	6 cut(s)	25, 197, 241, 245, 804, 808
BstMAI	GTCTC	2 cut(s)	419, 449
BstMBI	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	38, 1229
BstSCI	CCNGG	4 cut(s)	36, 298, 393, 1227
BstSFI	CTRYAG	3 cut(s)	375, 627, 876
BstV1I	GCAGC	3 cut(s)	166, 937, 1195
BstV2I	GAAGAC	1 cut(s)	587
Bsu15I	ATCGAT	2 cut(s)	241, 804
BsuRI	GGCC	2 cut(s)	362, 1054
BsuTUI	ATCGAT	2 cut(s)	241, 804
BtsCI	GGATG	4 cut(s)	403, 751, 1107, 1237
BtsIMutI	CAGTG	1 cut(s)	705
Cac8I	GCNNGC	2 cut(s)	603, 876
ClaI	ATCGAT	2 cut(s)	241, 804
CsiI	ACCWGGT	1 cut(s)	36
CviAII	CATG	4 cut(s)	236, 763, 968, 998
DdeI	CTNAG	8 cut(s)	203, 331, 386, 423, 444, 495, 921, 972
DpnI	GATC	6 cut(s)	24, 196, 240, 244, 803, 807
DpnII	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
EciI	GGCGGA	2 cut(s)	846, 1040
Eco130I	CCWWGG	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	1129
Eco57I	CTGAAG	1 cut(s)	490
EcoRI	GAATTC	2 cut(s)	656, 732
EcoRII	CCWGG	2 cut(s)	36, 1227
EcoRV	GATATC	1 cut(s)	1129
EcoT14I	CCWWGG	1 cut(s)	865
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	4 cut(s)	239, 766, 971, 1001
FaqI	GGGAC	2 cut(s)	356, 1065
FatI	CATG	4 cut(s)	235, 762, 967, 997
FauI	CCCGC	1 cut(s)	598
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	180, 926, 1209
FokI	GGATG	4 cut(s)	410, 738, 1114, 1244
Fsp4HI	GCNGC	3 cut(s)	180, 926, 1209
GluI	GCNGC	3 cut(s)	180, 926, 1209
GsaI	CCCAGC	2 cut(s)	563, 1215
HaeIII	GGCC	2 cut(s)	362, 1054
HapII	CCGG	3 cut(s)	299, 363, 394
Hin1II	CATG	4 cut(s)	239, 766, 971, 1001
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HpaII	CCGG	3 cut(s)	299, 363, 394
HphI	GGTGA	2 cut(s)	539, 575
Hpy166II	GTNNAC	2 cut(s)	705, 1095
Hpy188I	TCNGA	7 cut(s)	194, 271, 640, 713, 769, 891, 922
Hpy188III	TCNNGA	8 cut(s)	26, 155, 729, 737, 809, 817, 914, 1124
Hpy8I	GTNNAC	2 cut(s)	705, 1095
Hpy99I	CGWCG	2 cut(s)	104, 107
HpyAV	CCTTC	4 cut(s)	153, 335, 974, 1183
HpyCH4III	ACNGT	2 cut(s)	15, 709
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	119, 464, 841, 851, 878, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	8 cut(s)	203, 331, 386, 423, 444, 495, 921, 972
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	239, 766, 971, 1001
Kzo9I	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
LmnI	GCTCC	2 cut(s)	76, 232
Lsp1109I	GCAGC	3 cut(s)	166, 937, 1195
LweI	GCATC	1 cut(s)	546
MabI	ACCWGGT	1 cut(s)	36
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	3 cut(s)	316, 720, 1142
MalI	GATC	6 cut(s)	24, 196, 240, 244, 803, 807
MboI	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
MboII	GAAGA	4 cut(s)	20, 346, 592, 776
MfeI	CAATTG	2 cut(s)	797, 1059
MnlI	CCTC	8 cut(s)	162, 439, 517, 792, 837, 948, 1039, 1044
MroXI	GAANNNNTTC	1 cut(s)	1109
MseI	TTAA	1 cut(s)	174
MspI	CCGG	3 cut(s)	299, 363, 394
MspR9I	CCNGG	4 cut(s)	38, 300, 395, 1229
MunI	CAATTG	2 cut(s)	797, 1059
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	38, 1229
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	2 cut(s)	300, 395
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
NlaIII	CATG	4 cut(s)	239, 766, 971, 1001
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	316, 1142
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	1109
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	181, 927, 1210
Psp6I	CCWGG	2 cut(s)	36, 1227
PspFI	CCCAGC	2 cut(s)	559, 1211
PspGI	CCWGG	2 cut(s)	36, 1227
PspN4I	GGNNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	880
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	3 cut(s)	180, 926, 1209
Sau3AI	GATC	6 cut(s)	22, 194, 238, 242, 801, 805
ScrFI	CCNGG	4 cut(s)	38, 300, 395, 1229
SexAI	ACCWGGT	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	546
SfcI	CTRYAG	3 cut(s)	375, 627, 876
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	3 cut(s)	605, 831, 1025
StyD4I	CCNGG	4 cut(s)	36, 298, 393, 1227
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	2 cut(s)	15, 709
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	241, 804
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	2 cut(s)	316, 1142
TseI	GCWGC	3 cut(s)	179, 925, 1208
Tsp45I	GTSAC	2 cut(s)	316, 1142
TspDTI	ATGAA	9 cut(s)	17, 265, 414, 732, 751, 791, 912, 956, 1118
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	712
XapI	RAATTY	4 cut(s)	530, 634, 656, 732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.