Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005274

Physical Location & Seq

Genomic Coordinates Forward (+)

63669474 .. 63672727

Gene Structure 3254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCGGACCGGTTAACCCGTATAGCTATTGTGAGCTCTGATAGATGCAAGCCCAAGAAGTGTCGCCAGGAATGCAAGAAGAGCTGTCCTGTCGTCAAGACTGGGAAACTATGTATTGAGGTTACTACTGCATCCAAAATTGCTTTTATCTCAGAAGAGTTGTGCATTGGGTGTGGTATATGTGTTAAGAAATGCCCGTTTGAGGCAATTCAGATTATTAACTTGCCAAAGGATTTGGACAAAGATACCACCCATCGTTATGGGGCTAACACTTTCAAGTTACACAGGTTACCAGTCCCAAGGCCAGGTCAAGTCCTTGGTTTGGTTGGAACTAATGGAATTGGGAAGTCAACTGCCCTCAAAGTTTTGGCTGGAAAACTGAAGCCAAATTTAGGCCGTTTCAATAATCCTCCGGATTGGCAGGAAATCTTGACCTACTTTCGTGGATCTGAGTTGCAGAATTATTTTACCCGTATTTTGGAAGACAATTTGAAGGCCATTATAAAGCCCCAGTATGTAGATCACATTCCAAAAGCAGTTCATGGAAATGTAGGGGAGGTGCTCAACCAGAAAGATGAGAGGGGTGTCAAGGAAGAACTGTGTCATGACCTTGAGCTGAACCAGGTTATTGATCGTAATGTAGGGGATTTATCAGGTGGGGAACTTCAAAGATTTGCTATTGCTGTTGTTGCCATACAGAGTGCAGAGATATATATGTTTGATGAGCCTTCAAGTTATCTTGATGTCAAACAAAGGCTCAAAGCTGCCCAAGTTGTACGATCATTGCTCAGGCCTAATAGCTATGTAATTGTTGTGGAGCACGATTTGAGTGTCCTGGATTACTTATCGGACTTCATTTGCTGTTTATATGGAAAACCGGGTGCATATGGAGTTGTAACCCTTCCCTTCTCAGTTAGAGAAGGAATCAACATCTTCTTGGCTGGATTTGTTCCTACTGAAAATCTGAGGTTTCGAGATGAATCACTGACCTTTAAGGCAAGGCTACAATTTTTTTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0003674 GO:0005215 GO:0005488 GO:0005506 GO:0005524 GO:0006403 GO:0006405 GO:0006412 GO:0006413 GO:0006415 GO:0006518 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017076 GO:0019538 GO:0022411 GO:0022613 GO:0030554 GO:0031503 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0033036 GO:0033750 GO:0034613 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043024 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044877 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran Fer4 RLI

Protein Analysis

340

Amino Acids

38.13

Weight (kDa)

8.82

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_RLI	PF04068	6 - 36	1.6e-13	Possible Fer4-like domain in RNase L inhibitor, RLI
Fer4	PF00037	49 - 71	1.1e-08	4Fe-4S binding domain
Fer4_6	PF12837	49 - 70	3.6e-06	4Fe-4S binding domain
ABC_tran	PF00005	102 - 244	5.7e-18	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19210
fragaria_vesca	FvH4_2g37360 FvH4_2g37360
malus_domestica	MD08G1001700.v1.1 MD09G1160100.v1.1 MD15G1001000.v1.1 MD17G1145900.v1.1
prunus_persica	Prupe.1G366500_v2.0.a1 Prupe.1G366500_v2.0.a1 Prupe.3G018600_v2.0.a1 Prupe.3G018600_v2.0.a1
pyrus_communis	pycom08g00110 pycom15g00040
rosa_chinensis	RchiOBHm_Chr5g0005021 RchiOBHm_Chr6g0304351 RchiOBHm_Chr6g0304361
rosa_laevigata	RLG00000010987
rosa_multiflora	Rmu_sc0010714.1_g000006 Rmu_sc0015928.1_g000008 Rmu_ssc0000218.1_g000041
rosa_roxburghii	Rroxscaffold_7G00163810
rosa_rugosa	Rorug06G0330700
rosa_samantha	Rh5AG042900 Rh5CG047400 Rh6AG443700 Rh6BG458700 Rh6CG456500 Rh6DG443200
rosa_wichuraiana	Rw6G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AccIII	TCCGGA	1 cut(s)	412
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	5 cut(s)	202, 305, 322, 392, 478
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	5 cut(s)	277, 403, 493, 668, 732
AjnI	CCWGG	4 cut(s)	66, 304, 621, 834
AluBI	AGCT	6 cut(s)	26, 36, 84, 616, 764, 801
AluI	AGCT	6 cut(s)	26, 36, 84, 616, 764, 801
Alw21I	GWGCWC	3 cut(s)	38, 564, 822
AlwI	GGATC	1 cut(s)	454
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	4 cut(s)	302, 394, 495, 791
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	1 cut(s)	388
AsiGI	ACCGGT	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	879
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	3 cut(s)	38, 564, 822
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	4 cut(s)	68, 306, 623, 836
BcnI	CCSGG	1 cut(s)	879
BisI	GCNGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	766
Bme1390I	CCNGG	5 cut(s)	68, 306, 623, 836, 879
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	5 cut(s)	68, 306, 623, 836, 879
BmrI	ACTGGG	2 cut(s)	111, 505
BmsI	GCATC	2 cut(s)	35, 140
BmuI	ACTGGG	2 cut(s)	111, 505
BpiI	GAAGAC	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	299, 316
BsaWI	WCCGGW	2 cut(s)	9, 412
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 305, 322, 392, 478
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	3 cut(s)	106, 293, 511
Bse3DI	GCAATG	1 cut(s)	782
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	4 cut(s)	68, 306, 623, 836
BseDI	CCNNGG	2 cut(s)	299, 316
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	5 cut(s)	202, 305, 322, 392, 478
BseMI	GCAATG	1 cut(s)	782
BseMII	CTCAG	5 cut(s)	165, 441, 802, 924, 956
BseNI	ACTGG	3 cut(s)	106, 293, 511
BseXI	GCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	4 cut(s)	304, 396, 497, 793
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	3 cut(s)	38, 564, 822
BsiSI	CCGG	3 cut(s)	10, 413, 878
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	5 cut(s)	202, 305, 322, 392, 478
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	304, 396, 497, 793
Bsp1286I	GDGCHC	3 cut(s)	38, 564, 822
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	446, 520, 631, 779
BspANI	GGCC	4 cut(s)	304, 396, 497, 793
BspCNI	CTCAG	5 cut(s)	164, 442, 801, 923, 957
BspEI	TCCGGA	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	604
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	3 cut(s)	106, 293, 511
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	299, 316
BssMI	GATC	4 cut(s)	446, 520, 631, 779
BssT1I	CCWWGG	2 cut(s)	299, 316
Bst2UI	CCWGG	4 cut(s)	68, 306, 623, 836
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	2 cut(s)	74, 150
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	5 cut(s)	151, 450, 788, 910, 965
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	4 cut(s)	449, 523, 634, 782
BstMBI	GATC	4 cut(s)	446, 520, 631, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 81, 689
BstNI	CCWGG	4 cut(s)	68, 306, 623, 836
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	5 cut(s)	66, 304, 621, 834, 877
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	4 cut(s)	304, 396, 497, 793
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	983
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	7
CpoI	CGGWCCG	1 cut(s)	7
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	776
CspAI	ACCGGT	1 cut(s)	9
CspI	CGGWCCG	1 cut(s)	7
CviAII	CATG	3 cut(s)	542, 605, 1020
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	5 cut(s)	151, 450, 788, 910, 965
DpnI	GATC	4 cut(s)	448, 522, 633, 781
DpnII	GATC	4 cut(s)	446, 520, 631, 779
Eam1104I	CTCTTC	2 cut(s)	74, 150
EarI	CTCTTC	2 cut(s)	74, 150
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	299, 316
Eco147I	AGGCCT	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	4 cut(s)	66, 304, 621, 834
EcoT14I	CCWWGG	2 cut(s)	299, 316
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	2 cut(s)	299, 316
FaeI	CATG	3 cut(s)	545, 608, 1023
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	541, 604, 1019
FauNDI	CATATG	1 cut(s)	886
Fnu4HI	GCNGC	1 cut(s)	765
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	765
GluI	GCNGC	1 cut(s)	765
HaeIII	GGCC	4 cut(s)	304, 396, 497, 793
HapII	CCGG	3 cut(s)	10, 413, 878
Hin1II	CATG	3 cut(s)	545, 608, 1023
HincII	GTYRAC	2 cut(s)	15, 351
HindII	GTYRAC	2 cut(s)	15, 351
HinfI	GANTC	2 cut(s)	924, 980
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	3 cut(s)	10, 413, 878
Hpy166II	GTNNAC	2 cut(s)	15, 351
Hpy188I	TCNGA	7 cut(s)	7, 40, 154, 213, 451, 850, 966
Hpy188III	TCNNGA	6 cut(s)	97, 413, 430, 605, 740, 974
Hpy8I	GTNNAC	2 cut(s)	15, 351
HpyAV	CCTTC	5 cut(s)	487, 738, 911, 914, 916
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4V	TGCA	7 cut(s)	48, 75, 131, 165, 457, 704, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 81, 689
HpyF3I	CTNAG	5 cut(s)	151, 450, 788, 910, 965
Hsp92II	CATG	3 cut(s)	545, 608, 1023
Kpn2I	TCCGGA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	446, 520, 631, 779
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	2 cut(s)	35, 140
MabI	ACCWGGT	1 cut(s)	621
MaeIII	GTNAC	4 cut(s)	121, 279, 288, 895
MalI	GATC	4 cut(s)	448, 522, 633, 781
MboI	GATC	4 cut(s)	446, 520, 631, 779
MboII	GAAGA	5 cut(s)	91, 167, 494, 605, 925
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	3 cut(s)	38, 564, 822
MluCI	AATT	8 cut(s)	138, 207, 339, 388, 460, 487, 807, 1007
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	7 cut(s)	112, 196, 368, 420, 550, 573, 960
MroI	TCCGGA	1 cut(s)	412
MseI	TTAA	4 cut(s)	14, 186, 219, 993
MslI	CAYNNNNRTG	2 cut(s)	258, 546
MspI	CCGG	3 cut(s)	10, 413, 878
MspR9I	CCNGG	5 cut(s)	68, 306, 623, 836, 879
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	4 cut(s)	68, 306, 623, 836
MwoI	GCNNNNNNNGC	3 cut(s)	72, 81, 689
NciI	CCSGG	1 cut(s)	879
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	4 cut(s)	446, 520, 631, 779
NlaIII	CATG	3 cut(s)	545, 608, 1023
PagI	TCATGA	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	924, 980
PfoI	TCCNGGA	1 cut(s)	834
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	4 cut(s)	66, 304, 621, 834
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	4 cut(s)	66, 304, 621, 834
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	2 cut(s)	258, 546
Rsr2I	CGGWCCG	1 cut(s)	7
RsrII	CGGWCCG	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	4 cut(s)	14, 186, 219, 993
SatI	GCNGC	1 cut(s)	765
Sau3AI	GATC	4 cut(s)	446, 520, 631, 779
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	5 cut(s)	68, 306, 623, 836, 879
SduI	GDGCHC	3 cut(s)	38, 564, 822
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	35, 140
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	258, 546
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	8 cut(s)	138, 207, 339, 388, 460, 487, 807, 1007
SseBI	AGGCCT	1 cut(s)	793
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	5 cut(s)	66, 304, 621, 834, 877
StyI	CCWWGG	2 cut(s)	299, 316
TaaI	ACNGT	1 cut(s)	600
TaqI	TCGA	1 cut(s)	973
TasI	AATT	8 cut(s)	138, 207, 339, 388, 460, 487, 807, 1007
TfiI	GAWTC	2 cut(s)	924, 980
Tru1I	TTAA	4 cut(s)	14, 186, 219, 993
Tru9I	TTAA	4 cut(s)	14, 186, 219, 993
TscAI	CASTG	1 cut(s)	990
TseI	GCWGC	1 cut(s)	764
TspDTI	ATGAA	3 cut(s)	530, 844, 993
TspRI	CASTG	1 cut(s)	990
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.