Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010714.1

Orthogroup ID

OG0005274

Physical Location & Seq

Genomic Coordinates Forward (+)

12632 .. 13012

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010714.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgccccgatatagatacccaacattaatgactaaaacttatgagaagttcaggcttcatgtgatggagatggagatggagggtgagaatggaacagggaaatcgacttttatccgcttgctggctggtctattgaaacctgattctgagtcgaatgtggagatacctgagtttaatgtatcttacaagccccaaaaaattagtcccaagtttacgagaactgtcagggacttgcttcatatgaaaattcgtgactcgtatactcgtcctcagtttgtatcggatgtcatgaaattgagtgggtttgaagcgacgtcgtttttgaaacggatagggtttaaagcctcgtctctttctagaggcagcaaattcgatccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0003674 GO:0005215 GO:0005488 GO:0005506 GO:0005524 GO:0006403 GO:0006405 GO:0006412 GO:0006413 GO:0006415 GO:0006518 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017076 GO:0019538 GO:0022411 GO:0022613 GO:0030554 GO:0031503 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0033036 GO:0033750 GO:0034613 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043024 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044877 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran Fer4 RLI

Protein Analysis

126

Amino Acids

14.62

Weight (kDa)

9.84

Isoelectric Point (pI)

22.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19210
fragaria_vesca	FvH4_2g37360 FvH4_2g37360
malus_domestica	MD08G1001700.v1.1 MD09G1160100.v1.1 MD15G1001000.v1.1 MD17G1145900.v1.1
prunus_persica	Prupe.1G366500_v2.0.a1 Prupe.1G366500_v2.0.a1 Prupe.3G018600_v2.0.a1 Prupe.3G018600_v2.0.a1
pyrus_communis	pycom08g00110 pycom15g00040
rosa_chinensis	RchiOBHm_Chr5g0005021 RchiOBHm_Chr6g0304351 RchiOBHm_Chr6g0304361
rosa_laevigata	RLG00000010987
rosa_multiflora	Rmu_sc0010714.1_g000006 Rmu_sc0015928.1_g000008 Rmu_ssc0000218.1_g000041
rosa_roxburghii	Rroxscaffold_7G00163810
rosa_rugosa	Rorug06G0330700
rosa_samantha	Rh5AG042900 Rh5CG047400 Rh6AG443700 Rh6BG458700 Rh6CG456500 Rh6DG443200
rosa_wichuraiana	Rw6G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	246, 368
AcyI	GRCGYC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	136, 308, 325
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	2 cut(s)	246, 368
ArsI	GACNNNNNNTTYG	4 cut(s)	187, 219, 304, 336
AseI	ATTAAT	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	95
BaeI	ACNNNNGTAYC	2 cut(s)	155, 188
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	58, 64, 70
BcgI	CGANNNNNNTGC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	138, 159, 284
BseXI	GCAGC	1 cut(s)	375
BslFI	GGGAC	2 cut(s)	189, 242
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	2 cut(s)	189, 242
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	115
BspCNI	CTCAG	3 cut(s)	139, 160, 283
BspHI	TCATGA	1 cut(s)	288
BspPI	GGATC	1 cut(s)	368
BssMI	GATC	1 cut(s)	373
BssNAI	GTATAC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	119, 123
BstDEI	CTNAG	3 cut(s)	147, 168, 270
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	119, 123
CciI	TCATGA	1 cut(s)	288
CviAII	CATG	2 cut(s)	59, 289
CviJI	RGCY	4 cut(s)	55, 125, 190, 344
CviKI_1	RGCY	4 cut(s)	55, 125, 190, 344
DdeI	CTNAG	3 cut(s)	147, 168, 270
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DraI	TTTAAA	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	2 cut(s)	62, 292
FaiI	YATR	7 cut(s)	12, 42, 60, 240, 242, 261, 290
FaqI	GGGAC	2 cut(s)	189, 242
FatI	CATG	2 cut(s)	58, 288
FauNDI	CATATG	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	62, 292
HinfI	GANTC	3 cut(s)	143, 149, 254
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	213, 261
Hpy188I	TCNGA	2 cut(s)	148, 283
Hpy188III	TCNNGA	3 cut(s)	251, 289, 357
Hpy8I	GTNNAC	2 cut(s)	213, 261
Hpy99I	CGWCG	2 cut(s)	316, 319
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	147, 168, 270
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	62, 292
Kzo9I	GATC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	37, 81, 107, 111, 153, 180, 211
Lsp1109I	GCAGC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MluCI	AATT	4 cut(s)	198, 246, 293, 368
MlyI	GAGTC	2 cut(s)	158, 248
MnlI	CCTC	4 cut(s)	73, 279, 353, 355
MseI	TTAA	3 cut(s)	26, 174, 339
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	62, 292
NmuCI	GTSAC	1 cut(s)	251
PagI	TCATGA	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	2 cut(s)	157, 248
PpsI	GAGTC	2 cut(s)	157, 248
PshBI	ATTAAT	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	26, 174, 339
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	158, 248
SetI	ASST	3 cut(s)	142, 169, 317
Sse9I	AATT	4 cut(s)	198, 246, 293, 368
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	104, 152, 372
TasI	AATT	4 cut(s)	198, 246, 293, 368
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	3 cut(s)	26, 174, 339
Tru9I	TTAA	3 cut(s)	26, 174, 339
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	47, 227, 257, 305
TspGWI	ACGGA	2 cut(s)	343, 366
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	2 cut(s)	246, 368
XbaI	TCTAGA	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.