Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005274

Physical Location & Seq

Genomic Coordinates Forward (+)

63672731 .. 63674572

Gene Structure 1842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGTAAAACACAGGGAAACTTCAGGCTTCGTGTGATGGAGGGTGAATTTACTGATTCGCAGATTATTGTGATGCTCGGTGAGAATGGAACAGGGAAAACAACATTTATCCGTATGCTGGCTGGTTTATTGAAACCTGATAATGTAGAAAATTCAGATGTGGAAATACCTGAATTTAATGTCTCTTACAAGCCGCAGAAGATCAGTCCAAAGTTTCAGAACACTGTCAGACACTTGTTGCATTCAAAAATACGTGATTCGTATACTCATCCCCAGTTCATGTCAGATGTGATGAAGCCTCTTCTTATTGAGCAACTAATGGATCAAGAAGTTGTAAATCTCTCTGGTGGAGAGTTGCAAAGGGTTGCATTATGTTTGTGCCTTGGAAAGCCAGCAGACATTTATCTGATCGATGAACCAAGTGCATATCTGGATTCTGAGCAGCGTATTGTTGCTTCAAAAGTCATAAAGAGGTTTATCCTGCATGCCAAGAAAACTGCATTTGTGGTTGAACACGACTTTATCATGGCTACGTACTTGGCAGATAGAGTTATTGTCTATGAAGGGAAGCCATCGATTGATTGTACTGCAAATTGTCCGCAGTCATTGTTGACTGGGATGAACCTCTTTTTATCTCATCTGGATATCACATTTAGACGTGACCCAACAAACTTTCGTCCAAGGATCAACAAAATGAACTCAACAAAGGACAGAGAACAAAAGAATGCTGGTTCCTACTATTACCTGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0003674 GO:0005215 GO:0005488 GO:0005506 GO:0005524 GO:0006403 GO:0006405 GO:0006412 GO:0006413 GO:0006415 GO:0006518 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017076 GO:0019538 GO:0022411 GO:0022613 GO:0030554 GO:0031503 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0033036 GO:0033750 GO:0034613 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043024 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044877 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran Fer4 RLI

Protein Analysis

251

Amino Acids

28.69

Weight (kDa)

7.01

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	13 - 141	8.4e-18	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19210
fragaria_vesca	FvH4_2g37360 FvH4_2g37360
malus_domestica	MD08G1001700.v1.1 MD09G1160100.v1.1 MD15G1001000.v1.1 MD17G1145900.v1.1
prunus_persica	Prupe.1G366500_v2.0.a1 Prupe.1G366500_v2.0.a1 Prupe.3G018600_v2.0.a1 Prupe.3G018600_v2.0.a1
pyrus_communis	pycom08g00110 pycom15g00040
rosa_chinensis	RchiOBHm_Chr5g0005021 RchiOBHm_Chr6g0304351 RchiOBHm_Chr6g0304361
rosa_laevigata	RLG00000010987
rosa_multiflora	Rmu_sc0010714.1_g000006 Rmu_sc0015928.1_g000008 Rmu_ssc0000218.1_g000041
rosa_roxburghii	Rroxscaffold_7G00163810
rosa_rugosa	Rorug06G0330700
rosa_samantha	Rh5AG042900 Rh5CG047400 Rh6AG443700 Rh6BG458700 Rh6CG456500 Rh6DG443200
rosa_wichuraiana	Rw6G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	263
AciI	CCGC	2 cut(s)	194, 599
AclWI	GGATC	2 cut(s)	330, 692
AcsI	RAATTY	3 cut(s)	47, 151, 173
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	536, 586
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	133, 246, 459, 512
AjiI	CACGTC	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	330, 692
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	3 cut(s)	47, 151, 173
AsuHPI	GGTGA	2 cut(s)	56, 92
BarI	GAAGNNNNNNTAC	2 cut(s)	439, 471
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	2 cut(s)	31, 580
BciT130I	CCWGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	194, 443
BlsI	GCNGC	2 cut(s)	195, 444
Bme1390I	CCNGG	1 cut(s)	746
BmgBI	CACGTC	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	746
BmrI	ACTGGG	2 cut(s)	268, 624
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	2 cut(s)	268, 624
Bsa29I	ATCGAT	2 cut(s)	411, 575
BsaAI	YACGTR	2 cut(s)	254, 534
BsaJI	CCNNGG	2 cut(s)	382, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	274, 619
BseBI	CCWGG	1 cut(s)	746
BseCI	ATCGAT	2 cut(s)	411, 575
BseDI	CCNNGG	2 cut(s)	382, 680
BseGI	GGATG	3 cut(s)	268, 624, 754
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	274, 619
BseXI	GCAGC	1 cut(s)	454
BshVI	ATCGAT	2 cut(s)	411, 575
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	2 cut(s)	241, 730
Bsp143I	GATC	4 cut(s)	201, 322, 408, 684
BspACI	CCGC	2 cut(s)	194, 599
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	2 cut(s)	411, 575
BspLI	GGNNCC	1 cut(s)	733
BspPI	GGATC	2 cut(s)	330, 692
BsrI	ACTGG	2 cut(s)	274, 619
BssECI	CCNNGG	2 cut(s)	382, 680
BssMI	GATC	4 cut(s)	201, 322, 408, 684
BssNAI	GTATAC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	382, 680
Bst1107I	GTATAC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	2 cut(s)	254, 534
BstC8I	GCNNGC	3 cut(s)	120, 393, 486
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	268, 624, 754
BstKTI	GATC	4 cut(s)	204, 325, 411, 687
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	4 cut(s)	201, 322, 408, 684
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	744
BstSNI	TACGTA	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	264
Bsu15I	ATCGAT	2 cut(s)	411, 575
BsuTUI	ATCGAT	2 cut(s)	411, 575
BtrI	CACGTC	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	268, 624, 754
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	120, 393, 486
ClaI	ATCGAT	2 cut(s)	411, 575
Csp6I	GTAC	2 cut(s)	535, 585
CviAII	CATG	3 cut(s)	280, 485, 526
CviJI	RGCY	7 cut(s)	28, 122, 193, 298, 391, 530, 571
CviKI_1	RGCY	7 cut(s)	28, 122, 193, 298, 391, 530, 571
CviQI	GTAC	2 cut(s)	535, 585
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	203, 324, 410, 686
DpnII	GATC	4 cut(s)	201, 322, 408, 684
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco105I	TACGTA	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	382, 680
Eco32I	GATATC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	744
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	382, 680
ErhI	CCWWGG	2 cut(s)	382, 680
FaeI	CATG	3 cut(s)	283, 488, 529
FaiI	YATR	9 cut(s)	116, 264, 281, 373, 427, 467, 486, 527, 561
FatI	CATG	3 cut(s)	279, 484, 525
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	194, 443
FokI	GGATG	2 cut(s)	255, 631
Fsp4HI	GCNGC	2 cut(s)	194, 443
GluI	GCNGC	2 cut(s)	194, 443
Hin1II	CATG	3 cut(s)	283, 488, 529
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	3 cut(s)	56, 257, 434
HphI	GGTGA	2 cut(s)	56, 92
Hpy166II	GTNNAC	2 cut(s)	264, 612
Hpy188I	TCNGA	6 cut(s)	157, 219, 230, 286, 408, 439
Hpy188III	TCNNGA	3 cut(s)	326, 431, 641
Hpy8I	GTNNAC	2 cut(s)	264, 612
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	3 cut(s)	253, 533, 658
HpyCH4V	TGCA	7 cut(s)	241, 358, 368, 425, 484, 500, 590
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	3 cut(s)	253, 533, 658
Hsp92II	CATG	3 cut(s)	283, 488, 529
Kzo9I	GATC	4 cut(s)	201, 322, 408, 684
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	3 cut(s)	253, 533, 658
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	4 cut(s)	203, 324, 410, 686
MboI	GATC	4 cut(s)	201, 322, 408, 684
MboII	GAAGA	2 cut(s)	211, 293
MluCI	AATT	4 cut(s)	47, 151, 173, 592
MnlI	CCTC	4 cut(s)	34, 309, 465, 635
MseI	TTAA	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	746
Mva1269I	GAATGC	2 cut(s)	241, 730
MvaI	CCWGG	1 cut(s)	746
NdeII	GATC	4 cut(s)	201, 322, 408, 684
NlaIII	CATG	3 cut(s)	283, 488, 529
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	659
NspI	RCATGY	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	488
PctI	GAATGC	2 cut(s)	241, 730
PfeI	GAWTC	3 cut(s)	56, 257, 434
PkrI	GCNGC	2 cut(s)	195, 444
Ppu21I	YACGTR	2 cut(s)	254, 534
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	1 cut(s)	733
RsaI	GTAC	2 cut(s)	536, 586
RsaNI	GTAC	2 cut(s)	535, 585
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	194, 443
Sau3AI	GATC	4 cut(s)	201, 322, 408, 684
ScrFI	CCNGG	1 cut(s)	746
SetI	ASST	8 cut(s)	139, 172, 256, 476, 536, 627, 661, 747
SfaNI	GCATC	1 cut(s)	63
SnaBI	TACGTA	1 cut(s)	534
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	4 cut(s)	47, 151, 173, 592
SsiI	CCGC	2 cut(s)	194, 599
StyD4I	CCNGG	1 cut(s)	744
StyI	CCWWGG	2 cut(s)	382, 680
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	3 cut(s)	256, 536, 661
TaqI	TCGA	2 cut(s)	411, 575
TasI	AATT	4 cut(s)	47, 151, 173, 592
TatI	WGTACW	1 cut(s)	584
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	56, 257, 434
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	6 cut(s)	268, 308, 429, 576, 635, 710
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	3 cut(s)	47, 151, 173
XceI	RCATGY	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.