Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015928.1

Orthogroup ID

OG0005274

Physical Location & Seq

Genomic Coordinates Reverse (-)

55922 .. 56503

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015928.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgtctcttacaagccgcgcgcagaagatcagtccaaagtttcagaacactgtcagacacttgttgcattcaaaaatacgtgattcgtatactcatccccagttcatgtcggatgtgatgaagcctcttcttattgagcaactaatggatcaagaagttgtaaatctctctggtggagagttgcaaagggttgcattatgtttgtgccttggaaagccagcagacatttatctgatcgatgaaccaagtgcatatctggattctgagcatcgtattgttgcttcaaaagtcataaagaggtttatcctgcatgccaagaaaactgcatttgtggttgaacacgactttatcatggctacgtacttggcagatagagttattgtctatgaagggaagccatcgattgattgtactgcaaattgtccgcagtcattgttgactgggatgaacctctttttatctcatctggatatcacatttagacgtgacccaacaaactttcgtccaagaatcaacaaaatgaactcaacaaaggacagagaacaaaagaatgctggttcctactattacctggatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0003674 GO:0005215 GO:0005488 GO:0005506 GO:0005524 GO:0006403 GO:0006405 GO:0006412 GO:0006413 GO:0006415 GO:0006518 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017076 GO:0019538 GO:0022411 GO:0022613 GO:0030554 GO:0031503 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0033036 GO:0033750 GO:0034613 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043024 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044877 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran Fer4 RLI

Protein Analysis

193

Amino Acids

22.17

Weight (kDa)

8.62

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19210
fragaria_vesca	FvH4_2g37360 FvH4_2g37360
malus_domestica	MD08G1001700.v1.1 MD09G1160100.v1.1 MD15G1001000.v1.1 MD17G1145900.v1.1
prunus_persica	Prupe.1G366500_v2.0.a1 Prupe.1G366500_v2.0.a1 Prupe.3G018600_v2.0.a1 Prupe.3G018600_v2.0.a1
pyrus_communis	pycom08g00110 pycom15g00040
rosa_chinensis	RchiOBHm_Chr5g0005021 RchiOBHm_Chr6g0304351 RchiOBHm_Chr6g0304361
rosa_laevigata	RLG00000010987
rosa_multiflora	Rmu_sc0010714.1_g000006 Rmu_sc0015928.1_g000008 Rmu_ssc0000218.1_g000041
rosa_roxburghii	Rroxscaffold_7G00163810
rosa_rugosa	Rorug06G0330700
rosa_samantha	Rh5AG042900 Rh5CG047400 Rh6AG443700 Rh6BG458700 Rh6CG456500 Rh6DG443200
rosa_wichuraiana	Rw6G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	2 cut(s)	18, 20
AciI	CCGC	2 cut(s)	16, 425
AclWI	GGATC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	362, 412
AgsI	TTSAA	3 cut(s)	72, 285, 338
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	20, 22
BarI	GAAGNNNNNNTAC	2 cut(s)	265, 297
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	9
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	2 cut(s)	94, 450
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	2 cut(s)	94, 450
Bsa29I	ATCGAT	2 cut(s)	237, 401
BsaAI	YACGTR	2 cut(s)	80, 360
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	100, 445
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	2 cut(s)	237, 401
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	4 cut(s)	94, 118, 450, 580
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	100, 445
BsePI	GCGCGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	18, 20
BshVI	ATCGAT	2 cut(s)	237, 401
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	2 cut(s)	67, 556
Bsp143I	GATC	3 cut(s)	27, 148, 234
BspACI	CCGC	2 cut(s)	16, 425
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	2 cut(s)	237, 401
BspFNI	CGCG	2 cut(s)	18, 20
BspLI	GGNNCC	1 cut(s)	559
BspPI	GGATC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	100, 445
BssECI	CCNNGG	1 cut(s)	208
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	3 cut(s)	27, 148, 234
BssNAI	GTATAC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	132
BstBAI	YACGTR	2 cut(s)	80, 360
BstC8I	GCNNGC	3 cut(s)	20, 219, 312
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	4 cut(s)	94, 118, 450, 580
BstFNI	CGCG	2 cut(s)	18, 20
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	3 cut(s)	30, 151, 237
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	27, 148, 234
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	570
BstSNI	TACGTA	1 cut(s)	360
BstUI	CGCG	2 cut(s)	18, 20
BstZ17I	GTATAC	1 cut(s)	90
Bsu15I	ATCGAT	2 cut(s)	237, 401
BsuTUI	ATCGAT	2 cut(s)	237, 401
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	4 cut(s)	94, 118, 450, 580
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	20, 219, 312
CfoI	GCGC	2 cut(s)	20, 22
ClaI	ATCGAT	2 cut(s)	237, 401
Csp6I	GTAC	2 cut(s)	361, 411
CviAII	CATG	3 cut(s)	106, 311, 352
CviJI	RGCY	5 cut(s)	15, 124, 217, 356, 397
CviKI_1	RGCY	5 cut(s)	15, 124, 217, 356, 397
CviQI	GTAC	2 cut(s)	361, 411
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	29, 150, 236
DpnII	GATC	3 cut(s)	27, 148, 234
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	109, 314, 355
FaiI	YATR	8 cut(s)	90, 107, 199, 253, 293, 312, 353, 387
FatI	CATG	3 cut(s)	105, 310, 351
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	3 cut(s)	81, 125, 457
Fsp4HI	GCNGC	1 cut(s)	16
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	20, 22
Hin1II	CATG	3 cut(s)	109, 314, 355
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	3 cut(s)	83, 260, 510
Hpy166II	GTNNAC	2 cut(s)	90, 438
Hpy188I	TCNGA	5 cut(s)	45, 56, 112, 234, 265
Hpy188III	TCNNGA	3 cut(s)	152, 257, 467
Hpy8I	GTNNAC	2 cut(s)	90, 438
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	79, 359, 484
HpyCH4V	TGCA	7 cut(s)	67, 184, 194, 251, 310, 326, 416
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	3 cut(s)	79, 359, 484
Hsp92II	CATG	3 cut(s)	109, 314, 355
HspAI	GCGC	2 cut(s)	18, 20
Kzo9I	GATC	3 cut(s)	27, 148, 234
LpnPI	CCDG	9 cut(s)	113, 156, 231, 242, 320, 426, 452, 540, 557
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	3 cut(s)	79, 359, 484
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	29, 150, 236
MboI	GATC	3 cut(s)	27, 148, 234
MboII	GAAGA	2 cut(s)	37, 119
MluCI	AATT	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	135, 291, 461
MspR9I	CCNGG	1 cut(s)	572
Mva1269I	GAATGC	2 cut(s)	67, 556
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	2 cut(s)	18, 20
NdeII	GATC	3 cut(s)	27, 148, 234
NlaIII	CATG	3 cut(s)	109, 314, 355
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	314
PauI	GCGCGC	1 cut(s)	18
PctI	GAATGC	2 cut(s)	67, 556
PfeI	GAWTC	3 cut(s)	83, 260, 510
PkrI	GCNGC	1 cut(s)	17
Ppu21I	YACGTR	2 cut(s)	80, 360
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	559
PteI	GCGCGC	1 cut(s)	18
RsaI	GTAC	2 cut(s)	362, 412
RsaNI	GTAC	2 cut(s)	361, 411
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	3 cut(s)	27, 148, 234
ScrFI	CCNGG	1 cut(s)	572
SetI	ASST	6 cut(s)	82, 302, 362, 453, 487, 573
SfaNI	GCATC	1 cut(s)	277
SnaBI	TACGTA	1 cut(s)	360
SphI	GCATGC	1 cut(s)	314
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	16, 425
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	3 cut(s)	82, 362, 487
TaqI	TCGA	2 cut(s)	237, 401
TasI	AATT	1 cut(s)	418
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	83, 260, 510
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	6 cut(s)	94, 134, 255, 402, 461, 536
TspRI	CASTG	1 cut(s)	55
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.