Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

2302261 .. 2303906

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGACGGCCGGCAGAGGCGATAAAAACCGGTACAAAATTATGGTAAAAAAACCCAAAACCATTGACGAATTAGCCCAAGCCCAAAATATCATGGGCCTAGTTAGGCCCAAACACCTCTCAAGATTATTCATTTTTGACACAGTTGACTTAAAATCGGAAATCCATAATCTAATCCAACGGCTAGAATTCGAGGAGGCACAATCTGCTATCCAGAAGCCGCCAGGTTGGCATGAAAAACGATCTCCCGTCCGGAGATCTCAAGCCGCGTCAAAATTGCACCTCCCACCAAACAACAAATTCTCTGCACTCTTCCTCCTTCCCGTCAACGGAGATCTCTCGCCGGTGCTCGGATTGACTGGCCTTCGATCCGCCTCACTTCTTATATGTGAAGGGATGGTAAGTGGGTTCGGGGAATCAATGGGCAGGTCGTCCCAAGGGCCTTCATTCTCCGGCAGCAACAATAACGGTGACGCTGGTGATTTCGAATGCAATATTTGCTTTGAATTGGCCCAAGACCCAATTGTGACCCTATGCGGCCATCTCTTCTGCTGGCCTTGCCTTTACAAGTGGCTCCACATTCACTCCCACTCTCAGGAATGCCCTGTTTGCAAAGCCCTTGTAAAGGAGGAGAATTTGGTTCCTTTATACGGTAGGGGAAAGACGTCAACTGACCCAAGATCAAAGTCCATTCCTGGCATTAGTATCCCAAACCGTCCAGCAGGACAAAGACCCGAAACAGCTCCTCCACCAGAACAGAACCATTTTCCTCTCCGTGGATTTGGGTTCATGGGAGGGATGGGAGGTTTGGGCGGGTTTGCACCAGTTGCAACCACAAGGTTTGGGAATTTCACATTTTCTGCGGCTATTGGTGGCTTTATCCCTTCTATGTTCAATTTTCCGCTGAATGGGTTTCCTGATCCCGCCATTTACGGTGAAAGTGCTGGATTTCCTCATGGGTTCTCAAATGCATTTCATGGCGGCCATATACATAGACATCACCTCCGCAGGGGAACAGGTCAGGGACAGCAAGATTATAGATTGAAGATGTTGTGTATGATTGTTATAGTTTCAGTAATTCTTGCTCTCGCTTGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

366

Amino Acids

40.0

Weight (kDa)

9.24

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	161 - 208	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	162 - 204	4.4e-08	Ring finger domain
zf-C3HC4_2	PF13923	162 - 203	6.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	162 - 204	2.2e-07	zinc-RING finger domain
zf-C3HC4	PF00097	163 - 203	1.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	163 - 201	2.8e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	414
AccII	CGCG	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	249
AclWI	GGATC	2 cut(s)	360, 911
AcoI	YGGCCR	3 cut(s)	6, 535, 979
AcsI	RAATTY	4 cut(s)	185, 296, 631, 844
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	8 cut(s)	326, 347, 592, 622, 647, 773, 905, 1006
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	503, 892, 1042
AjnI	CCWGG	2 cut(s)	220, 691
AluBI	AGCT	1 cut(s)	740
AluI	AGCT	1 cut(s)	740
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	360, 911
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	9 cut(s)	6, 94, 104, 358, 437, 507, 535, 551, 979
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	4 cut(s)	185, 296, 631, 844
AsiGI	ACCGGT	1 cut(s)	27
AspS9I	GGNCC	4 cut(s)	94, 105, 437, 508
AsuHPI	GGTGA	4 cut(s)	479, 488, 944, 989
AsuII	TTCGAA	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	3 cut(s)	388, 546, 790
BceAI	ACGGC	2 cut(s)	21, 194
BciT130I	CCWGG	2 cut(s)	222, 693
BciVI	GTATCC	1 cut(s)	713
BfaI	CTAG	2 cut(s)	98, 182
BfuAI	ACCTGC	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	713
BglI	GCCNNNNNGGC	1 cut(s)	226
BglII	AGATCT	2 cut(s)	254, 331
BisI	GCNGC	6 cut(s)	218, 264, 454, 535, 861, 979
BlsI	GCNGC	6 cut(s)	219, 265, 455, 536, 862, 980
Bme1390I	CCNGG	2 cut(s)	222, 693
BmgT120I	GGNCC	4 cut(s)	94, 105, 437, 508
BmiI	GGNNCC	2 cut(s)	572, 639
BmrFI	CCNGG	2 cut(s)	222, 693
Bpu14I	TTCGAA	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	103, 243
BsaHI	GRCGYC	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	433, 772
BsaWI	WCCGGW	2 cut(s)	27, 249
BsaXI	ACNNNNNCTCC	8 cut(s)	297, 327, 566, 596, 727, 757, 984, 1014
Bsc4I	CCNNNNNNNGG	8 cut(s)	326, 347, 592, 622, 647, 773, 905, 1006
Bse118I	RCCGGY	3 cut(s)	8, 27, 340
Bse1I	ACTGG	2 cut(s)	361, 821
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	222, 693
BseDI	CCNNGG	2 cut(s)	433, 772
BseGI	GGATG	2 cut(s)	399, 801
BseLI	CCNNNNNNNGG	8 cut(s)	326, 347, 592, 622, 647, 773, 905, 1006
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	2 cut(s)	361, 821
BseRI	GAGGAG	3 cut(s)	206, 641, 732
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	9 cut(s)	8, 96, 106, 360, 439, 509, 537, 553, 981
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	5 cut(s)	9, 28, 250, 341, 450
BslFI	GGGAC	2 cut(s)	415, 1035
BslI	CCNNNNNNNGG	8 cut(s)	326, 347, 592, 622, 647, 773, 905, 1006
BsmFI	GGGAC	2 cut(s)	415, 1035
BsmI	GAATGC	2 cut(s)	491, 602
BsnI	GGCC	9 cut(s)	8, 96, 106, 360, 439, 509, 537, 553, 981
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
BspANI	GGCC	9 cut(s)	8, 96, 106, 360, 439, 509, 537, 553, 981
BspCNI	CTCAG	1 cut(s)	604
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	572, 639
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	360, 911
BspT104I	TTCGAA	1 cut(s)	483
BsrFI	RCCGGY	3 cut(s)	8, 27, 340
BsrI	ACTGG	2 cut(s)	361, 821
BssAI	RCCGGY	3 cut(s)	8, 27, 340
BssECI	CCNNGG	2 cut(s)	433, 772
BssMI	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
BssNI	GRCGYC	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	222, 693
Bst4CI	ACNGT	5 cut(s)	142, 467, 650, 713, 932
Bst6I	CTCTTC	2 cut(s)	314, 548
BstACI	GRCGYC	1 cut(s)	662
BstAPI	GCANNNNNTGC	3 cut(s)	203, 495, 824
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	10, 551
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	772
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	2 cut(s)	399, 801
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	6 cut(s)	242, 257, 334, 368, 680, 919
BstMBI	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 226, 495, 555, 606, 824
BstNI	CCWGG	2 cut(s)	222, 693
BstSCI	CCNGG	2 cut(s)	220, 691
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	254, 331
BstYI	RGATCY	2 cut(s)	254, 331
BstZI	CGGCCG	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	9 cut(s)	8, 96, 106, 360, 439, 509, 537, 553, 981
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	399, 801
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	10, 551
Cfr10I	RCCGGY	3 cut(s)	8, 27, 340
Cfr13I	GGNCC	4 cut(s)	94, 105, 437, 508
CseI	GACGC	2 cut(s)	255, 479
Csp6I	GTAC	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	5 cut(s)	91, 230, 787, 953, 974
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	6 cut(s)	241, 256, 333, 367, 679, 918
DpnII	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
EaeI	YGGCCR	3 cut(s)	6, 535, 979
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	314, 548
EarI	CTCTTC	2 cut(s)	314, 548
EciI	GGCGGA	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	433
Eco52I	CGGCCG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	220, 691
EcoT14I	CCWWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	5 cut(s)	94, 233, 790, 956, 977
FaqI	GGGAC	2 cut(s)	415, 1035
FatI	CATG	5 cut(s)	90, 229, 786, 952, 973
FauI	CCCGC	2 cut(s)	803, 928
Fnu4HI	GCNGC	6 cut(s)	218, 264, 454, 535, 861, 979
FokI	GGATG	2 cut(s)	406, 808
Fsp4HI	GCNGC	6 cut(s)	218, 264, 454, 535, 861, 979
FspBI	CTAG	2 cut(s)	98, 182
GluI	GCNGC	6 cut(s)	218, 264, 454, 535, 861, 979
HaeIII	GGCC	9 cut(s)	8, 96, 106, 360, 439, 509, 537, 553, 981
HapII	CCGG	5 cut(s)	9, 28, 250, 341, 450
HgaI	GACGC	2 cut(s)	255, 479
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	5 cut(s)	94, 233, 790, 956, 977
HincII	GTYRAC	3 cut(s)	145, 325, 666
HindII	GTYRAC	3 cut(s)	145, 325, 666
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	5 cut(s)	9, 28, 250, 341, 450
HphI	GGTGA	4 cut(s)	479, 488, 944, 989
Hpy166II	GTNNAC	3 cut(s)	145, 325, 666
Hpy188I	TCNGA	2 cut(s)	157, 350
Hpy188III	TCNNGA	5 cut(s)	120, 211, 250, 593, 914
Hpy8I	GTNNAC	3 cut(s)	145, 325, 666
HpyAV	CCTTC	5 cut(s)	326, 371, 383, 450, 891
HpyCH4III	ACNGT	5 cut(s)	142, 467, 650, 713, 932
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	7 cut(s)	277, 305, 489, 609, 818, 827, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 226, 495, 555, 606, 824
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	1 cut(s)	662
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	5 cut(s)	94, 233, 790, 956, 977
Kpn2I	TCCGGA	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
LmnI	GCTCC	2 cut(s)	576, 745
Lsp1109I	GCAGC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	98, 182
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	467, 523
MalI	GATC	6 cut(s)	241, 256, 333, 367, 679, 918
MboI	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
MboII	GAAGA	3 cut(s)	301, 535, 1054
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	2 cut(s)	254, 331
MhlI	GDGCHC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	970
MroI	TCCGGA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	8
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	5 cut(s)	9, 28, 250, 341, 450
MspR9I	CCNGG	2 cut(s)	222, 693
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	2 cut(s)	491, 602
MvaI	CCWGG	2 cut(s)	222, 693
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	6 cut(s)	203, 226, 495, 555, 606, 824
NaeI	GCCGGC	1 cut(s)	10
NdeII	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	5 cut(s)	94, 233, 790, 956, 977
NlaIV	GGNNCC	2 cut(s)	572, 639
NmuCI	GTSAC	2 cut(s)	467, 523
NsiI	ATGCAT	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	483
PctI	GAATGC	2 cut(s)	491, 602
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	413
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	6 cut(s)	219, 265, 455, 536, 862, 980
Psp6I	CCWGG	2 cut(s)	220, 691
PspGI	CCWGG	2 cut(s)	220, 691
PspN4I	GGNNCC	2 cut(s)	572, 639
PspPI	GGNCC	4 cut(s)	94, 105, 437, 508
PsuI	RGATCY	2 cut(s)	254, 331
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	6 cut(s)	218, 264, 454, 535, 861, 979
Sau3AI	GATC	6 cut(s)	239, 254, 331, 365, 677, 916
Sau96I	GGNCC	4 cut(s)	94, 105, 437, 508
ScrFI	CCNGG	2 cut(s)	222, 693
SduI	GDGCHC	1 cut(s)	348
SfuI	TTCGAA	1 cut(s)	483
SgrAI	CRCCGGYG	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	118, 258
SmoI	CTYRAG	2 cut(s)	118, 258
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	2 cut(s)	98, 182
StyD4I	CCNGG	2 cut(s)	220, 691
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	5 cut(s)	142, 467, 650, 713, 932
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	3 cut(s)	189, 364, 483
TauI	GCSGC	5 cut(s)	220, 266, 537, 863, 981
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	467, 523
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	2 cut(s)	467, 523
TspDTI	ATGAA	5 cut(s)	118, 246, 432, 775, 962
TspGWI	ACGGA	2 cut(s)	342, 761
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	4 cut(s)	185, 296, 631, 844
XspI	CTAG	2 cut(s)	98, 182
ZraI	GACGTC	1 cut(s)	663
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.