Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Reverse (-)

2333645 .. 2335669

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCGTTTGTTAAGGCGGAAAACAATGGACAGCCAGGGTGCAACGACATCGCATGAAGGAATCAAGACTGTGAGAGCAGATAATCGTTGTGATTTCTCGAGCTACTCAGATCTTTGTGTTTCCGTTGTCACCTGGAACATGAATGGTCAGGTCTGTTACGAAGATTTGGCGGAGCTGGTTGGAAACAGCCGGAAGTCTGATCTTCTGGTGGTAGGTCTTCAGGAGGTGCCCCGTAAAAATATTTCACGACTTTTAAAGGCAGCGCTGCTTGACTCCCACATCTTGTTAGGAAAAGCCATCATGCAATCTATACACCTCTACGTGTTTGGGCCAAAGGACTCTGATTTGTTCATCAGAGAATTGAAGATGGATAAGCTATCGGTAGGATGTTTTGGAGGATTACTTAGGAGAAAAAAAGGCGCTGTGGCAATCCACCTTTACTACAAAGGCATTCCTATGGTGTTCATCTCTTGCCATCTCTCTGCTCATGCTCACAACGTGGAGAAAAGGAACTCGGAATTTAGAGACGTATCAGAATCTCTTTTCTCTGGGAAGCTGAACCCTTATGCTAAACCTCCCCAAATCACTGTTTGGTTGGGAGATCTCAACTACAGATTACAAGGAATTGACAACTACCCAGCAAGAAACCTAATCAACAATGATCTCCAGAGACTACTCACTTGCAACGACCAACTGTTACAAGAGGCTGGGAGAGGACAGATCTTCGAAGGTTATAGCGAGGGCACGTTAACGTTCAAGCCCACATATAAATATGACATTGGAAGTAGCAACTATGATACAAGTTACAAGGTATGTATAGTCAATATTTCATCTCTAATCACATGCACATTTTTACCATTCGTAATTGTAAGTATAATTACATTTGGTTCTTCAATCCTCACCAACGGACGTTTTCAGGTGAGAGTGCCATCGTGGACCGACCGGATTTTGTTCAAGACGAAAGACTCCGACGAAATCAAGGCAACTTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

332

Amino Acids

37.36

Weight (kDa)

9.08

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	43 - 326	7.4e-52	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	2 cut(s)	16, 170
AclI	AACGTT	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	499
AfeI	AGCGCT	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	364, 757, 894, 955
AjnI	CCWGG	2 cut(s)	33, 131
AluBI	AGCT	4 cut(s)	102, 175, 376, 556
AluI	AGCT	4 cut(s)	102, 175, 376, 556
Alw26I	GTCTC	2 cut(s)	519, 664
Ama87I	CYCGRG	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	260, 265
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	265, 422
AspS9I	GGNCC	2 cut(s)	329, 936
AsuHPI	GGTGA	3 cut(s)	121, 892, 931
AsuII	TTCGAA	1 cut(s)	726
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	936
BaeGI	GKGCMC	2 cut(s)	231, 746
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	252, 272
BccI	CCATC	4 cut(s)	305, 361, 483, 937
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	2 cut(s)	35, 133
BcoDI	GTCTC	2 cut(s)	519, 664
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	2 cut(s)	266, 423
BglII	AGATCT	3 cut(s)	109, 601, 720
BisI	GCNGC	2 cut(s)	261, 266
BlsI	GCNGC	2 cut(s)	262, 267
Bme1390I	CCNGG	2 cut(s)	35, 133
Bme18I	GGWCC	1 cut(s)	936
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	329, 936
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	35, 133
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	726
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	942
Bse1I	ACTGG	1 cut(s)	991
BseBI	CCWGG	2 cut(s)	35, 133
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	991
BseSI	GKGCMC	2 cut(s)	231, 746
BseXI	GCAGC	2 cut(s)	252, 272
BseYI	CCCAGC	2 cut(s)	637, 707
Bsh1285I	CGRYCG	1 cut(s)	943
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	943
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	190, 943
BsmAI	GTCTC	2 cut(s)	519, 664
BsmBI	CGTCTC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	2 cut(s)	231, 746
Bsp143I	GATC	5 cut(s)	109, 199, 601, 661, 720
BspACI	CCGC	2 cut(s)	16, 170
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	991
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	5 cut(s)	109, 199, 601, 661, 720
Bst2UI	CCWGG	2 cut(s)	35, 133
Bst4CI	ACNGT	3 cut(s)	70, 589, 696
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	726
BstDEI	CTNAG	2 cut(s)	106, 404
BstF5I	GGATG	1 cut(s)	392
BstH2I	RGCGCY	2 cut(s)	266, 423
BstHHI	GCGC	2 cut(s)	265, 422
BstKTI	GATC	5 cut(s)	112, 202, 604, 664, 723
BstMAI	GTCTC	2 cut(s)	519, 664
BstMBI	GATC	5 cut(s)	109, 199, 601, 661, 720
BstMCI	CGRYCG	1 cut(s)	943
BstNI	CCWGG	2 cut(s)	35, 133
BstNSI	RCATGY	1 cut(s)	846
BstSCI	CCNGG	2 cut(s)	33, 131
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	2 cut(s)	231, 746
BstV1I	GCAGC	2 cut(s)	252, 272
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	3 cut(s)	109, 601, 720
BstYI	RGATCY	3 cut(s)	109, 601, 720
BsuRI	GGCC	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	585
CfoI	GCGC	2 cut(s)	265, 422
Cfr13I	GGNCC	2 cut(s)	329, 936
CviAII	CATG	5 cut(s)	53, 139, 301, 488, 843
DdeI	CTNAG	2 cut(s)	106, 404
DpnI	GATC	5 cut(s)	111, 201, 603, 663, 722
DpnII	GATC	5 cut(s)	109, 199, 601, 661, 720
DraI	TTTAAA	1 cut(s)	255
DraIII	CACNNNGTG	1 cut(s)	499
EciI	GGCGGA	2 cut(s)	31, 185
Eco47I	GGWCC	1 cut(s)	936
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	33, 131
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	5 cut(s)	56, 142, 304, 491, 846
FatI	CATG	5 cut(s)	52, 138, 300, 487, 842
Fnu4HI	GCNGC	2 cut(s)	261, 266
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	261, 266
GlaI	GCGC	2 cut(s)	264, 421
GluI	GCNGC	2 cut(s)	261, 266
GsaI	CCCAGC	2 cut(s)	641, 711
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	2 cut(s)	266, 423
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	190, 943
HhaI	GCGC	2 cut(s)	265, 422
Hin1II	CATG	5 cut(s)	56, 142, 304, 491, 846
Hin6I	GCGC	2 cut(s)	263, 420
HinP1I	GCGC	2 cut(s)	263, 420
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	5 cut(s)	60, 272, 338, 536, 965
HpaI	GTTAAC	1 cut(s)	750
HpaII	CCGG	2 cut(s)	190, 943
HphI	GGTGA	3 cut(s)	121, 892, 931
Hpy166II	GTNNAC	2 cut(s)	750, 936
Hpy188I	TCNGA	7 cut(s)	109, 199, 343, 356, 517, 535, 970
Hpy188III	TCNNGA	6 cut(s)	64, 97, 221, 246, 667, 955
Hpy8I	GTNNAC	2 cut(s)	750, 936
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	2 cut(s)	50, 722
HpyCH4III	ACNGT	3 cut(s)	70, 589, 696
HpyCH4IV	ACGT	6 cut(s)	321, 498, 528, 746, 752, 910
HpyCH4V	TGCA	4 cut(s)	41, 304, 684, 846
HpyF3I	CTNAG	2 cut(s)	106, 404
HpySE526I	ACGT	6 cut(s)	321, 498, 528, 746, 752, 910
Hsp92II	CATG	5 cut(s)	56, 142, 304, 491, 846
HspAI	GCGC	2 cut(s)	263, 420
KspAI	GTTAAC	1 cut(s)	750
Kzo9I	GATC	5 cut(s)	109, 199, 601, 661, 720
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	252, 272
MaeII	ACGT	6 cut(s)	321, 498, 528, 746, 752, 910
MaeIII	GTNAC	4 cut(s)	127, 155, 696, 803
MalI	GATC	5 cut(s)	111, 201, 603, 663, 722
MboI	GATC	5 cut(s)	109, 199, 601, 661, 720
MboII	GAAGA	6 cut(s)	173, 194, 209, 376, 715, 882
MflI	RGATCY	3 cut(s)	109, 601, 720
MhlI	GDGCHC	2 cut(s)	231, 746
MluCI	AATT	5 cut(s)	359, 518, 624, 864, 876
MlyI	GAGTC	3 cut(s)	266, 332, 959
MmeI	TCCRAC	2 cut(s)	160, 993
MnlI	CCTC	8 cut(s)	217, 326, 389, 585, 697, 707, 733, 908
MseI	TTAA	3 cut(s)	11, 254, 749
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	2 cut(s)	190, 943
MspR9I	CCNGG	2 cut(s)	35, 133
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	35, 133
NdeII	GATC	5 cut(s)	109, 199, 601, 661, 720
NlaIII	CATG	5 cut(s)	56, 142, 304, 491, 846
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	846
NspV	TTCGAA	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	97
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	60, 536
PkrI	GCNGC	2 cut(s)	262, 267
PleI	GAGTC	3 cut(s)	266, 332, 959
PpsI	GAGTC	3 cut(s)	266, 332, 959
Ppu21I	YACGTR	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	33, 131
PspFI	CCCAGC	2 cut(s)	637, 707
PspGI	CCWGG	2 cut(s)	33, 131
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	329, 936
PsuI	RGATCY	3 cut(s)	109, 601, 720
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	11, 254, 749
SatI	GCNGC	2 cut(s)	261, 266
Sau3AI	GATC	5 cut(s)	109, 199, 601, 661, 720
Sau96I	GGNCC	2 cut(s)	329, 936
SchI	GAGTC	3 cut(s)	266, 332, 959
ScrFI	CCNGG	2 cut(s)	35, 133
SduI	GDGCHC	2 cut(s)	231, 746
SfcI	CTRYAG	1 cut(s)	610
Sfr274I	CTCGAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	726
SinI	GGWCC	1 cut(s)	936
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	5 cut(s)	359, 518, 624, 864, 876
SsiI	CCGC	2 cut(s)	16, 170
SspI	AATATT	2 cut(s)	241, 826
StyD4I	CCNGG	2 cut(s)	33, 131
TaaI	ACNGT	3 cut(s)	70, 589, 696
TaiI	ACGT	6 cut(s)	324, 501, 531, 749, 755, 913
TaqI	TCGA	2 cut(s)	98, 726
TaqII	GACCGA	1 cut(s)	953
TasI	AATT	5 cut(s)	359, 518, 624, 864, 876
TfiI	GAWTC	2 cut(s)	60, 536
Tru1I	TTAA	3 cut(s)	11, 254, 749
Tru9I	TTAA	3 cut(s)	11, 254, 749
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	260, 265
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	5 cut(s)	69, 155, 340, 454, 819
TspGWI	ACGGA	2 cut(s)	112, 921
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	936
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	846
XhoI	CTCGAG	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.