pycom08g03880

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015128
Physical Location & Seq
Forward (+)
2945239 .. 2946829
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03880.2

Sequence Viewer

Length: 1008 bp
ATGTTTGGGGCACTTGACGAGCTCTTTGAAAAGACTAGGGTCCGTCCGAAGGACGTAGGAGTCCTAGTAGTAAATTGTAGCATCTTCAACCCCACACCCTCTTTGTCTGCAATGATCATAAATCACTACAAATTGAGAGGCAACATTTTGAGCTACAATTTGGGTGGAATGGGGTGCAGTGCAGGGATCATAGCCGTTGATCTGGCTAGAGACATACTTCAAGCCAACCCTAATAACTATGCTGTTGTGGTGAGTACCGAGTGTGTGGGGTATAATTGGTACCCTGGTAGTGACAGGTCCATGCTCGTTGCGAATTGCTTTTTCCGCATGGGATGCTCCGCTGTGTTGCTCTCCAATCGCCGCCGCGATTATCACAGTGCTAAGTACCGGCTTGAACACGTTGTCCGGACACATAAAGGCGCTGATGATCGGAGTTTCAGGTGTGTGTACCAAGAGGAAGACGAAAAAAGATTGAAGGGGCTGAAGATCAGCAAAGACCTAATTGAAATTGGTGGTGAAGCCTTGAAAACCAACATCACGACATTGGGACCTTTAGTGCTGCCGTTCTCAGAGCAGCTTCTCTTCTTTGCCACATTGGTTTCGAGGTACTTGTTTTCCGGCGAAGGCAGTTCAATGTTATCTTTAGAGTCAAGCAAGAGACCCTACATTCCGGACTTCAAGCTGGCTTTCGAGTGCTTTTGCGTACATGCAGCGAGCAAGACTGTGCTCGATGAGCTGCAGAGGAACCTCGAGTTGAATGAGGAAAACATGGAGGCTTCTAGGATGACGCTTCACCGCTTTGGAAACACATCGAGCAGCAGCATATGGTATGAGTTGGCTTATTTGGAAGCGAAAGAGAAGGTGAAGAGAGGAGATAAGGTTTGGCAGTTGTCATTTGGTTCGGGATTCAAATGCAACAGCATTGTTTGGAGGTCGATGCGCCGCGTTAGGAAGCCCTCGAGGAACCCATGGCTTGACTGCATTGAACGATACCCAGTGAATCTCTAA

Protein Analysis

336

Amino Acids

38.09

Weight (kDa)

9.01

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26250
fragaria_vesca FvH4_2g36990
malus_domestica MD08G1046600.v1.1
prunus_persica Prupe.1G401500_v2.0.a1
pyrus_communis pycom08g03880 pycom15g04560
rosa_chinensis RchiOBHm_Chr6g0304771
rosa_laevigata RLG00000010951
rosa_multiflora Rmu_sc0003120.1_g000005
rosa_roxburghii Rroxscaffold_7G00163510
rosa_rugosa Rorug06G0334400
rosa_samantha Rh6AG446300 Rh6BG455300 Rh6CG459800 Rh6DG446600
rosa_wichuraiana Rw6G038830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AbsI CCTCGAGG 1 cut(s) 958
Acc65I GGTACC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 279
AccII CGCG 2 cut(s) 366, 945
AccIII TCCGGA 2 cut(s) 405, 670
AciI CCGC 6 cut(s) 325, 339, 361, 364, 796, 943
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 6 cut(s) 256, 281, 386, 449, 608, 705
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 397
AjnI CCWGG 1 cut(s) 283
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 5 cut(s) 22, 153, 577, 682, 736
AluI AGCT 5 cut(s) 22, 153, 577, 682, 736
Alw21I GWGCWC 2 cut(s) 24, 729
Alw26I GTCTC 2 cut(s) 204, 652
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 2 cut(s) 749, 958
Aor13HI TCCGGA 2 cut(s) 405, 670
ApeKI GCWGC 6 cut(s) 559, 574, 710, 736, 816, 819
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
Asp718I GGTACC 1 cut(s) 279
AspLEI GCGC 2 cut(s) 422, 942
AspS9I GGNCC 3 cut(s) 40, 297, 548
AsuHPI GGTGA 4 cut(s) 262, 527, 785, 874
AvaI CYCGRG 2 cut(s) 749, 958
AvaII GGWCC 3 cut(s) 40, 297, 548
BaeGI GKGCMC 1 cut(s) 13
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BanI GGYRCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 24, 729
BbvI GCAGC 6 cut(s) 546, 586, 722, 723, 828, 831
BceAI ACGGC 2 cut(s) 179, 547
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 204, 652
BfaI CTAG 4 cut(s) 36, 65, 207, 780
BfmI CTRYAG 1 cut(s) 737
BfoI RGCGCY 1 cut(s) 423
BisI GCNGC 9 cut(s) 361, 364, 560, 575, 711, 737, 817, 820, 943
BlsI GCNGC 9 cut(s) 362, 365, 561, 576, 712, 738, 818, 821, 944
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 3 cut(s) 40, 297, 548
BmeT110I CYCGRG 2 cut(s) 749, 958
BmgT120I GGNCC 3 cut(s) 40, 297, 548
BmiI GGNNCC 5 cut(s) 41, 281, 549, 746, 965
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 989
BmsI GCATC 3 cut(s) 90, 323, 927
BmuI ACTGGG 1 cut(s) 989
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 2 cut(s) 283, 968
BsaWI WCCGGW 2 cut(s) 405, 670
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 864, 894
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 995
Bse3DI GCAATG 1 cut(s) 117
BseAI TCCGGA 2 cut(s) 405, 670
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 283, 968
BseGI GGATG 2 cut(s) 338, 789
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 995
BseRI GAGGAG 1 cut(s) 885
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 6 cut(s) 546, 586, 722, 723, 828, 831
BsgI GTGCAG 2 cut(s) 196, 201
Bsh1236I CGCG 2 cut(s) 366, 945
BshNI GGYRCC 1 cut(s) 279
BsiHKAI GWGCWC 2 cut(s) 24, 729
BsiHKCI CYCGRG 2 cut(s) 749, 958
BsiSI CCGG 4 cut(s) 388, 406, 618, 671
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 204, 652
BsmFI GGGAC 1 cut(s) 561
Bso31I GGTCTC 1 cut(s) 652
BsoBI CYCGRG 2 cut(s) 749, 958
Bsp1286I GDGCHC 3 cut(s) 13, 24, 729
Bsp13I TCCGGA 2 cut(s) 405, 670
Bsp143I GATC 5 cut(s) 114, 186, 199, 427, 486
Bsp19I CCATGG 1 cut(s) 968
BspACI CCGC 6 cut(s) 325, 339, 361, 364, 796, 943
BspCNI CTCAG 1 cut(s) 581
BspEI TCCGGA 2 cut(s) 405, 670
BspFNI CGCG 2 cut(s) 366, 945
BspLI GGNNCC 5 cut(s) 41, 281, 549, 746, 965
BspMAI CTGCAG 1 cut(s) 741
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 387
BsrI ACTGG 1 cut(s) 995
BssAI RCCGGY 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 283, 968
BssMI GATC 5 cut(s) 114, 186, 199, 427, 486
BssT1I CCWWGG 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 377, 724
Bst6I CTCTTC 2 cut(s) 587, 860
BstAPI GCANNNNNTGC 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 684, 715
BstDEI CTNAG 2 cut(s) 381, 568
BstDSI CCRYGG 1 cut(s) 968
BstF5I GGATG 2 cut(s) 338, 789
BstFNI CGCG 2 cut(s) 366, 945
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 422, 942
BstKTI GATC 5 cut(s) 117, 189, 202, 430, 489
BstMAI GTCTC 2 cut(s) 204, 652
BstMBI GATC 5 cut(s) 114, 186, 199, 427, 486
BstMWI GCNNNNNNNGC 3 cut(s) 324, 333, 733
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 710
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 2 cut(s) 366, 945
BstV1I GCAGC 6 cut(s) 546, 586, 722, 723, 828, 831
BstV2I GAAGAC 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 968
BtsCI GGATG 2 cut(s) 338, 789
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 3 cut(s) 184, 382, 1002
Cac8I GCNNGC 2 cut(s) 684, 715
CfoI GCGC 2 cut(s) 422, 942
Cfr10I RCCGGY 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 40, 297, 548
CseI GACGC 1 cut(s) 796
Csp6I GTAC 6 cut(s) 255, 280, 385, 448, 607, 704
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 5 cut(s) 301, 328, 707, 769, 969
CviQI GTAC 6 cut(s) 255, 280, 385, 448, 607, 704
DdeI CTNAG 2 cut(s) 381, 568
DpnI GATC 5 cut(s) 116, 188, 201, 429, 488
DpnII GATC 5 cut(s) 114, 186, 199, 427, 486
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 587, 860
EarI CTCTTC 2 cut(s) 587, 860
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 968
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 652
Eco47I GGWCC 3 cut(s) 40, 297, 548
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 503
Eco88I CYCGRG 2 cut(s) 749, 958
EcoICRI GAGCTC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 968
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 968
FaeI CATG 5 cut(s) 304, 331, 710, 772, 972
FaqI GGGAC 1 cut(s) 561
FatI CATG 5 cut(s) 300, 327, 706, 768, 968
FauNDI CATATG 1 cut(s) 824
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 9 cut(s) 361, 364, 560, 575, 711, 737, 817, 820, 943
FokI GGATG 2 cut(s) 345, 796
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 9 cut(s) 361, 364, 560, 575, 711, 737, 817, 820, 943
FspBI CTAG 4 cut(s) 36, 65, 207, 780
GlaI GCGC 2 cut(s) 421, 941
GluI GCNGC 9 cut(s) 361, 364, 560, 575, 711, 737, 817, 820, 943
HaeII RGCGCY 1 cut(s) 423
HapII CCGG 4 cut(s) 388, 406, 618, 671
HgaI GACGC 1 cut(s) 796
HhaI GCGC 2 cut(s) 422, 942
Hin1II CATG 5 cut(s) 304, 331, 710, 772, 972
Hin6I GCGC 2 cut(s) 420, 940
HinP1I GCGC 2 cut(s) 420, 940
HinfI GANTC 4 cut(s) 60, 647, 906, 1000
HpaII CCGG 4 cut(s) 388, 406, 618, 671
HphI GGTGA 4 cut(s) 262, 527, 785, 874
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 48, 432, 571
Hpy188III TCNNGA 4 cut(s) 406, 538, 671, 903
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 4 cut(s) 43, 469, 617, 853
HpyCH4III ACNGT 2 cut(s) 377, 724
HpyCH4IV ACGT 2 cut(s) 54, 399
HpyCH4V TGCA 7 cut(s) 110, 177, 182, 710, 739, 915, 981
HpyF10VI GCNNNNNNNGC 3 cut(s) 324, 333, 733
HpyF3I CTNAG 2 cut(s) 381, 568
HpySE526I ACGT 2 cut(s) 54, 399
Hsp92II CATG 5 cut(s) 304, 331, 710, 772, 972
HspAI GCGC 2 cut(s) 420, 940
Kpn2I TCCGGA 2 cut(s) 405, 670
KpnI GGTACC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 5 cut(s) 114, 186, 199, 427, 486
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 6 cut(s) 546, 586, 722, 723, 828, 831
LweI GCATC 3 cut(s) 90, 323, 927
MaeI CTAG 4 cut(s) 36, 65, 207, 780
MaeII ACGT 2 cut(s) 54, 399
MaeIII GTNAC 1 cut(s) 290
MalI GATC 5 cut(s) 116, 188, 201, 429, 488
MboI GATC 5 cut(s) 114, 186, 199, 427, 486
MboII GAAGA 5 cut(s) 76, 470, 496, 574, 877
MhlI GDGCHC 3 cut(s) 13, 24, 729
MluCI AATT 7 cut(s) 73, 131, 157, 274, 313, 501, 507
MlyI GAGTC 2 cut(s) 69, 656
MroI TCCGGA 2 cut(s) 405, 670
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 4 cut(s) 388, 406, 618, 671
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 366, 945
MwoI GCNNNNNNNGC 3 cut(s) 324, 333, 733
NcoI CCATGG 1 cut(s) 968
NdeI CATATG 1 cut(s) 824
NdeII GATC 5 cut(s) 114, 186, 199, 427, 486
NlaIII CATG 5 cut(s) 304, 331, 710, 772, 972
NlaIV GGNNCC 5 cut(s) 41, 281, 549, 746, 965
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 710
PaeR7I CTCGAG 2 cut(s) 749, 958
PfeI GAWTC 2 cut(s) 906, 1000
PkrI GCNGC 9 cut(s) 362, 365, 561, 576, 712, 738, 818, 821, 944
PleI GAGTC 2 cut(s) 68, 655
PpsI GAGTC 2 cut(s) 68, 655
PpuMI RGGWCCY 1 cut(s) 548
PshAI GACNNNNGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 5 cut(s) 41, 281, 549, 746, 965
PspPI GGNCC 3 cut(s) 40, 297, 548
PspPPI RGGWCCY 1 cut(s) 548
PspXI VCTCGAGB 2 cut(s) 749, 958
PstI CTGCAG 1 cut(s) 741
RsaI GTAC 6 cut(s) 256, 281, 386, 449, 608, 705
RsaNI GTAC 6 cut(s) 255, 280, 385, 448, 607, 704
SacI GAGCTC 1 cut(s) 24
SatI GCNGC 9 cut(s) 361, 364, 560, 575, 711, 737, 817, 820, 943
Sau3AI GATC 5 cut(s) 114, 186, 199, 427, 486
Sau96I GGNCC 3 cut(s) 40, 297, 548
SchI GAGTC 2 cut(s) 69, 656
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 3 cut(s) 13, 24, 729
SfaNI GCATC 3 cut(s) 90, 323, 927
SfcI CTRYAG 1 cut(s) 737
Sfr274I CTCGAG 2 cut(s) 749, 958
SinI GGWCC 3 cut(s) 40, 297, 548
SlaI CTCGAG 2 cut(s) 749, 958
SmlI CTYRAG 2 cut(s) 749, 958
SmoI CTYRAG 2 cut(s) 749, 958
Sse9I AATT 7 cut(s) 73, 131, 157, 274, 313, 501, 507
SsiI CCGC 6 cut(s) 325, 339, 361, 364, 796, 943
SspMI CTAG 4 cut(s) 36, 65, 207, 780
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 968
TaaI ACNGT 2 cut(s) 377, 724
TaiI ACGT 2 cut(s) 57, 402
TaqI TCGA 7 cut(s) 602, 690, 729, 750, 812, 935, 959
TasI AATT 7 cut(s) 73, 131, 157, 274, 313, 501, 507
TauI GCSGC 3 cut(s) 363, 366, 945
TfiI GAWTC 2 cut(s) 906, 1000
TscAI CASTG 3 cut(s) 184, 382, 1002
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 6 cut(s) 559, 574, 710, 736, 816, 819
Tsp45I GTSAC 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 3 cut(s) 184, 382, 1002
VpaK11BI GGWCC 3 cut(s) 40, 297, 548
XceI RCATGY 1 cut(s) 710
XhoI CTCGAG 2 cut(s) 749, 958
XspI CTAG 4 cut(s) 36, 65, 207, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.