Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015128

Physical Location & Seq

Genomic Coordinates Forward (+)

5740084 .. 5743092

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGTCAGTTATCCCATCAGATATGGCCAGTGAGAGTGATCTCTTATCCACTGAGATCGTCAACCGTGGGATCGAGTCCTCCGGCCCCAATGCCGGCTCGCTGACGTTCTCCGTCAGGGTCCGGAGGCGACTGCCGGACTTTCTCCAATCGGTGAACCTTAAGTACGTCAAGTTGGGCTACCACCACCTCATCAACAATGCTATATACCTGGCCACCATACCCTTTCTGGTCGTGGTTTTCAGTGCTGAGGTTGGGAGTCTCAGTAGGGAGGAGCTGTGGAAGAAGCTCTGGTTTGATGCGCGTTATGATCTTGCAACCGTGCTTGGTTTCTTTGGGGTCTTTGTGTTCACCTTGTCTGTATACTTCATGTCACGCCCTCGCTCCATCTACCTCATTGATTTTGCTTGCTTTCACCCTAGCGACGATCTAAAGGTGTCAAAGGAGCAATTCATAGAGCTAGCAAGAAAATCAGGCAAGTTTGATGAACCGAGCCTCGAATTCCAGACTCGAATTCTCAACTCATCAGGTTTAGGAGACGAAACCTACATCCCAAAGTCAGTGATCACCTCCACCGAGAACACTGCAACCATGAAAGAAGGTCGAGCCGAGGCCTCAATGGTGATGTTCGGAGCACTGGACGAGCTCTTCGAAAAGACCAAGGTCCGTCCTAAGGACGTAGGTGTTCTTGTGGTGAATTGCAGCGTATTCAATCCCACACCCTCCTTGTCCGCCATGATCATAAACCACTACAAGATGAGGGGCAACATTTTGAGCTACAATCTGGGAGGCATGGGGTGCAGCGCTGGGATCATAGCCGTTGATTTGGCTAGGGATATGCTTCAGGCAAACCCCAACAACTATGCTGTGGTGGTGAGCACTGAGATGGTGGGATATAATTGGTACCCGGGCAGTGACAGGTCTATGCTCATTCCCAACTGTTTCTTCCGCATGGGTTGCTCCGCCGTGCTTCTCTCCAATCGCCGCCGTGACTACCACCGTGCCAAGTATCGCCTCGAACACATCGTTCGAACACATAAAGGCGCTGACGACCGTAGTTTCAGGTGTGTGTACCAAGAAGAAGATGAGCAAAGACTCAAGGGGCTAAAGATCAGCAAAGAGCTAGTGGAAATTGGTGGTGACGCACTGAAAACCAACATCACCACTCTCGGACCACTAGTCCTGCCCTTCTCGGAGCAGCTGCTCTTTTTCGCTACATTGGTCTCGAGGCACTTGTTCAACAAAGGAGCTTCACAGCCCTCTTTATCATCAGGCAAGAGACCCTACATTCCCGATTTCAAGCTGGCATTTGAGTGCTTCTGCGTGCACTCCGCGAGCAAGACTGTGCTGGATGAGCTGCAGAGAAACCTCGAGCTCAGCGACGAGAACATGGAGGCATCGAGGATGACACTGCACCGATTTGGTAACACTTCGAGCAGTAGCATATGGTATGAGCTGGCTTACATGGAAGCAAAAGAGAAAGTGAAGAGAGGGGACCGAGTTTGGCAGTTGGCGTTCGGGTCTGGATTCAAGTGCAACAGCATTGTTTGGCGGTCCATGCGCCGGGTTAGGAAGCCTTCAAGGAATCCATGGCTTGACTGCATTGAAAGATACCCAGTCATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

541

Amino Acids

61.35

Weight (kDa)

8.97

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	121 - 410	5.1e-132	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	437 - 517	2.5e-13	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	439 - 519	1.1e-09	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26250
fragaria_vesca	FvH4_2g36990
malus_domestica	MD08G1046600.v1.1
prunus_persica	Prupe.1G401500_v2.0.a1
pyrus_communis	pycom08g03880 pycom15g04560
rosa_chinensis	RchiOBHm_Chr6g0304771
rosa_laevigata	RLG00000010951
rosa_multiflora	Rmu_sc0003120.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163510
rosa_rugosa	Rorug06G0334400
rosa_samantha	Rh6AG446300 Rh6BG455300 Rh6CG459800 Rh6DG446600
rosa_wichuraiana	Rw6G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	900
AccB1I	GGYRCC	1 cut(s)	900
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	2 cut(s)	301, 1331
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	6 cut(s)	729, 946, 960, 982, 1329, 1549
AclWI	GGATC	2 cut(s)	77, 815
AcoI	YGGCCR	2 cut(s)	24, 210
AcsI	RAATTY	2 cut(s)	497, 510
AcuI	CTGAAG	1 cut(s)	824
AfaI	GTAC	3 cut(s)	164, 902, 1070
AfeI	AGCGCT	1 cut(s)	802
AfiI	CCNNNNNNNGG	3 cut(s)	92, 670, 1560
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	6 cut(s)	709, 1237, 1297, 1528, 1578, 1604
AhdI	GACNNNNNGTC	1 cut(s)	1175
AhlI	ACTAGT	1 cut(s)	1174
AjnI	CCWGG	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
Alw21I	GWGCWC	5 cut(s)	634, 645, 878, 1326, 1374
Alw26I	GTCTC	4 cut(s)	263, 528, 1225, 1270
Alw44I	GTGCAC	1 cut(s)	1322
AlwI	GGATC	2 cut(s)	77, 815
Ama87I	CYCGRG	3 cut(s)	904, 1222, 1367
Aor13HI	TCCGGA	1 cut(s)	120
Aor51HI	AGCGCT	1 cut(s)	802
AoxI	GGCC	4 cut(s)	24, 82, 210, 609
ApaLI	GTGCAC	1 cut(s)	1322
ApeKI	GCWGC	5 cut(s)	699, 798, 1195, 1198, 1354
ApoI	RAATTY	2 cut(s)	497, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
Asp718I	GGTACC	1 cut(s)	900
AspLEI	GCGC	4 cut(s)	301, 803, 1043, 1560
AspS9I	GGNCC	6 cut(s)	83, 118, 661, 1169, 1492, 1551
AsuC2I	CCSGG	3 cut(s)	905, 906, 1562
AsuHPI	GGTGA	9 cut(s)	163, 340, 404, 556, 631, 703, 883, 1148, 1150
AsuII	TTCGAA	2 cut(s)	648, 1027
AsuNHI	GCTAGC	1 cut(s)	457
AvaI	CYCGRG	3 cut(s)	904, 1222, 1367
AvaII	GGWCC	5 cut(s)	118, 661, 1169, 1492, 1551
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	1326
BalI	TGGCCA	2 cut(s)	26, 212
BanI	GGYRCC	1 cut(s)	900
BanII	GRGCYC	2 cut(s)	645, 1374
Bbv12I	GWGCWC	5 cut(s)	634, 645, 878, 1326, 1374
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	5 cut(s)	711, 810, 1185, 1207, 1341
BccI	CCATC	3 cut(s)	22, 392, 877
BceAI	ACGGC	3 cut(s)	800, 947, 969
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	2 cut(s)	561, 735
BcnI	CCSGG	3 cut(s)	905, 906, 1562
BcoDI	GTCTC	4 cut(s)	263, 528, 1225, 1270
BcuI	ACTAGT	1 cut(s)	1174
BfaI	CTAG	5 cut(s)	417, 458, 828, 1121, 1175
BfmI	CTRYAG	1 cut(s)	1355
BfoI	RGCGCY	2 cut(s)	804, 1044
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	6 cut(s)	700, 799, 982, 1196, 1199, 1355
BlpI	GCTNAGC	1 cut(s)	1373
BlsI	GCNGC	6 cut(s)	701, 800, 983, 1197, 1200, 1356
Bme1390I	CCNGG	4 cut(s)	209, 905, 906, 1562
Bme18I	GGWCC	5 cut(s)	118, 661, 1169, 1492, 1551
BmeRI	GACNNNNNGTC	1 cut(s)	1175
BmeT110I	CYCGRG	3 cut(s)	904, 1222, 1367
BmgT120I	GGNCC	6 cut(s)	83, 118, 661, 1169, 1492, 1551
BmiI	GGNNCC	4 cut(s)	85, 119, 902, 1493
BmrFI	CCNGG	4 cut(s)	209, 905, 906, 1562
BmrI	ACTGGG	1 cut(s)	1607
BmsI	GCATC	2 cut(s)	286, 1403
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	1607
BoxI	GACNNNNGTC	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	1373
Bpu14I	TTCGAA	2 cut(s)	648, 1027
BpuEI	CTTGAG	1 cut(s)	1079
BpuMI	CCSGG	3 cut(s)	905, 906, 1562
BsaI	GGTCTC	2 cut(s)	1225, 1270
BsaJI	CCNNGG	5 cut(s)	64, 606, 657, 904, 1586
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	4 cut(s)	247, 260, 277, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 670, 1560
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	27, 639, 1613
Bse21I	CCTNAGG	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	5 cut(s)	64, 606, 657, 904, 1586
BseGI	GGATG	3 cut(s)	546, 1354, 1407
BseLI	CCNNNNNNNGG	3 cut(s)	92, 670, 1560
BseMII	CTCAG	5 cut(s)	42, 237, 274, 870, 1387
BseNI	ACTGG	3 cut(s)	27, 639, 1613
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	1326
BseXI	GCAGC	5 cut(s)	711, 810, 1185, 1207, 1341
BseYI	CCCAGC	1 cut(s)	803
BsgI	GTGCAG	2 cut(s)	817, 1394
Bsh1236I	CGCG	2 cut(s)	301, 1331
Bsh1285I	CGRYCG	1 cut(s)	1051
BshFI	GGCC	4 cut(s)	26, 84, 212, 611
BshNI	GGYRCC	1 cut(s)	900
BsiEI	CGRYCG	1 cut(s)	1051
BsiHKAI	GWGCWC	5 cut(s)	634, 645, 878, 1326, 1374
BsiHKCI	CYCGRG	3 cut(s)	904, 1222, 1367
BsiSI	CCGG	6 cut(s)	81, 93, 121, 134, 905, 1561
BslFI	GGGAC	1 cut(s)	1505
BslI	CCNNNNNNNGG	3 cut(s)	92, 670, 1560
BsmAI	GTCTC	4 cut(s)	263, 528, 1225, 1270
BsmBI	CGTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	1505
BsnI	GGCC	4 cut(s)	26, 84, 212, 611
Bso31I	GGTCTC	2 cut(s)	1225, 1270
BsoBI	CYCGRG	3 cut(s)	904, 1222, 1367
Bsp119I	TTCGAA	2 cut(s)	648, 1027
Bsp1286I	GDGCHC	5 cut(s)	634, 645, 878, 1326, 1374
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
Bsp1720I	GCTNAGC	1 cut(s)	1373
Bsp19I	CCATGG	1 cut(s)	1586
BspACI	CCGC	6 cut(s)	729, 946, 960, 982, 1329, 1549
BspANI	GGCC	4 cut(s)	26, 84, 212, 611
BspCNI	CTCAG	5 cut(s)	43, 238, 273, 871, 1386
BspEI	TCCGGA	1 cut(s)	120
BspFNI	CGCG	2 cut(s)	301, 1331
BspHI	TCATGA	1 cut(s)	1617
BspLI	GGNNCC	4 cut(s)	85, 119, 902, 1493
BspMAI	CTGCAG	1 cut(s)	1359
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	77, 815
BspQI	GCTCTTC	1 cut(s)	650
BspT104I	TTCGAA	2 cut(s)	648, 1027
BspT107I	GGYRCC	1 cut(s)	900
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	2 cut(s)	1225, 1270
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	27, 639, 1613
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	5 cut(s)	64, 606, 657, 904, 1586
BssMI	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	657, 1586
Bst1107I	GTATAC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	6 cut(s)	65, 319, 938, 998, 1052, 1342
Bst6I	CTCTTC	2 cut(s)	650, 1478
BstAFI	CTTAAG	1 cut(s)	158
BstAPI	GCANNNNNTGC	2 cut(s)	795, 954
BstBI	TTCGAA	2 cut(s)	648, 1027
BstC8I	GCNNGC	8 cut(s)	94, 98, 406, 459, 1302, 1322, 1333, 1455
BstDEI	CTNAG	6 cut(s)	51, 246, 260, 669, 879, 1373
BstDSI	CCRYGG	2 cut(s)	64, 1586
BstF5I	GGATG	3 cut(s)	546, 1354, 1407
BstFNI	CGCG	2 cut(s)	301, 1331
BstH2I	RGCGCY	2 cut(s)	804, 1044
BstHHI	GCGC	4 cut(s)	301, 803, 1043, 1560
BstKTI	GATC	9 cut(s)	40, 57, 72, 310, 427, 564, 738, 810, 1110
BstMAI	GTCTC	4 cut(s)	263, 528, 1225, 1270
BstMBI	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
BstMCI	CGRYCG	1 cut(s)	1051
BstMWI	GCNNNNNNNGC	4 cut(s)	795, 954, 1351, 1555
BstNI	CCWGG	1 cut(s)	209
BstPAI	GACNNNNGTC	1 cut(s)	659
BstSCI	CCNGG	4 cut(s)	207, 903, 904, 1560
BstSFI	CTRYAG	1 cut(s)	1355
BstSLI	GKGCMC	1 cut(s)	1326
BstUI	CGCG	2 cut(s)	301, 1331
BstV1I	GCAGC	5 cut(s)	711, 810, 1185, 1207, 1341
BstZ17I	GTATAC	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	26, 84, 212, 611
BtgI	CCRYGG	2 cut(s)	64, 1586
BtsCI	GGATG	3 cut(s)	546, 1354, 1407
BtsI	GCAGTG	3 cut(s)	579, 916, 1406
Cac8I	GCNNGC	8 cut(s)	94, 98, 406, 459, 1302, 1322, 1333, 1455
CciI	TCATGA	1 cut(s)	1617
CfoI	GCGC	4 cut(s)	301, 803, 1043, 1560
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	6 cut(s)	83, 118, 661, 1169, 1492, 1551
Cfr9I	CCCGGG	1 cut(s)	904
CseI	GACGC	1 cut(s)	1148
Csp6I	GTAC	3 cut(s)	163, 901, 1069
CviQI	GTAC	3 cut(s)	163, 901, 1069
DdeI	CTNAG	6 cut(s)	51, 246, 260, 669, 879, 1373
DpnI	GATC	9 cut(s)	39, 56, 71, 309, 426, 563, 737, 809, 1109
DpnII	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
DriI	GACNNNNNGTC	1 cut(s)	1175
EaeI	YGGCCR	2 cut(s)	24, 210
Eam1104I	CTCTTC	2 cut(s)	650, 1478
Eam1105I	GACNNNNNGTC	1 cut(s)	1175
EarI	CTCTTC	2 cut(s)	650, 1478
EciI	GGCGGA	2 cut(s)	718, 949
Ecl136II	GAGCTC	2 cut(s)	643, 1372
Eco130I	CCWWGG	2 cut(s)	657, 1586
Eco147I	AGGCCT	1 cut(s)	611
Eco24I	GRGCYC	2 cut(s)	645, 1374
Eco31I	GGTCTC	2 cut(s)	1225, 1270
Eco47I	GGWCC	5 cut(s)	118, 661, 1169, 1492, 1551
Eco47III	AGCGCT	1 cut(s)	802
Eco53kI	GAGCTC	2 cut(s)	643, 1372
Eco57I	CTGAAG	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	669
Eco88I	CYCGRG	3 cut(s)	904, 1222, 1367
EcoICRI	GAGCTC	2 cut(s)	643, 1372
EcoRI	GAATTC	2 cut(s)	497, 510
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	657, 1586
EcoT38I	GRGCYC	2 cut(s)	645, 1374
ErhI	CCWWGG	2 cut(s)	657, 1586
Esp3I	CGTCTC	1 cut(s)	528
FaqI	GGGAC	1 cut(s)	1505
FauNDI	CATATG	1 cut(s)	1442
FbaI	TGATCA	2 cut(s)	561, 735
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	6 cut(s)	700, 799, 982, 1196, 1199, 1355
FokI	GGATG	3 cut(s)	533, 1361, 1414
FriOI	GRGCYC	2 cut(s)	645, 1374
Fsp4HI	GCNGC	6 cut(s)	700, 799, 982, 1196, 1199, 1355
FspBI	CTAG	5 cut(s)	417, 458, 828, 1121, 1175
GlaI	GCGC	4 cut(s)	300, 802, 1042, 1559
GluI	GCNGC	6 cut(s)	700, 799, 982, 1196, 1199, 1355
GsaI	CCCAGC	1 cut(s)	807
HaeII	RGCGCY	2 cut(s)	804, 1044
HaeIII	GGCC	4 cut(s)	26, 84, 212, 611
HapII	CCGG	6 cut(s)	81, 93, 121, 134, 905, 1561
HgaI	GACGC	1 cut(s)	1148
HhaI	GCGC	4 cut(s)	301, 803, 1043, 1560
Hin6I	GCGC	4 cut(s)	299, 801, 1041, 1558
HinP1I	GCGC	4 cut(s)	299, 801, 1041, 1558
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	6 cut(s)	74, 256, 505, 1092, 1524, 1582
HpaII	CCGG	6 cut(s)	81, 93, 121, 134, 905, 1561
HphI	GGTGA	9 cut(s)	163, 340, 404, 556, 631, 703, 883, 1148, 1150
Hpy166II	GTNNAC	6 cut(s)	61, 154, 348, 361, 1069, 1324
Hpy188I	TCNGA	4 cut(s)	19, 629, 1169, 1192
Hpy188III	TCNNGA	6 cut(s)	121, 502, 1222, 1289, 1521, 1618
Hpy8I	GTNNAC	6 cut(s)	61, 154, 348, 361, 1069, 1324
Hpy99I	CGWCG	2 cut(s)	425, 1382
HpyAV	CCTTC	3 cut(s)	590, 1195, 1584
HpyCH4III	ACNGT	6 cut(s)	65, 319, 938, 998, 1052, 1342
HpyCH4IV	ACGT	3 cut(s)	104, 165, 675
HpyCH4V	TGCA	9 cut(s)	314, 584, 699, 798, 1324, 1357, 1411, 1533, 1599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	795, 954, 1351, 1555
HpyF3I	CTNAG	6 cut(s)	51, 246, 260, 669, 879, 1373
HpySE526I	ACGT	3 cut(s)	104, 165, 675
HspAI	GCGC	4 cut(s)	299, 801, 1041, 1558
Kpn2I	TCCGGA	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	904
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	2 cut(s)	561, 735
Kzo9I	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	7 cut(s)	271, 386, 442, 629, 962, 1192, 1244
Lsp1109I	GCAGC	5 cut(s)	711, 810, 1185, 1207, 1341
LweI	GCATC	2 cut(s)	286, 1403
MaeI	CTAG	5 cut(s)	417, 458, 828, 1121, 1175
MaeII	ACGT	3 cut(s)	104, 165, 675
MaeIII	GTNAC	5 cut(s)	369, 911, 986, 1136, 1421
MalI	GATC	9 cut(s)	39, 56, 71, 309, 426, 563, 737, 809, 1109
MboI	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
MboII	GAAGA	6 cut(s)	292, 637, 934, 1088, 1091, 1495
MhlI	GDGCHC	5 cut(s)	634, 645, 878, 1326, 1374
MlsI	TGGCCA	2 cut(s)	26, 212
MluCI	AATT	7 cut(s)	446, 497, 510, 694, 895, 1128, 1621
MluNI	TGGCCA	2 cut(s)	26, 212
MlyI	GAGTC	4 cut(s)	83, 265, 499, 1086
Mox20I	TGGCCA	2 cut(s)	26, 212
MroI	TCCGGA	1 cut(s)	120
MroNI	GCCGGC	1 cut(s)	92
MscI	TGGCCA	2 cut(s)	26, 212
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	2 cut(s)	881, 1309
Msp20I	TGGCCA	2 cut(s)	26, 212
MspA1I	CMGCKG	1 cut(s)	1198
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	6 cut(s)	81, 93, 121, 134, 905, 1561
MspR9I	CCNGG	4 cut(s)	209, 905, 906, 1562
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	2 cut(s)	301, 1331
MwoI	GCNNNNNNNGC	4 cut(s)	795, 954, 1351, 1555
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	3 cut(s)	905, 906, 1562
NcoI	CCATGG	1 cut(s)	1586
NdeI	CATATG	1 cut(s)	1442
NdeII	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
NgoMIV	GCCGGC	1 cut(s)	92
NheI	GCTAGC	1 cut(s)	457
NlaIV	GGNNCC	4 cut(s)	85, 119, 902, 1493
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	4 cut(s)	369, 911, 986, 1136
NspV	TTCGAA	2 cut(s)	648, 1027
PaeR7I	CTCGAG	2 cut(s)	1222, 1367
PagI	TCATGA	1 cut(s)	1617
PceI	AGGCCT	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	3 cut(s)	645, 1020, 1374
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	1524, 1582
PkrI	GCNGC	6 cut(s)	701, 800, 983, 1197, 1200, 1356
PleI	GAGTC	4 cut(s)	82, 264, 499, 1086
PpsI	GAGTC	4 cut(s)	82, 264, 499, 1086
PshAI	GACNNNNGTC	1 cut(s)	659
Psp124BI	GAGCTC	2 cut(s)	645, 1374
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	85, 119, 902, 1493
PspPI	GGNCC	6 cut(s)	83, 118, 661, 1169, 1492, 1551
PspXI	VCTCGAGB	1 cut(s)	1367
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PstI	CTGCAG	1 cut(s)	1359
PvuII	CAGCTG	1 cut(s)	1198
RsaI	GTAC	3 cut(s)	164, 902, 1070
RsaNI	GTAC	3 cut(s)	163, 901, 1069
RseI	CAYNNNNRTG	2 cut(s)	881, 1309
SacI	GAGCTC	2 cut(s)	645, 1374
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	6 cut(s)	700, 799, 982, 1196, 1199, 1355
Sau3AI	GATC	9 cut(s)	37, 54, 69, 307, 424, 561, 735, 807, 1107
Sau96I	GGNCC	6 cut(s)	83, 118, 661, 1169, 1492, 1551
SchI	GAGTC	4 cut(s)	83, 265, 499, 1086
ScrFI	CCNGG	4 cut(s)	209, 905, 906, 1562
SduI	GDGCHC	5 cut(s)	634, 645, 878, 1326, 1374
SfaNI	GCATC	2 cut(s)	286, 1403
SfcI	CTRYAG	1 cut(s)	1355
Sfr274I	CTCGAG	2 cut(s)	1222, 1367
SfuI	TTCGAA	2 cut(s)	648, 1027
SinI	GGWCC	5 cut(s)	118, 661, 1169, 1492, 1551
SlaI	CTCGAG	2 cut(s)	1222, 1367
SmaI	CCCGGG	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	881, 1309
SmlI	CTYRAG	4 cut(s)	158, 1094, 1222, 1367
SmoI	CTYRAG	4 cut(s)	158, 1094, 1222, 1367
SpeI	ACTAGT	1 cut(s)	1174
Sse9I	AATT	7 cut(s)	446, 497, 510, 694, 895, 1128, 1621
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	6 cut(s)	729, 946, 960, 982, 1329, 1549
SspMI	CTAG	5 cut(s)	417, 458, 828, 1121, 1175
SstI	GAGCTC	2 cut(s)	645, 1374
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	4 cut(s)	207, 903, 904, 1560
StyI	CCWWGG	2 cut(s)	657, 1586
TaaI	ACNGT	6 cut(s)	65, 319, 938, 998, 1052, 1342
TaiI	ACGT	3 cut(s)	107, 168, 678
TaqII	GACCGA	1 cut(s)	1509
TasI	AATT	7 cut(s)	446, 497, 510, 694, 895, 1128, 1621
TauI	GCSGC	1 cut(s)	984
TfiI	GAWTC	2 cut(s)	1524, 1582
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	4 cut(s)	369, 911, 986, 1136
TseI	GCWGC	5 cut(s)	699, 798, 1195, 1198, 1354
Tsp45I	GTSAC	4 cut(s)	369, 911, 986, 1136
TspDTI	ATGAA	4 cut(s)	355, 439, 498, 605
TspGWI	ACGGA	2 cut(s)	100, 653
TspMI	CCCGGG	1 cut(s)	904
Vha464I	CTTAAG	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	1322
VpaK11BI	GGWCC	5 cut(s)	118, 661, 1169, 1492, 1551
XapI	RAATTY	2 cut(s)	497, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	2 cut(s)	1222, 1367
XmaI	CCCGGG	1 cut(s)	904
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	5 cut(s)	417, 458, 828, 1121, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.