3-ketoacyl-CoA synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G26250 |
| fragaria_vesca | FvH4_2g36990 |
| malus_domestica | MD08G1046600.v1.1 |
| prunus_persica | Prupe.1G401500_v2.0.a1 |
| pyrus_communis | pycom08g03880 pycom15g04560 |
| rosa_chinensis | RchiOBHm_Chr6g0304771 |
| rosa_laevigata | RLG00000010951 |
| rosa_multiflora | Rmu_sc0003120.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00163510 |
| rosa_rugosa | Rorug06G0334400 |
| rosa_samantha | Rh6AG446300 Rh6BG455300 Rh6CG459800 Rh6DG446600 |
| rosa_wichuraiana | Rw6G038830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 563 |
| AbsI | CCTCGAGG | 1 cut(s) | 1462 |
| Acc16I | TGCGCA | 1 cut(s) | 119 |
| Acc36I | ACCTGC | 1 cut(s) | 434 |
| Acc65I | GGTACC | 2 cut(s) | 174, 783 |
| AccB1I | GGYRCC | 3 cut(s) | 174, 783, 1110 |
| AccI | GTMKAC | 1 cut(s) | 452 |
| AccII | CGCG | 1 cut(s) | 870 |
| AccIII | TCCGGA | 1 cut(s) | 1174 |
| AciI | CCGC | 6 cut(s) | 124, 843, 865, 868, 1300, 1435 |
| AcoI | YGGCCR | 2 cut(s) | 21, 207 |
| AcsI | RAATTY | 4 cut(s) | 359, 380, 393, 400 |
| AcuI | CTGAAG | 1 cut(s) | 1007 |
| AfaI | GTAC | 5 cut(s) | 176, 760, 785, 890, 953 |
| AfeI | AGCGCT | 1 cut(s) | 1199 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 89, 490, 553, 891, 1050 |
| AflIII | ACRYGT | 1 cut(s) | 1311 |
| AjiI | CACGTC | 1 cut(s) | 1314 |
| AjnI | CCWGG | 2 cut(s) | 787, 1121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 378, 410 |
| AluBI | AGCT | 9 cut(s) | 271, 283, 488, 526, 657, 1081, 1186, 1240, 1258 |
| AluI | AGCT | 9 cut(s) | 271, 283, 488, 526, 657, 1081, 1186, 1240, 1258 |
| Alw21I | GWGCWC | 2 cut(s) | 528, 1233 |
| Alw26I | GTCTC | 5 cut(s) | 322, 411, 416, 708, 1156 |
| Ama87I | CYCGRG | 2 cut(s) | 1253, 1462 |
| Aor13HI | TCCGGA | 1 cut(s) | 1174 |
| Aor51HI | AGCGCT | 1 cut(s) | 1199 |
| AoxI | GGCC | 7 cut(s) | 21, 79, 207, 481, 492, 1052, 1278 |
| ApeKI | GCWGC | 7 cut(s) | 127, 1063, 1078, 1214, 1240, 1320, 1323 |
| ApoI | RAATTY | 4 cut(s) | 359, 380, 393, 400 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 512, 544 |
| Asp718I | GGTACC | 2 cut(s) | 174, 783 |
| AspLEI | GCGC | 4 cut(s) | 120, 926, 1200, 1446 |
| AspS9I | GGNCC | 4 cut(s) | 80, 544, 801, 1052 |
| AsuHPI | GGTGA | 5 cut(s) | 766, 869, 1031, 1033, 1378 |
| AvaI | CYCGRG | 2 cut(s) | 1253, 1462 |
| AvaII | GGWCC | 2 cut(s) | 544, 801 |
| BaeGI | GKGCMC | 1 cut(s) | 517 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 775, 808 |
| BalI | TGGCCA | 2 cut(s) | 23, 209 |
| BanI | GGYRCC | 3 cut(s) | 174, 783, 1110 |
| BanII | GRGCYC | 1 cut(s) | 528 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 158, 190 |
| Bbv12I | GWGCWC | 2 cut(s) | 528, 1233 |
| BbvCI | CCTCAGC | 2 cut(s) | 243, 489 |
| BbvI | GCAGC | 7 cut(s) | 114, 1050, 1090, 1226, 1227, 1332, 1335 |
| BccI | CCATC | 1 cut(s) | 221 |
| BceAI | ACGGC | 3 cut(s) | 480, 683, 1039 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 333, 367, 1408, 1442 |
| BciT130I | CCWGG | 2 cut(s) | 789, 1123 |
| BclI | TGATCA | 1 cut(s) | 618 |
| BcoDI | GTCTC | 5 cut(s) | 322, 411, 416, 708, 1156 |
| BfaI | CTAG | 6 cut(s) | 308, 377, 540, 569, 711, 1284 |
| BfmI | CTRYAG | 1 cut(s) | 1241 |
| BfoI | RGCGCY | 2 cut(s) | 927, 1201 |
| BfuAI | ACCTGC | 1 cut(s) | 434 |
| BglII | AGATCT | 1 cut(s) | 34 |
| BmcAI | AGTACT | 1 cut(s) | 760 |
| Bme1390I | CCNGG | 2 cut(s) | 789, 1123 |
| Bme18I | GGWCC | 2 cut(s) | 544, 801 |
| BmeT110I | CYCGRG | 2 cut(s) | 1253, 1462 |
| BmgBI | CACGTC | 1 cut(s) | 1314 |
| BmgT120I | GGNCC | 4 cut(s) | 80, 544, 801, 1052 |
| BmiI | GGNNCC | 8 cut(s) | 82, 94, 176, 545, 785, 1053, 1112, 1250 |
| BmrFI | CCNGG | 2 cut(s) | 789, 1123 |
| BmsI | GCATC | 7 cut(s) | 283, 438, 594, 827, 1012, 1431, 1434 |
| BoxI | GACNNNNGTC | 1 cut(s) | 542 |
| Bpu10I | CCTNAGC | 3 cut(s) | 243, 412, 489 |
| BsaI | GGTCTC | 2 cut(s) | 416, 1156 |
| BsaJI | CCNNGG | 5 cut(s) | 18, 61, 787, 1122, 1472 |
| BsaWI | WCCGGW | 1 cut(s) | 1174 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 257, 287, 555, 585, 1368, 1398 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 89, 490, 553, 891, 1050 |
| Bse118I | RCCGGY | 1 cut(s) | 891 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse3DI | GCAATG | 1 cut(s) | 621 |
| BseAI | TCCGGA | 1 cut(s) | 1174 |
| BseBI | CCWGG | 2 cut(s) | 789, 1123 |
| BseDI | CCNNGG | 5 cut(s) | 18, 61, 787, 1122, 1472 |
| BseGI | GGATG | 5 cut(s) | 213, 295, 429, 842, 1293 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 89, 490, 553, 891, 1050 |
| BseMI | GCAATG | 1 cut(s) | 621 |
| BseMII | CTCAG | 6 cut(s) | 39, 234, 480, 753, 1065, 1250 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BseRI | GAGGAG | 3 cut(s) | 281, 1073, 1389 |
| BseSI | GKGCMC | 1 cut(s) | 517 |
| BseXI | GCAGC | 7 cut(s) | 114, 1050, 1090, 1226, 1227, 1332, 1335 |
| BsgI | GTGCAG | 1 cut(s) | 700 |
| Bsh1236I | CGCG | 1 cut(s) | 870 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1439 |
| BshFI | GGCC | 7 cut(s) | 23, 81, 209, 483, 494, 1054, 1280 |
| BshNI | GGYRCC | 3 cut(s) | 174, 783, 1110 |
| BsiEI | CGRYCG | 1 cut(s) | 1439 |
| BsiHKAI | GWGCWC | 2 cut(s) | 528, 1233 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1253, 1462 |
| BsiSI | CCGG | 5 cut(s) | 78, 131, 687, 892, 1175 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 89, 490, 553, 891, 1050 |
| BsmAI | GTCTC | 5 cut(s) | 322, 411, 416, 708, 1156 |
| BsmBI | CGTCTC | 2 cut(s) | 322, 411 |
| BsnI | GGCC | 7 cut(s) | 23, 81, 209, 483, 494, 1054, 1280 |
| Bso31I | GGTCTC | 2 cut(s) | 416, 1156 |
| BsoBI | CYCGRG | 2 cut(s) | 1253, 1462 |
| Bsp1286I | GDGCHC | 3 cut(s) | 517, 528, 1233 |
| Bsp13I | TCCGGA | 1 cut(s) | 1174 |
| Bsp143I | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| Bsp19I | CCATGG | 2 cut(s) | 18, 1472 |
| BspACI | CCGC | 6 cut(s) | 124, 843, 865, 868, 1300, 1435 |
| BspANI | GGCC | 7 cut(s) | 23, 81, 209, 483, 494, 1054, 1280 |
| BspCNI | CTCAG | 6 cut(s) | 40, 235, 481, 754, 1066, 1251 |
| BspEI | TCCGGA | 1 cut(s) | 1174 |
| BspFNI | CGCG | 1 cut(s) | 870 |
| BspLI | GGNNCC | 8 cut(s) | 82, 94, 176, 545, 785, 1053, 1112, 1250 |
| BspMAI | CTGCAG | 1 cut(s) | 1245 |
| BspMI | ACCTGC | 1 cut(s) | 434 |
| BspT107I | GGYRCC | 3 cut(s) | 174, 783, 1110 |
| BspTNI | GGTCTC | 2 cut(s) | 416, 1156 |
| BsrDI | GCAATG | 1 cut(s) | 621 |
| BsrFI | RCCGGY | 1 cut(s) | 891 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssAI | RCCGGY | 1 cut(s) | 891 |
| BssECI | CCNNGG | 5 cut(s) | 18, 61, 787, 1122, 1472 |
| BssMI | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| BssT1I | CCWWGG | 2 cut(s) | 18, 1472 |
| Bst2UI | CCWGG | 2 cut(s) | 789, 1123 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 316, 881, 1228 |
| Bst6I | CTCTTC | 2 cut(s) | 1091, 1364 |
| BstC8I | GCNNGC | 6 cut(s) | 91, 122, 373, 1188, 1212, 1219 |
| BstDEI | CTNAG | 8 cut(s) | 48, 243, 321, 412, 489, 762, 1074, 1259 |
| BstDSI | CCRYGG | 3 cut(s) | 18, 61, 1472 |
| BstF5I | GGATG | 5 cut(s) | 213, 295, 429, 842, 1293 |
| BstFNI | CGCG | 1 cut(s) | 870 |
| BstH2I | RGCGCY | 2 cut(s) | 927, 1201 |
| BstHHI | GCGC | 4 cut(s) | 120, 926, 1200, 1446 |
| BstKTI | GATC | 6 cut(s) | 37, 54, 621, 706, 934, 993 |
| BstMAI | GTCTC | 5 cut(s) | 322, 411, 416, 708, 1156 |
| BstMBI | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| BstMCI | CGRYCG | 1 cut(s) | 1439 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 124, 1060, 1237, 1441 |
| BstNI | CCWGG | 2 cut(s) | 789, 1123 |
| BstNSI | RCATGY | 2 cut(s) | 721, 1214 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 542 |
| BstSCI | CCNGG | 2 cut(s) | 787, 1121 |
| BstSFI | CTRYAG | 1 cut(s) | 1241 |
| BstSLI | GKGCMC | 1 cut(s) | 517 |
| BstUI | CGCG | 1 cut(s) | 870 |
| BstV1I | GCAGC | 7 cut(s) | 114, 1050, 1090, 1226, 1227, 1332, 1335 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 205 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| BsuRI | GGCC | 7 cut(s) | 23, 81, 209, 483, 494, 1054, 1280 |
| BtgI | CCRYGG | 3 cut(s) | 18, 61, 1472 |
| BtrI | CACGTC | 1 cut(s) | 1314 |
| BtsCI | GGATG | 5 cut(s) | 213, 295, 429, 842, 1293 |
| BtsI | GCAGTG | 1 cut(s) | 688 |
| BtsIMutI | CAGTG | 3 cut(s) | 31, 45, 688 |
| BveI | ACCTGC | 1 cut(s) | 434 |
| Cac8I | GCNNGC | 6 cut(s) | 91, 122, 373, 1188, 1212, 1219 |
| CfoI | GCGC | 4 cut(s) | 120, 926, 1200, 1446 |
| Cfr10I | RCCGGY | 1 cut(s) | 891 |
| Cfr13I | GGNCC | 4 cut(s) | 80, 544, 801, 1052 |
| CseI | GACGC | 2 cut(s) | 1140, 1300 |
| Csp6I | GTAC | 5 cut(s) | 175, 759, 784, 889, 952 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 649, 684 |
| CviQI | GTAC | 5 cut(s) | 175, 759, 784, 889, 952 |
| DdeI | CTNAG | 8 cut(s) | 48, 243, 321, 412, 489, 762, 1074, 1259 |
| DpnI | GATC | 6 cut(s) | 36, 53, 620, 705, 933, 992 |
| DpnII | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 563 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 563 |
| EaeI | YGGCCR | 2 cut(s) | 21, 207 |
| Eam1104I | CTCTTC | 2 cut(s) | 1091, 1364 |
| EarI | CTCTTC | 2 cut(s) | 1091, 1364 |
| Ecl136II | GAGCTC | 1 cut(s) | 526 |
| Eco130I | CCWWGG | 2 cut(s) | 18, 1472 |
| Eco147I | AGGCCT | 2 cut(s) | 494, 1280 |
| Eco24I | GRGCYC | 1 cut(s) | 528 |
| Eco31I | GGTCTC | 2 cut(s) | 416, 1156 |
| Eco47I | GGWCC | 2 cut(s) | 544, 801 |
| Eco47III | AGCGCT | 1 cut(s) | 1199 |
| Eco53kI | GAGCTC | 1 cut(s) | 526 |
| Eco57I | CTGAAG | 1 cut(s) | 1007 |
| Eco88I | CYCGRG | 2 cut(s) | 1253, 1462 |
| EcoICRI | GAGCTC | 1 cut(s) | 526 |
| EcoRI | GAATTC | 2 cut(s) | 380, 393 |
| EcoRII | CCWGG | 2 cut(s) | 787, 1121 |
| EcoT14I | CCWWGG | 2 cut(s) | 18, 1472 |
| EcoT38I | GRGCYC | 1 cut(s) | 528 |
| ErhI | CCWWGG | 2 cut(s) | 18, 1472 |
| Esp3I | CGTCTC | 2 cut(s) | 322, 411 |
| FauNDI | CATATG | 1 cut(s) | 1328 |
| FbaI | TGATCA | 1 cut(s) | 618 |
| FblI | GTMKAC | 1 cut(s) | 452 |
| FokI | GGATG | 5 cut(s) | 200, 302, 416, 849, 1300 |
| FriOI | GRGCYC | 1 cut(s) | 528 |
| FspBI | CTAG | 6 cut(s) | 308, 377, 540, 569, 711, 1284 |
| FspI | TGCGCA | 1 cut(s) | 119 |
| GlaI | GCGC | 4 cut(s) | 119, 925, 1199, 1445 |
| HaeII | RGCGCY | 2 cut(s) | 927, 1201 |
| HaeIII | GGCC | 7 cut(s) | 23, 81, 209, 483, 494, 1054, 1280 |
| HapII | CCGG | 5 cut(s) | 78, 131, 687, 892, 1175 |
| HgaI | GACGC | 2 cut(s) | 1140, 1300 |
| HhaI | GCGC | 4 cut(s) | 120, 926, 1200, 1446 |
| Hin6I | GCGC | 4 cut(s) | 118, 924, 1198, 1444 |
| HinP1I | GCGC | 4 cut(s) | 118, 924, 1198, 1444 |
| HincII | GTYRAC | 2 cut(s) | 58, 453 |
| HindII | GTYRAC | 2 cut(s) | 58, 453 |
| HindIII | AAGCTT | 1 cut(s) | 281 |
| HinfI | GANTC | 6 cut(s) | 71, 564, 690, 1410, 1468, 1504 |
| HpaII | CCGG | 5 cut(s) | 78, 131, 687, 892, 1175 |
| HphI | GGTGA | 5 cut(s) | 766, 869, 1031, 1033, 1378 |
| Hpy166II | GTNNAC | 5 cut(s) | 45, 58, 151, 453, 952 |
| Hpy188I | TCNGA | 6 cut(s) | 552, 816, 912, 936, 1075, 1138 |
| Hpy188III | TCNNGA | 2 cut(s) | 1175, 1407 |
| Hpy8I | GTNNAC | 5 cut(s) | 45, 58, 151, 453, 952 |
| Hpy99I | CGWCG | 5 cut(s) | 368, 457, 524, 1238, 1318 |
| HpyAV | CCTTC | 4 cut(s) | 473, 547, 973, 1357 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 316, 881, 1228 |
| HpyCH4IV | ACGT | 5 cut(s) | 101, 298, 558, 1313, 1449 |
| HpyCH4V | TGCA | 9 cut(s) | 296, 429, 614, 681, 1210, 1214, 1243, 1419, 1485 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 124, 1060, 1237, 1441 |
| HpyF3I | CTNAG | 8 cut(s) | 48, 243, 321, 412, 489, 762, 1074, 1259 |
| HpySE526I | ACGT | 5 cut(s) | 101, 298, 558, 1313, 1449 |
| HspAI | GCGC | 4 cut(s) | 118, 924, 1198, 1444 |
| Kpn2I | TCCGGA | 1 cut(s) | 1174 |
| KpnI | GGTACC | 2 cut(s) | 178, 787 |
| Ksp22I | TGATCA | 1 cut(s) | 618 |
| Kzo9I | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| LmnI | GCTCC | 4 cut(s) | 98, 268, 845, 1086 |
| Lsp1109I | GCAGC | 7 cut(s) | 114, 1050, 1090, 1226, 1227, 1332, 1335 |
| LweI | GCATC | 7 cut(s) | 283, 438, 594, 827, 1012, 1431, 1434 |
| MaeI | CTAG | 6 cut(s) | 308, 377, 540, 569, 711, 1284 |
| MaeII | ACGT | 5 cut(s) | 101, 298, 558, 1313, 1449 |
| MaeIII | GTNAC | 1 cut(s) | 1152 |
| MalI | GATC | 6 cut(s) | 36, 53, 620, 705, 933, 992 |
| MboI | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| MboII | GAAGA | 6 cut(s) | 289, 580, 974, 1000, 1078, 1381 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MhlI | GDGCHC | 3 cut(s) | 517, 528, 1233 |
| MlsI | TGGCCA | 2 cut(s) | 23, 209 |
| MluNI | TGGCCA | 2 cut(s) | 23, 209 |
| MlyI | GAGTC | 2 cut(s) | 80, 573 |
| Mox20I | TGGCCA | 2 cut(s) | 23, 209 |
| MroI | TCCGGA | 1 cut(s) | 1174 |
| MscI | TGGCCA | 2 cut(s) | 23, 209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| Msp20I | TGGCCA | 2 cut(s) | 23, 209 |
| MspA1I | CMGCKG | 1 cut(s) | 845 |
| MspI | CCGG | 5 cut(s) | 78, 131, 687, 892, 1175 |
| MspR9I | CCNGG | 2 cut(s) | 789, 1123 |
| MvaI | CCWGG | 2 cut(s) | 789, 1123 |
| MvnI | CGCG | 1 cut(s) | 870 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 124, 1060, 1237, 1441 |
| NcoI | CCATGG | 2 cut(s) | 18, 1472 |
| NdeI | CATATG | 1 cut(s) | 1328 |
| NdeII | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| NlaIV | GGNNCC | 8 cut(s) | 82, 94, 176, 545, 785, 1053, 1112, 1250 |
| NmeAIII | GCCGAG | 1 cut(s) | 509 |
| NmuCI | GTSAC | 1 cut(s) | 1152 |
| NsbI | TGCGCA | 1 cut(s) | 119 |
| NspI | RCATGY | 2 cut(s) | 721, 1214 |
| PaeI | GCATGC | 1 cut(s) | 1214 |
| PaeR7I | CTCGAG | 2 cut(s) | 1253, 1462 |
| PceI | AGGCCT | 2 cut(s) | 494, 1280 |
| PfeI | GAWTC | 4 cut(s) | 690, 1410, 1468, 1504 |
| PleI | GAGTC | 2 cut(s) | 79, 572 |
| PpsI | GAGTC | 2 cut(s) | 79, 572 |
| PshAI | GACNNNNGTC | 1 cut(s) | 542 |
| Psp124BI | GAGCTC | 1 cut(s) | 528 |
| Psp6I | CCWGG | 2 cut(s) | 787, 1121 |
| PspGI | CCWGG | 2 cut(s) | 787, 1121 |
| PspN4I | GGNNCC | 8 cut(s) | 82, 94, 176, 545, 785, 1053, 1112, 1250 |
| PspPI | GGNCC | 4 cut(s) | 80, 544, 801, 1052 |
| PspXI | VCTCGAGB | 2 cut(s) | 1253, 1462 |
| PstI | CTGCAG | 1 cut(s) | 1245 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| RsaI | GTAC | 5 cut(s) | 176, 760, 785, 890, 953 |
| RsaNI | GTAC | 5 cut(s) | 175, 759, 784, 889, 952 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SacI | GAGCTC | 1 cut(s) | 528 |
| SalI | GTCGAC | 1 cut(s) | 451 |
| Sau3AI | GATC | 6 cut(s) | 34, 51, 618, 703, 931, 990 |
| Sau96I | GGNCC | 4 cut(s) | 80, 544, 801, 1052 |
| ScaI | AGTACT | 1 cut(s) | 760 |
| SchI | GAGTC | 2 cut(s) | 80, 573 |
| ScrFI | CCNGG | 2 cut(s) | 789, 1123 |
| SduI | GDGCHC | 3 cut(s) | 517, 528, 1233 |
| SfaNI | GCATC | 7 cut(s) | 283, 438, 594, 827, 1012, 1431, 1434 |
| SfcI | CTRYAG | 1 cut(s) | 1241 |
| Sfr274I | CTCGAG | 2 cut(s) | 1253, 1462 |
| SinI | GGWCC | 2 cut(s) | 544, 801 |
| SlaI | CTCGAG | 2 cut(s) | 1253, 1462 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 2 cut(s) | 1253, 1462 |
| SmoI | CTYRAG | 2 cut(s) | 1253, 1462 |
| SphI | GCATGC | 1 cut(s) | 1214 |
| SseBI | AGGCCT | 2 cut(s) | 494, 1280 |
| SsiI | CCGC | 6 cut(s) | 124, 843, 865, 868, 1300, 1435 |
| SspMI | CTAG | 6 cut(s) | 308, 377, 540, 569, 711, 1284 |
| SstI | GAGCTC | 1 cut(s) | 528 |
| StuI | AGGCCT | 2 cut(s) | 494, 1280 |
| StyD4I | CCNGG | 2 cut(s) | 787, 1121 |
| StyI | CCWWGG | 2 cut(s) | 18, 1472 |
| TaaI | ACNGT | 4 cut(s) | 62, 316, 881, 1228 |
| TaiI | ACGT | 5 cut(s) | 104, 301, 561, 1316, 1452 |
| TaqI | TCGA | 9 cut(s) | 363, 452, 519, 1194, 1233, 1254, 1316, 1439, 1463 |
| TatI | WGTACW | 1 cut(s) | 758 |
| TauI | GCSGC | 3 cut(s) | 127, 867, 870 |
| TfiI | GAWTC | 4 cut(s) | 690, 1410, 1468, 1504 |
| TscAI | CASTG | 3 cut(s) | 31, 52, 688 |
| TseFI | GTSAC | 1 cut(s) | 1152 |
| TseI | GCWGC | 7 cut(s) | 127, 1063, 1078, 1214, 1240, 1320, 1323 |
| Tsp45I | GTSAC | 1 cut(s) | 1152 |
| TspDTI | ATGAA | 4 cut(s) | 322, 393, 488, 981 |
| TspGWI | ACGGA | 5 cut(s) | 97, 136, 430, 470, 536 |
| TspRI | CASTG | 3 cut(s) | 31, 52, 688 |
| VpaK11BI | GGWCC | 2 cut(s) | 544, 801 |
| XapI | RAATTY | 4 cut(s) | 359, 380, 393, 400 |
| XceI | RCATGY | 2 cut(s) | 721, 1214 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 892 |
| XhoI | CTCGAG | 2 cut(s) | 1253, 1462 |
| XmiI | GTMKAC | 1 cut(s) | 452 |
| XspI | CTAG | 6 cut(s) | 308, 377, 540, 569, 711, 1284 |
| ZrmI | AGTACT | 1 cut(s) | 760 |