pycom08g04570

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
3466860 .. 3468374
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGAAAAGGGCTGCTGGCAATTGTAAGCAATCTCAGCCTGCTGATGAGGAAACTAGGACAAAGTTCAGACATGAAAGTCTTCTGCAGGATTACCTTTTACGACGAAAGGAATTTGTATCAAAGAAACAGATGATGCAAGCTGCGAAGCAGAAAAGAGACATTCTTTTGGCGGAAATTCGATTTTTGAGACGAAGGTATAGCCATCTGCTGAAGATAAAATCAGCAGAAACCGAACCAGAAGTCCGACATCAGAATTCTGATGTACAGCCTAAGAAGTTGGCAAAGAAGAAAAAAGATGCTAATGAAGCTGTTGTAAATAAACCCTCTCGTGCCTCGCCGGAAGGAGGAGTAGAACACATTGTTTCGGAGCCCGTAAGAGTAGAGAAGAAGCGTAAAAATCATGTAGTTAATGGCAGAAAGGTTCGGAAGAAAAAAATTGCAGTGCAAGATCAGGTTTCTCTGAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.13

Weight (kDa)

10.4

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 75
AciI CCGC 1 cut(s) 170
AcsI RAATTY 3 cut(s) 110, 174, 253
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 344
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 140, 308
AluI AGCT 2 cut(s) 140, 308
Alw26I GTCTC 2 cut(s) 150, 181
ApeKI GCWGC 2 cut(s) 11, 140
ApoI RAATTY 3 cut(s) 110, 174, 253
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 372
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 150, 181
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 12, 141
BlsI GCNGC 2 cut(s) 13, 142
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 2 cut(s) 123, 286
BpiI GAAGAC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 150, 181
BsmBI CGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 262
BssMI GATC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 3 cut(s) 16, 39, 138
BstDEI CTNAG 2 cut(s) 33, 270
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 2 cut(s) 150, 181
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 34, 305
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 16, 39, 138
Csp6I GTAC 1 cut(s) 263
CviAII CATG 2 cut(s) 71, 401
CviJI RGCY 7 cut(s) 11, 37, 140, 201, 268, 308, 370
CviKI_1 RGCY 7 cut(s) 11, 37, 140, 201, 268, 308, 370
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 33, 270
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DrdI GACNNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 2 cut(s) 74, 404
FaiI YATR 3 cut(s) 72, 198, 402
FatI CATG 2 cut(s) 70, 400
Fnu4HI GCNGC 2 cut(s) 12, 141
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 12, 141
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 12, 141
HapII CCGG 1 cut(s) 338
Hin1II CATG 2 cut(s) 74, 404
HpaII CCGG 1 cut(s) 338
Hpy188I TCNGA 7 cut(s) 68, 245, 252, 259, 367, 426, 462
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 186, 335
HpyCH4V TGCA 4 cut(s) 85, 136, 440, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 305
HpyF3I CTNAG 2 cut(s) 33, 270
Hsp92II CATG 2 cut(s) 74, 404
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 5 cut(s) 51, 71, 249, 351, 437
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 123, 286
MaeI CTAG 1 cut(s) 54
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 5 cut(s) 71, 223, 298, 397, 439
MfeI CAATTG 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 5 cut(s) 19, 110, 174, 253, 435
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 4 cut(s) 40, 334, 338, 343
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 408, 469
MspI CCGG 1 cut(s) 338
MunI CAATTG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 34, 305
NdeII GATC 1 cut(s) 448
NlaIII CATG 2 cut(s) 74, 404
NlaIV GGNNCC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 13, 142
PspN4I GGNNCC 1 cut(s) 369
PstI CTGCAG 1 cut(s) 87
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 408, 469
SatI GCNGC 2 cut(s) 12, 141
Sau3AI GATC 1 cut(s) 448
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 96, 142, 197, 310, 423, 456
SfaNI GCATC 2 cut(s) 123, 286
SfcI CTRYAG 1 cut(s) 83
Sse9I AATT 5 cut(s) 19, 110, 174, 253, 435
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 54
TaqI TCGA 1 cut(s) 178
TasI AATT 5 cut(s) 19, 110, 174, 253, 435
TatI WGTACW 1 cut(s) 262
Tru1I TTAA 2 cut(s) 408, 469
Tru9I TTAA 2 cut(s) 408, 469
TscAI CASTG 1 cut(s) 447
TseI GCWGC 2 cut(s) 11, 140
TspDTI ATGAA 3 cut(s) 17, 87, 318
TspRI CASTG 1 cut(s) 447
XapI RAATTY 3 cut(s) 110, 174, 253
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.