pycom08g06320

CSC1-like protein RXW8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
4884025 .. 4887212
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06320.5

Sequence Viewer

Length: 1404 bp
ATGAATCTGGCAGCTCTTTTGACTTCTGCTGGTATTAATATAGCTGTGTGCGTGGTACTCTTTTTGCTATATTCTATATTGAGGAAACAACCGAGCAATGTGAACGTCTACTTTGGACGAATGCTTACGATATCCAAAAGAAGAAGTGATCTTTTCAATTTGGAAAGGTTTGTTCCTTCTGCTAGTTGGCTAGTGAAAGCATGGAGAACAAAAGAAGAAGATTTTTTGACAGTCGGTGGCTTGGATTCGGTTGTTTTTATCAGGATGCTTATTTTTAGTCTTCGAATCTTTTCTATTGCTGCTGTCATCTGCGTCTTTATAGTGCTTCCGGTGAATTATCATGGGCAAACGAAGGATCACCCGGGAATCCATGATGAATCCTTGGAAGTCTTTACCATCTTGAACGTTCATGAAGGTTCAAAGTGGCTTTGGACCCATTGTCTCGCATTGTACATTATCACTACTTCAGCTTGTATTCTCCTATACTTTGAATATAATCACGTCACTAGACTGAGGCTGGCATATATTATTGGATCTTCTTCAAATCCAAGTCATTTTACAATTGTTGTTCGTGCTATTCCATGGTCACCAGAAGGATCTTATAGTGATTCAGTAAGAAAATTCTTCACAAAATATCATGCATCAAGCTACTTGTCACACCAAATGGTGTATCGATCTGGTAAAGTTCAGAAACTGATGACCGATGCAGGGAAGATGTGCAAGATTCTTAAGGATGTTTCTGTGGAACAGAGTCATAGACCAGATCTATTTCATTGTGGTATGTCTGGAGGAGCTACTGATTCTTTTAAGATACTCACGAACGATTCAGAGAGTGTTAAAGGGAAGTCATCCCTTATCGACAATAGTTTGGGTGGAAGAAAAAAGGTGTGTGCTGCTGCTTTTGTCTTTTTCAAGACTCGCTGTGCTGCTCTTGTTACATCAAAGGTTCTTCATTCTTCAAATCCTATGCATTGGGTGACAGATATGGCTCCGGAACCAAATGATGTGTATTGGTCAAACCTTTGGATACCGTACGGACAACTGTGGATCCGGAAGTTAGCCACACTTCTGGCTACTATTGCCTTTATGCTTGTGTTTCTTATTCCTGTCACATTTGTTCAGGGCATGACTGCACTAAAAAGCCTGGAAAAAAAGTTTCCAGCTTTGAAAGGATTGCTCAAAAAGAACTATGTAAGCCAGGTGATAACGGGGTACCTGCCAAGTGTGGTTTTAATTGTGGCTTTTTACATCGTTCCACCTGTCATGATGCTGTTTTCAACAGTGGAGGGGTGGATCGATCTCGGAGTCAGAGGAAAAAGAGTGCATGCTTCAAAGTCTTATACTTCACAATCTGGAATGTCTTTTTTGTTAATGTTTTTACCGGCTCTGTTATCAGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

52.4

Weight (kDa)

9.58

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1224
Acc65I GGTACC 1 cut(s) 1212
AccB1I GGYRCC 1 cut(s) 1212
AccI GTMKAC 1 cut(s) 108
AccIII TCCGGA 2 cut(s) 991, 1050
AclI AACGTT 1 cut(s) 405
AclWI GGATC 6 cut(s) 363, 541, 604, 1042, 1055, 1301
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 4 cut(s) 57, 452, 1034, 1214
AfiI CCNNNNNNNGG 1 cut(s) 708
AflII CTTAAG 1 cut(s) 728
AhdI GACNNNNNGTC 1 cut(s) 438
AjiI CACGTC 1 cut(s) 502
AjnI CCWGG 2 cut(s) 1143, 1197
AluBI AGCT 6 cut(s) 14, 44, 470, 648, 794, 1163
AluI AGCT 6 cut(s) 14, 44, 470, 648, 794, 1163
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 6 cut(s) 363, 541, 604, 1042, 1055, 1301
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 2 cut(s) 991, 1050
ApeKI GCWGC 5 cut(s) 11, 299, 893, 896, 926
ApoI RAATTY 1 cut(s) 620
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 1212
AspS9I GGNCC 1 cut(s) 432
AsuC2I CCSGG 2 cut(s) 362, 363
AsuHPI GGTGA 5 cut(s) 343, 350, 579, 988, 1213
AsuII TTCGAA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 432
BamHI GGATCC 1 cut(s) 1047
BanI GGYRCC 1 cut(s) 1212
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 5 cut(s) 23, 286, 880, 883, 913
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 1145, 1199
BciVI GTATCC 1 cut(s) 1020
BcnI CCSGG 2 cut(s) 362, 363
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 3 cut(s) 183, 191, 507
BfrI CTTAAG 1 cut(s) 728
BfuAI ACCTGC 1 cut(s) 1224
BfuI GTATCC 1 cut(s) 1020
BglII AGATCT 1 cut(s) 763
BisI GCNGC 5 cut(s) 12, 300, 894, 897, 927
BlsI GCNGC 5 cut(s) 13, 301, 895, 898, 928
Bme1390I CCNGG 4 cut(s) 362, 363, 1145, 1199
Bme18I GGWCC 1 cut(s) 432
BmeRI GACNNNNNGTC 1 cut(s) 438
BmeT110I CYCGRG 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 5 cut(s) 434, 990, 996, 1049, 1214
BmrFI CCNGG 4 cut(s) 362, 363, 1145, 1199
BmsI GCATC 4 cut(s) 255, 650, 694, 1257
BpiI GAAGAC 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 807
Bpu14I TTCGAA 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 362, 363
Bsa29I ATCGAT 2 cut(s) 673, 1296
BsaJI CCNNGG 3 cut(s) 361, 381, 581
BsaWI WCCGGW 3 cut(s) 328, 991, 1050
Bsc4I CCNNNNNNNGG 1 cut(s) 708
Bse118I RCCGGY 1 cut(s) 1381
Bse3DI GCAATG 1 cut(s) 103
BseAI TCCGGA 2 cut(s) 991, 1050
BseBI CCWGG 2 cut(s) 1145, 1199
BseCI ATCGAT 2 cut(s) 673, 1296
BseDI CCNNGG 3 cut(s) 361, 381, 581
BseGI GGATG 3 cut(s) 270, 739, 848
BseLI CCNNNNNNNGG 1 cut(s) 708
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 503
BseRI GAGGAG 1 cut(s) 804
BseXI GCAGC 5 cut(s) 23, 286, 880, 883, 913
BsgI GTGCAG 1 cut(s) 1116
BshNI GGYRCC 1 cut(s) 1212
BshVI ATCGAT 2 cut(s) 673, 1296
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 5 cut(s) 329, 362, 992, 1051, 1382
BsiWI CGTACG 1 cut(s) 1032
BslI CCNNNNNNNGG 1 cut(s) 708
BsmAI GTCTC 1 cut(s) 446
BsmI GAATGC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 283
Bsp13I TCCGGA 2 cut(s) 991, 1050
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
Bsp19I CCATGG 1 cut(s) 581
BspCNI CTCAG 1 cut(s) 504
BspDI ATCGAT 2 cut(s) 673, 1296
BspEI TCCGGA 2 cut(s) 991, 1050
BspHI TCATGA 2 cut(s) 409, 1263
BspLI GGNNCC 5 cut(s) 434, 990, 996, 1049, 1214
BspMI ACCTGC 1 cut(s) 1224
BspPI GGATC 6 cut(s) 363, 541, 604, 1042, 1055, 1301
BspT104I TTCGAA 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 1212
BspTI CTTAAG 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 1381
BsrGI TGTACA 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 3 cut(s) 361, 381, 581
BssMI GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
BssT1I CCWWGG 2 cut(s) 381, 581
Bst2UI CCWGG 2 cut(s) 1145, 1199
Bst4CI ACNGT 4 cut(s) 232, 1032, 1044, 1282
BstAFI CTTAAG 1 cut(s) 728
BstAUI TGTACA 1 cut(s) 450
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 519, 1326
BstDEI CTNAG 1 cut(s) 512
BstDSI CCRYGG 1 cut(s) 581
BstEII GGTNACC 1 cut(s) 585
BstF5I GGATG 3 cut(s) 270, 739, 848
BstKTI GATC 9 cut(s) 151, 358, 536, 599, 677, 766, 1050, 1296, 1300
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
BstMWI GCNNNNNNNGC 1 cut(s) 1079
BstNI CCWGG 2 cut(s) 1145, 1199
BstNSI RCATGY 1 cut(s) 1328
BstPI GGTNACC 1 cut(s) 585
BstSCI CCNGG 4 cut(s) 360, 361, 1143, 1197
BstV1I GCAGC 5 cut(s) 23, 286, 880, 883, 913
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 4 cut(s) 533, 596, 763, 1047
BstXI CCANNNNNNTGG 1 cut(s) 1069
BstYI RGATCY 4 cut(s) 533, 596, 763, 1047
Bsu15I ATCGAT 2 cut(s) 673, 1296
BsuI GTATCC 1 cut(s) 1020
BsuTUI ATCGAT 2 cut(s) 673, 1296
BtgI CCRYGG 1 cut(s) 581
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 3 cut(s) 270, 739, 848
BtsIMutI CAGTG 1 cut(s) 1287
BveI ACCTGC 1 cut(s) 1224
Cac8I GCNNGC 2 cut(s) 519, 1326
CaiI CAGNNNCTG 1 cut(s) 694
CciI TCATGA 2 cut(s) 409, 1263
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 1 cut(s) 432
Cfr9I CCCGGG 1 cut(s) 361
ClaI ATCGAT 2 cut(s) 673, 1296
CseI GACGC 1 cut(s) 301
Csp6I GTAC 4 cut(s) 56, 451, 1033, 1213
CviAII CATG 9 cut(s) 201, 341, 371, 410, 582, 638, 1126, 1264, 1325
CviQI GTAC 4 cut(s) 56, 451, 1033, 1213
DdeI CTNAG 1 cut(s) 512
DpnI GATC 9 cut(s) 150, 357, 535, 598, 676, 765, 1049, 1295, 1299
DpnII GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
DriI GACNNNNNGTC 1 cut(s) 438
Eam1105I GACNNNNNGTC 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 381, 581
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 361
Eco91I GGTNACC 1 cut(s) 585
EcoO65I GGTNACC 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 1143, 1197
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 381, 581
EcoT22I ATGCAT 2 cut(s) 643, 972
ErhI CCWWGG 2 cut(s) 381, 581
FaeI CATG 9 cut(s) 204, 344, 374, 413, 585, 641, 1129, 1267, 1328
FatI CATG 9 cut(s) 200, 340, 370, 409, 581, 637, 1125, 1263, 1324
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 12, 300, 894, 897, 927
FokI GGATG 3 cut(s) 277, 746, 835
Fsp4HI GCNGC 5 cut(s) 12, 300, 894, 897, 927
FspBI CTAG 3 cut(s) 183, 191, 507
GluI GCNGC 5 cut(s) 12, 300, 894, 897, 927
GsuI CTGGAG 1 cut(s) 807
HapII CCGG 5 cut(s) 329, 362, 992, 1051, 1382
HgaI GACGC 1 cut(s) 301
Hin1II CATG 9 cut(s) 204, 344, 374, 413, 585, 641, 1129, 1267, 1328
HpaII CCGG 5 cut(s) 329, 362, 992, 1051, 1382
HphI GGTGA 5 cut(s) 343, 350, 579, 988, 1213
Hpy166II GTNNAC 2 cut(s) 103, 109
Hpy188I TCNGA 4 cut(s) 690, 829, 1304, 1310
Hpy8I GTNNAC 2 cut(s) 103, 109
HpyAV CCTTC 4 cut(s) 186, 346, 407, 587
HpyCH4III ACNGT 4 cut(s) 232, 1032, 1044, 1282
HpyCH4IV ACGT 3 cut(s) 105, 405, 501
HpyCH4V TGCA 6 cut(s) 641, 707, 720, 970, 1133, 1324
HpyF10VI GCNNNNNNNGC 1 cut(s) 1079
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 3 cut(s) 105, 405, 501
Hsp92II CATG 9 cut(s) 204, 344, 374, 413, 585, 641, 1129, 1267, 1328
Kpn2I TCCGGA 2 cut(s) 991, 1050
KpnI GGTACC 1 cut(s) 1216
Kzo9I GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
LmnI GCTCC 2 cut(s) 791, 994
Lsp1109I GCAGC 5 cut(s) 23, 286, 880, 883, 913
LweI GCATC 4 cut(s) 255, 650, 694, 1257
MaeI CTAG 3 cut(s) 183, 191, 507
MaeII ACGT 3 cut(s) 105, 405, 501
MaeIII GTNAC 6 cut(s) 502, 585, 654, 934, 976, 1108
MalI GATC 9 cut(s) 150, 357, 535, 598, 676, 765, 1049, 1295, 1299
MboI GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
MfeI CAATTG 2 cut(s) 561, 1399
MflI RGATCY 4 cut(s) 533, 596, 763, 1047
MluCI AATT 6 cut(s) 157, 334, 561, 620, 1233, 1399
MlyI GAGTC 3 cut(s) 760, 910, 1314
MnlI CCTC 5 cut(s) 75, 507, 782, 1279, 1304
Mph1103I ATGCAT 2 cut(s) 643, 972
MroI TCCGGA 2 cut(s) 991, 1050
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 6 cut(s) 36, 729, 807, 837, 1232, 1370
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 5 cut(s) 329, 362, 992, 1051, 1382
MspR9I CCNGG 4 cut(s) 362, 363, 1145, 1199
MunI CAATTG 2 cut(s) 561, 1399
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 2 cut(s) 1145, 1199
MwoI GCNNNNNNNGC 1 cut(s) 1079
NciI CCSGG 2 cut(s) 362, 363
NcoI CCATGG 1 cut(s) 581
NdeII GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
NlaIII CATG 9 cut(s) 204, 344, 374, 413, 585, 641, 1129, 1267, 1328
NlaIV GGNNCC 5 cut(s) 434, 990, 996, 1049, 1214
NmuCI GTSAC 5 cut(s) 502, 585, 654, 976, 1108
NsiI ATGCAT 2 cut(s) 643, 972
NspI RCATGY 1 cut(s) 1328
NspV TTCGAA 1 cut(s) 283
PaeI GCATGC 1 cut(s) 1328
PagI TCATGA 2 cut(s) 409, 1263
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 9 cut(s) 4, 245, 285, 366, 377, 608, 724, 800, 824
Pfl23II CGTACG 1 cut(s) 1032
PkrI GCNGC 5 cut(s) 13, 301, 895, 898, 928
PleI GAGTC 3 cut(s) 759, 910, 1313
PpsI GAGTC 3 cut(s) 759, 910, 1313
PshBI ATTAAT 1 cut(s) 36
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 1143, 1197
PspEI GGTNACC 1 cut(s) 585
PspGI CCWGG 2 cut(s) 1143, 1197
PspLI CGTACG 1 cut(s) 1032
PspN4I GGNNCC 5 cut(s) 434, 990, 996, 1049, 1214
PspPI GGNCC 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 4 cut(s) 533, 596, 763, 1047
RsaI GTAC 4 cut(s) 57, 452, 1034, 1214
RsaNI GTAC 4 cut(s) 56, 451, 1033, 1213
SaqAI TTAA 6 cut(s) 36, 729, 807, 837, 1232, 1370
SatI GCNGC 5 cut(s) 12, 300, 894, 897, 927
Sau3AI GATC 9 cut(s) 148, 355, 533, 596, 674, 763, 1047, 1293, 1297
Sau96I GGNCC 1 cut(s) 432
SchI GAGTC 3 cut(s) 760, 910, 1314
ScrFI CCNGG 4 cut(s) 362, 363, 1145, 1199
SfaNI GCATC 4 cut(s) 255, 650, 694, 1257
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 1 cut(s) 432
SmaI CCCGGG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SphI GCATGC 1 cut(s) 1328
Sse9I AATT 6 cut(s) 157, 334, 561, 620, 1233, 1399
SspMI CTAG 3 cut(s) 183, 191, 507
StyD4I CCNGG 4 cut(s) 360, 361, 1143, 1197
StyI CCWWGG 2 cut(s) 381, 581
TaaI ACNGT 4 cut(s) 232, 1032, 1044, 1282
TaiI ACGT 3 cut(s) 108, 408, 504
TaqI TCGA 4 cut(s) 283, 673, 858, 1296
TaqII GACCGA 1 cut(s) 716
TasI AATT 6 cut(s) 157, 334, 561, 620, 1233, 1399
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 9 cut(s) 4, 245, 285, 366, 377, 608, 724, 800, 824
Tru1I TTAA 6 cut(s) 36, 729, 807, 837, 1232, 1370
Tru9I TTAA 6 cut(s) 36, 729, 807, 837, 1232, 1370
TscAI CASTG 1 cut(s) 1287
TseFI GTSAC 5 cut(s) 502, 585, 654, 976, 1108
TseI GCWGC 5 cut(s) 11, 299, 893, 896, 926
Tsp45I GTSAC 5 cut(s) 502, 585, 654, 976, 1108
TspDTI ATGAA 6 cut(s) 17, 390, 398, 426, 761, 941
TspGWI ACGGA 1 cut(s) 1050
TspMI CCCGGG 1 cut(s) 361
TspRI CASTG 1 cut(s) 1287
Vha464I CTTAAG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 432
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 1328
XmaI CCCGGG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 3 cut(s) 183, 191, 507
Zsp2I ATGCAT 2 cut(s) 643, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.