pycom08g07010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0018802
Physical Location & Seq
Forward (+)
5607518 .. 5608395
878 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07010.1

Sequence Viewer

Length: 759 bp
ATGGGGCAAGTGCCCTTCCGTCTCCAGAATCACCACCGTGTTCCGACCGCCCAGGTGGTCCCTCAGGTAGTTAGCCACCGACGCCGGCACGGACACGTCCCTCGCCGTCTGGATTATCCAGCACGGTACTCGGACCAGCCCCAAAACACCCCTCAGATCGCTGTTGAACACGGTCCGAGAGACGAAAAGCGAGATGTCGGGTCGCATGTTGAACAGGGTGCGGCTGAATTCTCGGACCGCTGTCGGGACGTCGGCCCCAACTGCCAGCGGCGCGAAGCCGTTGACCCATGCCTCGTAATTGGCCTCCATTGCCGAAAAGACCTTCTCAATCTCCTCCTGCTCGAATCCTCCATGGTAATCTCTTTCGTTGATCTTTACCTCGGGGAAGCGCCGATGAGTACGAGCTTGGAGAAGAGTTCGGGGCGGCGGATGGAGGCTAGGATGCTCGATCATCGCAGAGACGGAGTGGCCAACATAGGCGCAGCGGTTGACGCCGAGGGCATCGAGAATGTTGAGGAGGTCGTCGACGTAGGCGTCGAGGGTGGTGTAGCGGCGGAAGTCGAAGTAGTCCGGGTTGACGCTGCCGGCGCAGACGAGGTCGTAAAGAATGACGCGGTAGTATGGCGTGAAGTACTGGAGAATGAGCTGCCAGGCCGACTGGTCGGTGCCGGAGCCGTGGGCGAAGACGACGTACTTGTCGCCGGAGCCAACGACCCGGACGTTGAGAGCGTCGAGGATGGTGGTGCCGACCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.39

Weight (kDa)

4.9

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018802)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g27710
pyrus_communis pycom08g07010
rosa_chinensis RchiOBHm_Chr7g0203781
rosa_laevigata RLG00000030041 RLG00000030745
rosa_multiflora Rmu_sc0000795.1_g000055 Rmu_sc0001802.1_g000007 Rmu_sc0002194.1_g000020
rosa_samantha Rh7BG294500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 533, 695
AatII GACGTC 1 cut(s) 252
AccB1I GGYRCC 2 cut(s) 665, 743
AccI GTMKAC 1 cut(s) 525
AccII CGCG 2 cut(s) 273, 614
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 1 cut(s) 227
AcyI GRCGYC 4 cut(s) 82, 249, 492, 534
AfaI GTAC 4 cut(s) 128, 400, 633, 693
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 167, 212
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 2 cut(s) 51, 649
AleI CACNNNNGTG 1 cut(s) 36
AluBI AGCT 2 cut(s) 405, 646
AluI AGCT 2 cut(s) 405, 646
Alw26I GTCTC 3 cut(s) 26, 174, 453
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 4 cut(s) 253, 301, 468, 652
ApeKI GCWGC 3 cut(s) 482, 581, 646
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 4 cut(s) 273, 391, 482, 590
AspS9I GGNCC 5 cut(s) 58, 133, 173, 235, 254
AsuC2I CCSGG 2 cut(s) 572, 716
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 4 cut(s) 58, 133, 173, 235
AxyI CCTNAGG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 15
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 2 cut(s) 665, 743
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
BbsI GAAGAC 1 cut(s) 690
BbvI GCAGC 3 cut(s) 494, 568, 633
BccI CCATC 2 cut(s) 424, 731
BceAI ACGGC 3 cut(s) 90, 263, 659
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 2 cut(s) 53, 651
BcnI CCSGG 2 cut(s) 572, 716
BcoDI GTCTC 3 cut(s) 26, 174, 453
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 7 cut(s) 222, 269, 425, 483, 552, 582, 647
BlsI GCNGC 7 cut(s) 223, 270, 426, 484, 553, 583, 648
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 4 cut(s) 53, 572, 651, 716
Bme18I GGWCC 4 cut(s) 58, 133, 173, 235
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 5 cut(s) 58, 133, 173, 235, 254
BmiI GGNNCC 6 cut(s) 60, 256, 667, 673, 706, 745
BmrFI CCNGG 4 cut(s) 53, 572, 651, 716
BmsI GCATC 2 cut(s) 432, 510
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 2 cut(s) 8, 656
BpuMI CCSGG 2 cut(s) 572, 716
BsaHI GRCGYC 4 cut(s) 82, 249, 492, 534
BsaJI CCNNGG 5 cut(s) 51, 351, 379, 495, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 2 cut(s) 84, 584
Bse1I ACTGG 2 cut(s) 639, 663
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 53, 651
BseDI CCNNGG 5 cut(s) 51, 351, 379, 495, 675
BseGI GGATG 3 cut(s) 435, 447, 742
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 77, 167
BseNI ACTGG 2 cut(s) 639, 663
BseRI GAGGAG 2 cut(s) 323, 530
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 3 cut(s) 494, 568, 633
Bsh1236I CGCG 2 cut(s) 273, 614
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 255, 303, 470, 654
BshNI GGYRCC 2 cut(s) 665, 743
BsiEI CGRYCG 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 6 cut(s) 85, 571, 585, 669, 702, 716
BslFI GGGAC 3 cut(s) 44, 83, 260
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 26, 174, 453
BsmBI CGTCTC 3 cut(s) 26, 174, 453
BsmFI GGGAC 3 cut(s) 44, 83, 260
BsnI GGCC 4 cut(s) 255, 303, 470, 654
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 3 cut(s) 156, 370, 448
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 4 cut(s) 255, 303, 470, 654
BspCNI CTCAG 2 cut(s) 76, 166
BspFNI CGCG 2 cut(s) 273, 614
BspLI GGNNCC 6 cut(s) 60, 256, 667, 673, 706, 745
BspT107I GGYRCC 2 cut(s) 665, 743
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 2 cut(s) 84, 584
BsrI ACTGG 2 cut(s) 639, 663
BssAI RCCGGY 2 cut(s) 84, 584
BssECI CCNNGG 5 cut(s) 51, 351, 379, 495, 675
BssMI GATC 3 cut(s) 156, 370, 448
BssNI GRCGYC 4 cut(s) 82, 249, 492, 534
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 53, 651
Bst4CI ACNGT 3 cut(s) 38, 126, 173
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 4 cut(s) 82, 249, 492, 534
BstC8I GCNNGC 3 cut(s) 86, 266, 586
BstDEI CTNAG 2 cut(s) 63, 153
BstDSI CCRYGG 2 cut(s) 351, 675
BstF5I GGATG 3 cut(s) 435, 447, 742
BstFNI CGCG 2 cut(s) 273, 614
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 4 cut(s) 273, 391, 482, 590
BstKTI GATC 3 cut(s) 159, 373, 451
BstMAI GTCTC 3 cut(s) 26, 174, 453
BstMBI GATC 3 cut(s) 156, 370, 448
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 6 cut(s) 81, 261, 270, 309, 491, 587
BstNI CCWGG 2 cut(s) 53, 651
BstNSI RCATGY 1 cut(s) 209
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 51, 570, 649, 714
BstSLI GKGCMC 1 cut(s) 15
BstUI CGCG 2 cut(s) 273, 614
BstV1I GCAGC 3 cut(s) 494, 568, 633
BstV2I GAAGAC 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 4 cut(s) 255, 303, 470, 654
BtgI CCRYGG 2 cut(s) 351, 675
BtgZI GCGATG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 435, 447, 742
Cac8I GCNNGC 3 cut(s) 86, 266, 586
CfoI GCGC 4 cut(s) 273, 391, 482, 590
Cfr10I RCCGGY 2 cut(s) 84, 584
Cfr13I GGNCC 5 cut(s) 58, 133, 173, 235, 254
CpoI CGGWCCG 2 cut(s) 173, 235
CseI GACGC 6 cut(s) 90, 500, 523, 587, 620, 718
Csp6I GTAC 4 cut(s) 127, 399, 632, 692
CspI CGGWCCG 2 cut(s) 173, 235
CviAII CATG 4 cut(s) 206, 288, 352, 752
CviQI GTAC 4 cut(s) 127, 399, 632, 692
DdeI CTNAG 2 cut(s) 63, 153
DpnI GATC 3 cut(s) 158, 372, 450
DpnII GATC 3 cut(s) 156, 370, 448
DrdI GACNNNNNNGTC 2 cut(s) 533, 695
DseDI GACNNNNNNGTC 2 cut(s) 533, 695
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EciI GGCGGA 2 cut(s) 442, 569
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 4 cut(s) 58, 133, 173, 235
Eco81I CCTNAGG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 51, 649
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 3 cut(s) 26, 174, 453
FaeI CATG 4 cut(s) 209, 291, 355, 755
FaiI YATR 6 cut(s) 207, 289, 353, 476, 622, 753
FaqI GGGAC 3 cut(s) 44, 83, 260
FatI CATG 4 cut(s) 205, 287, 351, 751
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 7 cut(s) 222, 269, 425, 483, 552, 582, 647
FokI GGATG 3 cut(s) 442, 454, 749
Fsp4HI GCNGC 7 cut(s) 222, 269, 425, 483, 552, 582, 647
FspBI CTAG 1 cut(s) 438
GlaI GCGC 4 cut(s) 272, 390, 481, 589
GluI GCNGC 7 cut(s) 222, 269, 425, 483, 552, 582, 647
GsuI CTGGAG 2 cut(s) 8, 656
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 255, 303, 470, 654
HapII CCGG 6 cut(s) 85, 571, 585, 669, 702, 716
HgaI GACGC 6 cut(s) 90, 500, 523, 587, 620, 718
HhaI GCGC 4 cut(s) 273, 391, 482, 590
Hin1I GRCGYC 4 cut(s) 82, 249, 492, 534
Hin1II CATG 4 cut(s) 209, 291, 355, 755
Hin6I GCGC 4 cut(s) 271, 389, 480, 588
HinP1I GCGC 4 cut(s) 271, 389, 480, 588
HincII GTYRAC 4 cut(s) 283, 490, 526, 577
HindII GTYRAC 4 cut(s) 283, 490, 526, 577
HinfI GANTC 2 cut(s) 28, 344
HpaII CCGG 6 cut(s) 85, 571, 585, 669, 702, 716
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 4 cut(s) 283, 490, 526, 577
Hpy188I TCNGA 5 cut(s) 45, 133, 156, 177, 235
Hpy188III TCNNGA 4 cut(s) 25, 110, 245, 505
Hpy8I GTNNAC 4 cut(s) 283, 490, 526, 577
Hpy99I CGWCG 7 cut(s) 84, 254, 527, 530, 539, 692, 734
HpyAV CCTTC 2 cut(s) 25, 332
HpyCH4III ACNGT 3 cut(s) 38, 126, 173
HpyCH4IV ACGT 5 cut(s) 96, 249, 528, 690, 720
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 261, 270, 309, 491, 587
HpyF3I CTNAG 2 cut(s) 63, 153
HpySE526I ACGT 5 cut(s) 96, 249, 528, 690, 720
Hsp92I GRCGYC 4 cut(s) 82, 249, 492, 534
Hsp92II CATG 4 cut(s) 209, 291, 355, 755
HspAI GCGC 4 cut(s) 271, 389, 480, 588
KroI GCCGGC 2 cut(s) 84, 584
KroNI GCCGGC 2 cut(s) 86, 586
Kzo9I GATC 3 cut(s) 156, 370, 448
LmnI GCTCC 2 cut(s) 671, 704
Lsp1109I GCAGC 3 cut(s) 494, 568, 633
LweI GCATC 2 cut(s) 432, 510
MaeI CTAG 1 cut(s) 438
MaeII ACGT 5 cut(s) 96, 249, 528, 690, 720
MalI GATC 3 cut(s) 158, 372, 450
MboI GATC 3 cut(s) 156, 370, 448
MboII GAAGA 2 cut(s) 424, 695
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 2 cut(s) 227, 297
MluNI TGGCCA 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 68
Mox20I TGGCCA 1 cut(s) 470
MroNI GCCGGC 2 cut(s) 84, 584
MscI TGGCCA 1 cut(s) 470
MslI CAYNNNNRTG 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 3 cut(s) 240, 268, 485
MspI CCGG 6 cut(s) 85, 571, 585, 669, 702, 716
MspR9I CCNGG 4 cut(s) 53, 572, 651, 716
MvaI CCWGG 2 cut(s) 53, 651
MvnI CGCG 2 cut(s) 273, 614
MwoI GCNNNNNNNGC 6 cut(s) 81, 261, 270, 309, 491, 587
NaeI GCCGGC 2 cut(s) 86, 586
NciI CCSGG 2 cut(s) 572, 716
NcoI CCATGG 1 cut(s) 351
NdeII GATC 3 cut(s) 156, 370, 448
NgoMIV GCCGGC 2 cut(s) 84, 584
NlaIII CATG 4 cut(s) 209, 291, 355, 755
NlaIV GGNNCC 6 cut(s) 60, 256, 667, 673, 706, 745
NmeAIII GCCGAG 1 cut(s) 520
NspI RCATGY 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 36
PcsI WCGNNNNNNNCGW 4 cut(s) 531, 534, 717, 726
PdiI GCCGGC 2 cut(s) 86, 586
PfeI GAWTC 2 cut(s) 28, 344
PflFI GACNNNGTC 1 cut(s) 596
PkrI GCNGC 7 cut(s) 223, 270, 426, 484, 553, 583, 648
PshAI GACNNNNGTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 51, 649
PspGI CCWGG 2 cut(s) 51, 649
PspN4I GGNNCC 6 cut(s) 60, 256, 667, 673, 706, 745
PspPI GGNCC 5 cut(s) 58, 133, 173, 235, 254
PsyI GACNNNGTC 1 cut(s) 596
RsaI GTAC 4 cut(s) 128, 400, 633, 693
RsaNI GTAC 4 cut(s) 127, 399, 632, 692
RseI CAYNNNNRTG 1 cut(s) 36
Rsr2I CGGWCCG 2 cut(s) 173, 235
RsrII CGGWCCG 2 cut(s) 173, 235
SalI GTCGAC 1 cut(s) 524
SatI GCNGC 7 cut(s) 222, 269, 425, 483, 552, 582, 647
Sau3AI GATC 3 cut(s) 156, 370, 448
Sau96I GGNCC 5 cut(s) 58, 133, 173, 235, 254
ScaI AGTACT 1 cut(s) 633
ScrFI CCNGG 4 cut(s) 53, 572, 651, 716
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 2 cut(s) 432, 510
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 4 cut(s) 58, 133, 173, 235
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 2 cut(s) 227, 297
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 4 cut(s) 51, 570, 649, 714
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 3 cut(s) 38, 126, 173
TaiI ACGT 5 cut(s) 99, 252, 531, 693, 723
TaqI TCGA 7 cut(s) 342, 447, 504, 525, 537, 561, 732
TasI AATT 2 cut(s) 227, 297
TatI WGTACW 1 cut(s) 631
TauI GCSGC 4 cut(s) 224, 271, 427, 554
TfiI GAWTC 2 cut(s) 28, 344
TseI GCWGC 3 cut(s) 482, 581, 646
TspGWI ACGGA 3 cut(s) 8, 105, 477
Tth111I GACNNNGTC 1 cut(s) 596
VpaK11BI GGWCC 4 cut(s) 58, 133, 173, 235
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 1 cut(s) 438
ZraI GACGTC 1 cut(s) 250
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.