Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001802.1

Orthogroup ID

OG0018802

Physical Location & Seq

Genomic Coordinates Reverse (-)

39554 .. 41081

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001802.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgaggctgaattggggtgagtcgatttggtgggttgagtcgatttggtggagttgggtgactcaaagccttaaacaatcaaactcatctctcgattcaaaacccaaaaactcatctcaaattcccgagggtgggtcggtgattggtgggtggttcggtgacaattgcggcgacggagggacaggatttgatcttgtttttggggagctgggttttgatattgcaggacaagatttgatcttgtttttgggcgtggtggtgttgctgccgccgccattggaggaggaggagagagtggatgctgaagtggtacttaatggttatttggccccagagtatgctctctatggacagcttatggagaagagtgatatttacagattcggcattgtgattcttgagatcatgagcgggagaaaagagaatcttgatgagtcattgagggaggaaggaccaaaggctgtgatggagaggcttgtaaatgttgggattcttagtgctcatgttatggtggcttttaggcctaccatttcagaagcgctgaggatgttggaggatgacattaatgttcaaaattaccagattggccaattccacttgggaatgagtcttatagatcttcttttgggtttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

211

Amino Acids

23.54

Weight (kDa)

4.33

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018802)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27710
pyrus_communis	pycom08g07010
rosa_chinensis	RchiOBHm_Chr7g0203781
rosa_laevigata	RLG00000030041 RLG00000030745
rosa_multiflora	Rmu_sc0000795.1_g000055 Rmu_sc0001802.1_g000007 Rmu_sc0002194.1_g000020
rosa_samantha	Rh7BG294500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	411
AciI	CCGC	4 cut(s)	168, 269, 272, 411
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	312
AfeI	AGCGCT	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	131, 132
AgsI	TTSAA	2 cut(s)	99, 572
AluBI	AGCT	2 cut(s)	208, 355
AluI	AGCT	2 cut(s)	208, 355
Alw21I	GWGCWC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	540
AoxI	GGCC	3 cut(s)	327, 521, 586
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	120
AseI	ATTAAT	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	328, 452
AsuHPI	GGTGA	4 cut(s)	29, 70, 151, 170
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	502
BbvCI	CCTCAGC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	634
BfoI	RGCGCY	1 cut(s)	542
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	4 cut(s)	169, 266, 269, 272
BlsI	GCNGC	4 cut(s)	170, 267, 270, 273
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	328, 452
BmiI	GGNNCC	1 cut(s)	330
BmsI	GCATC	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 132
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	3 cut(s)	304, 552, 562
BseLI	CCNNNNNNNGG	2 cut(s)	131, 132
BseMII	CTCAG	1 cut(s)	533
BseRI	GAGGAG	3 cut(s)	296, 299, 302
BseXI	GCAGC	1 cut(s)	252
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	3 cut(s)	329, 523, 588
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	131, 132
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	329, 523, 588
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	190, 237, 402, 616
BspACI	CCGC	4 cut(s)	168, 269, 272, 411
BspANI	GGCC	3 cut(s)	329, 523, 588
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	330
BsrBI	CCGCTC	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	4 cut(s)	190, 237, 402, 616
Bst6I	CTCTTC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	494, 542
BstF5I	GGATG	3 cut(s)	304, 552, 562
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	4 cut(s)	193, 240, 405, 619
BstMBI	GATC	4 cut(s)	190, 237, 402, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	329, 523, 588
BtsCI	GGATG	3 cut(s)	304, 552, 562
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	328, 452
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	406, 503
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	494, 542
DpnI	GATC	4 cut(s)	192, 239, 404, 618
DpnII	GATC	4 cut(s)	190, 237, 402, 616
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	452
Eco47III	AGCGCT	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	125
FaeI	CATG	2 cut(s)	409, 506
FaiI	YATR	7 cut(s)	339, 348, 359, 407, 504, 509, 614
FalI	AAGNNNNNCTT	4 cut(s)	297, 329, 411, 443
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	405, 502
FauI	CCCGC	1 cut(s)	404
Fnu4HI	GCNGC	4 cut(s)	169, 266, 269, 272
FokI	GGATG	3 cut(s)	311, 559, 569
Fsp4HI	GCNGC	4 cut(s)	169, 266, 269, 272
FspBI	CTAG	1 cut(s)	634
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	4 cut(s)	169, 266, 269, 272
GsaI	CCCAGC	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	329, 523, 588
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	2 cut(s)	409, 506
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HphI	GGTGA	4 cut(s)	29, 70, 151, 170
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	5 cut(s)	92, 125, 398, 406, 428
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	443
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	494, 542
Hsp92II	CATG	2 cut(s)	409, 506
HspAI	GCGC	1 cut(s)	539
Kzo9I	GATC	4 cut(s)	190, 237, 402, 616
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	168, 194, 210, 345, 593
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	58, 158
MalI	GATC	4 cut(s)	192, 239, 404, 618
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	4 cut(s)	190, 237, 402, 616
MboII	GAAGA	2 cut(s)	376, 611
MfeI	CAATTG	1 cut(s)	163
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	5 cut(s)	10, 120, 163, 574, 590
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	5 cut(s)	29, 47, 55, 443, 616
MmeI	TCCRAC	1 cut(s)	531
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	3 cut(s)	72, 315, 564
Msp20I	TGGCCA	1 cut(s)	588
MunI	CAATTG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	4 cut(s)	190, 237, 402, 616
NlaIII	CATG	2 cut(s)	409, 506
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	58, 158
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	523
PfeI	GAWTC	5 cut(s)	95, 381, 394, 424, 490
PkrI	GCNGC	4 cut(s)	170, 267, 270, 273
PleI	GAGTC	5 cut(s)	28, 46, 55, 442, 615
PpsI	GAGTC	5 cut(s)	28, 46, 55, 442, 615
PshBI	ATTAAT	1 cut(s)	564
PspFI	CCCAGC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	328, 452
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	72, 315, 564
SatI	GCNGC	4 cut(s)	169, 266, 269, 272
Sau3AI	GATC	4 cut(s)	190, 237, 402, 616
Sau96I	GGNCC	2 cut(s)	328, 452
SchI	GAGTC	5 cut(s)	29, 47, 55, 443, 616
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	2 cut(s)	210, 357
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	10, 120, 163, 574, 590
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	4 cut(s)	168, 269, 272, 411
SspMI	CTAG	1 cut(s)	634
StuI	AGGCCT	1 cut(s)	523
TaqI	TCGA	3 cut(s)	23, 41, 93
TasI	AATT	5 cut(s)	10, 120, 163, 574, 590
TauI	GCSGC	3 cut(s)	171, 271, 274
TfiI	GAWTC	5 cut(s)	95, 381, 394, 424, 490
Tru1I	TTAA	3 cut(s)	72, 315, 564
Tru9I	TTAA	3 cut(s)	72, 315, 564
TseFI	GTSAC	2 cut(s)	58, 158
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	58, 158
TspGWI	ACGGA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	1 cut(s)	120
XspI	CTAG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.