RLG00000030745

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018802
Physical Location & Seq
Reverse (-)
66835512 .. 66836048
537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030745

Sequence Viewer

Length: 450 bp
ATGAGGCTGAATTGGGGTGAGTCGATTTGGTGGGTTGAGTCGATTTGGTGGGTTGAGTCGATTTGGTGGAGTTGGGTGACTCAAAGCCTCAAACAATCAAACTCATCTCTAGATTCAAAACCCAGAAACTCAACTCAAATTCCCGAGGGTGGGTCGGTGACAATTGCGGCGACGGAGGGACAAGCTTTGATCTTGTTTTTGGGGAGCTGGGTTTTGCGCGGACTGGTCAGTGCCGACATAAGCGCACTTTTTGACTCCCACAGCATCGAGAATGTTGAGCAAGTCGTCGACGAAGGCGTCCAGGTTGGTGTAGCGGTTGAAATCGAAGTAATCGGGGTTGACGCTTCCGGCGCAAACGAGGACCAGGTACTACTCGCCCGACCCGGTTACCCAGACATTCAGAGCTTCCAAGATTCTGGTGTTGCTGGGCATGTTTGTAGAGGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.3

Weight (kDa)

4.34

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018802)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g27710
pyrus_communis pycom08g07010
rosa_chinensis RchiOBHm_Chr7g0203781
rosa_laevigata RLG00000030041 RLG00000030745
rosa_multiflora Rmu_sc0000795.1_g000055 Rmu_sc0001802.1_g000007 Rmu_sc0002194.1_g000020
rosa_samantha Rh7BG294500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 219
AciI CCGC 3 cut(s) 167, 219, 314
AcsI RAATTY 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 149, 150
AgsI TTSAA 2 cut(s) 117, 320
AjnI CCWGG 2 cut(s) 300, 363
AluBI AGCT 3 cut(s) 185, 207, 405
AluI AGCT 3 cut(s) 185, 207, 405
Ama87I CYCGRG 1 cut(s) 143
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 3 cut(s) 219, 245, 353
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 29, 88, 169
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 302, 365
BcnI CCSGG 1 cut(s) 384
BfaI CTAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 3 cut(s) 302, 365, 384
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 361
BmrFI CCNGG 3 cut(s) 302, 365, 384
BmsI GCATC 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 150
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 302, 365
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 149, 150
BseNI ACTGG 1 cut(s) 228
BseYI CCCAGC 2 cut(s) 207, 425
Bsh1236I CGCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 348, 384
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 149, 150
BsmFI GGGAC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 3 cut(s) 167, 219, 314
BspFNI CGCG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 302, 365
BstACI GRCGYC 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 386
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 3 cut(s) 219, 245, 353
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 2 cut(s) 302, 365
BstNSI RCATGY 1 cut(s) 434
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 300, 363, 382
BstUI CGCG 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 235
CfoI GCGC 3 cut(s) 219, 245, 353
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 2 cut(s) 286, 350
CsiI ACCWGGT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 368
CviAII CATG 1 cut(s) 431
CviJI RGCY 5 cut(s) 7, 87, 185, 207, 405
CviKI_1 RGCY 5 cut(s) 7, 87, 185, 207, 405
CviQI GTAC 1 cut(s) 368
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 300, 363
FaeI CATG 1 cut(s) 434
FaiI YATR 2 cut(s) 239, 432
FaqI GGGAC 1 cut(s) 192
FatI CATG 1 cut(s) 430
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 110
GlaI GCGC 3 cut(s) 218, 244, 352
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 2 cut(s) 211, 429
HapII CCGG 2 cut(s) 348, 384
HgaI GACGC 2 cut(s) 286, 350
HhaI GCGC 3 cut(s) 219, 245, 353
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 3 cut(s) 217, 243, 351
HinP1I GCGC 3 cut(s) 217, 243, 351
HincII GTYRAC 2 cut(s) 289, 340
HindII GTYRAC 2 cut(s) 289, 340
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 7 cut(s) 20, 38, 56, 79, 113, 254, 413
HpaII CCGG 2 cut(s) 348, 384
HphI GGTGA 3 cut(s) 29, 88, 169
Hpy166II GTNNAC 2 cut(s) 289, 340
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 3 cut(s) 110, 143, 268
Hpy8I GTNNAC 2 cut(s) 289, 340
Hpy99I CGWCG 3 cut(s) 175, 290, 293
HpyAV CCTTC 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 3 cut(s) 217, 243, 351
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 204
LweI GCATC 1 cut(s) 273
MabI ACCWGGT 1 cut(s) 363
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 3 cut(s) 76, 157, 386
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MfeI CAATTG 1 cut(s) 162
MluCI AATT 3 cut(s) 10, 138, 162
MlyI GAGTC 5 cut(s) 29, 47, 65, 73, 248
MnlI CCTC 6 cut(s) 98, 139, 169, 352, 434, 438
MspI CCGG 2 cut(s) 348, 384
MspR9I CCNGG 3 cut(s) 302, 365, 384
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 2 cut(s) 302, 365
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 350
NciI CCSGG 1 cut(s) 384
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 434
NmuCI GTSAC 2 cut(s) 76, 157
NspI RCATGY 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 2 cut(s) 113, 413
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 5 cut(s) 28, 46, 64, 73, 248
PpsI GAGTC 5 cut(s) 28, 46, 64, 73, 248
Psp6I CCWGG 2 cut(s) 300, 363
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 2 cut(s) 207, 425
PspGI CCWGG 2 cut(s) 300, 363
PspPI GGNCC 1 cut(s) 361
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SalI GTCGAC 1 cut(s) 287
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 5 cut(s) 29, 47, 65, 73, 248
ScrFI CCNGG 3 cut(s) 302, 365, 384
SetI ASST 6 cut(s) 187, 209, 306, 369, 407, 449
SexAI ACCWGGT 1 cut(s) 363
SfaNI GCATC 1 cut(s) 273
SgrDI CGTCGACG 1 cut(s) 287
SinI GGWCC 1 cut(s) 361
Sse9I AATT 3 cut(s) 10, 138, 162
SsiI CCGC 3 cut(s) 167, 219, 314
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 300, 363, 382
TaqI TCGA 6 cut(s) 23, 41, 59, 267, 288, 324
TasI AATT 3 cut(s) 10, 138, 162
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 113, 413
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 76, 157
Tsp45I GTSAC 2 cut(s) 76, 157
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 138
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.