Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005367

Physical Location & Seq

Genomic Coordinates Reverse (-)

7044642 .. 7048239

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGGGTCGGATATGCAGTCTGTTGGTTTTCTAGATACTTTAAAAATGGAGAGGGTTAGGACAATTTTAACCCATACATATCCTTATCCGCATGAACATTCCCGTCATGCCGTAATTGCTGTTGTTGTGGGCTGCCTCTTTTTTATCTCTTCTGACAACATCAACACCCTTATAGAAAAGTTAGACAACAATATTAAGTGGTGGTCTATGTATGCATGCTTGTTCGGTTTCTTCTATTTCTTTTCGTCCCCATTTATAGGGAAGACTATCAAACCGAGTTATTCAAATTTCAGTCGGTGGTATATAGTCTGGATTTTAGTGGCGGCTGTCTATCATCTTCCTAGTTTTCAATCAATGGGAGTTGATATGAGGATGAATCTGTCTTTGGGTTTTAATGTATTTGTCACTTCTGTTCTGTTTCTTCTTTTCTTCCACATTATATTCATTGGCCTTTGGTACATTGGTCTCGTGTCACGTGTTGCTGGAAGGAGGCCAGCAATTTTGACCATTCTTCAAAATTGTGCTGTTCTTAGTGTAGCCTGCTGTGTGTTTTATAGTCATTGTGGCAACCGTGCTATTCTTAGAGATAGACAACTGGTACGAAGAAACTCTTGGTTTAATTTTTGGAAGAAAGATGAGAGGAACACATGGCTTTCAAAATTCCTCCGAATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGGTCTGCAAGTGATTATCCACTTTTGTCCAAATGGGTCATTTATGGTGAGTTAGCATGCAATGGTGCTTGTGCTGGTCCATCTGATGAAATCTCCCCATTGTATTCATTATGGGCCACATTCATAGGCCTCTACATTGCTAATTATGTAGTGGAGAGATCAACAGGGTGGGCTCTTACTCACCCTCTGTCTGTTGAAGAACATCAGAAGTCAAAGGAGAAGCAAATGAAGCCACATTTTTTGGATATGGTTCCTTGGTATTCGGGAACATCAGCTGATTTATTCAAGACTGTCTTTGACCTCTTGGTATCAGTAACTGTCTTTGTTGGCCGCTTTGACATGCGTATGATGCAGGCAGCAATGGACAAGGTCCATGATGGAGCTGAACAAAAGGATCTTTTATATGATAACTTTGTTGAGAAGGATGATCTATGGTTTGACTTCATGGCTGATACAGGCGATGGTGGAAACTCCTCTTATTCCGTGGCTCGGCTTCTTGCACAACCTTCCATTAATATTAACAGAGATGGTTCCATGCTGAAGTTACCACGTGGAGACTTGCTACTTATTGGAGGGGATCTTGCGTATCCTAATCCATCAGCGTTCACCTATGAAAGGCGCCTTTTTTGTCCTTTTGAGTATGCTCTCCAGCCTCCTCCATGGTCTAAACAAGAGCATATAGCTGTAGATAAGCCTGAACTACCTCGTGGTGTGTCTGAGCTGAAGAACTATGATGGACCTCAGTGTTTTGTCATTCCTGGAAACCATGATTGGTTTGATGGACTTCATACATTCATGAGGTATATATGCCATAAGAGCTGGTTGGGTGGGTGGTTTATGCCTCAAAAGAAGAGTTATTTCGCTCTGCAACTCCCTAAAAGATGGTGGGTATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

539

Amino Acids

62.03

Weight (kDa)

8.33

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11800 AT4G23000 AT4G23000
fragaria_vesca	FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860 FvH4_2g34860
malus_domestica	MD00G1187500.v1.1 MD08G1106200.v1.1 MD15G1086800.v1.1
prunus_persica	Prupe.1G440500_v2.0.a1 Prupe.1G440500_v2.0.a1
pyrus_communis	pycom08g08730 pycom15g08170
rosa_chinensis	RchiOBHm_Chr6g0307181
rosa_laevigata	RLG00000010729
rosa_multiflora	Rmu_sc0000031.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161100
rosa_rugosa	Rorug06G0357300 Rorug06G0357400 Rorug06G0357500
rosa_samantha	Rh6AG468100 Rh6BG432400 Rh6CG483300 Rh6DG469800
rosa_wichuraiana	Rw6G040790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1335
AciI	CCGC	3 cut(s)	89, 323, 1048
AclWI	GGATC	2 cut(s)	1119, 1302
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	2 cut(s)	286, 659
AcuI	CTGAAG	2 cut(s)	1277, 1460
AcvI	CACGTG	2 cut(s)	476, 1268
AcyI	GRCGYC	1 cut(s)	1336
AfaI	GTAC	2 cut(s)	458, 600
AfiI	CCNNNNNNNGG	3 cut(s)	257, 1206, 1332
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	7 cut(s)	285, 350, 515, 657, 682, 914, 1003
AjnI	CCWGG	1 cut(s)	1474
AjuI	GAANNNNNNNTTGG	6 cut(s)	368, 400, 595, 627, 1471, 1503
AluBI	AGCT	5 cut(s)	992, 1100, 1400, 1438, 1536
AluI	AGCT	5 cut(s)	992, 1100, 1400, 1438, 1536
Alw26I	GTCTC	2 cut(s)	470, 1266
AlwI	GGATC	2 cut(s)	1119, 1302
AlwNI	CAGNNNCTG	1 cut(s)	1034
AoxI	GGCC	5 cut(s)	448, 491, 831, 844, 1045
ApeKI	GCWGC	2 cut(s)	132, 1073
ApoI	RAATTY	2 cut(s)	286, 659
AseI	ATTAAT	1 cut(s)	1230
AspLEI	GCGC	1 cut(s)	1338
AspS9I	GGNCC	4 cut(s)	794, 831, 1087, 1454
AsuHPI	GGTGA	3 cut(s)	776, 890, 1315
AvaII	GGWCC	3 cut(s)	794, 1087, 1454
BaeI	ACNNNNGTAYC	2 cut(s)	448, 481
BanI	GGYRCC	1 cut(s)	1335
BanII	GRGCYC	1 cut(s)	892
BauI	CACGAG	2 cut(s)	467, 1422
BbrPI	CACGTG	2 cut(s)	476, 1268
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	119, 1085
BccI	CCATC	8 cut(s)	805, 1088, 1172, 1238, 1321, 1445, 1490, 1593
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	1476
BciVI	GTATCC	1 cut(s)	1314
BcoDI	GTCTC	2 cut(s)	470, 1266
BfaI	CTAG	2 cut(s)	32, 342
BfmI	CTRYAG	1 cut(s)	1401
BfoI	RGCGCY	1 cut(s)	1339
BfuI	GTATCC	1 cut(s)	1314
BisI	GCNGC	4 cut(s)	133, 324, 1048, 1074
BlsI	GCNGC	4 cut(s)	134, 325, 1049, 1075
Bme1390I	CCNGG	1 cut(s)	1476
Bme18I	GGWCC	3 cut(s)	794, 1087, 1454
BmgT120I	GGNCC	4 cut(s)	794, 831, 1087, 1454
BmiI	GGNNCC	3 cut(s)	969, 1249, 1337
BmrFI	CCNGG	1 cut(s)	1476
BmsI	GCATC	1 cut(s)	1056
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	2 cut(s)	696, 1349
BsaAI	YACGTR	2 cut(s)	476, 1268
BsaHI	GRCGYC	1 cut(s)	1336
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	971, 1200, 1376
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 1206, 1332
Bse1I	ACTGG	2 cut(s)	600, 713
Bse3DI	GCAATG	3 cut(s)	784, 852, 1083
BseBI	CCWGG	1 cut(s)	1476
BseDI	CCNNGG	3 cut(s)	971, 1200, 1376
BseGI	GGATG	2 cut(s)	378, 1147
BseLI	CCNNNNNNNGG	3 cut(s)	257, 1206, 1332
BseMI	GCAATG	3 cut(s)	784, 852, 1083
BseMII	CTCAG	2 cut(s)	1425, 1472
BseNI	ACTGG	2 cut(s)	600, 713
BseRI	GAGGAG	2 cut(s)	1180, 1362
BseXI	GCAGC	2 cut(s)	119, 1085
BshFI	GGCC	5 cut(s)	450, 493, 833, 846, 1047
BshNI	GGYRCC	1 cut(s)	1335
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	3 cut(s)	257, 1206, 1332
BsmAI	GTCTC	2 cut(s)	470, 1266
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	5 cut(s)	450, 493, 833, 846, 1047
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp143I	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
Bsp19I	CCATGG	1 cut(s)	1376
BspACI	CCGC	3 cut(s)	89, 323, 1048
BspANI	GGCC	5 cut(s)	450, 493, 833, 846, 1047
BspCNI	CTCAG	2 cut(s)	1426, 1471
BspHI	TCATGA	1 cut(s)	1512
BspLI	GGNNCC	3 cut(s)	969, 1249, 1337
BspPI	GGATC	2 cut(s)	1119, 1302
BspT107I	GGYRCC	1 cut(s)	1335
BspTNI	GGTCTC	1 cut(s)	470
BsrDI	GCAATG	3 cut(s)	784, 852, 1083
BsrI	ACTGG	2 cut(s)	600, 713
BssECI	CCNNGG	3 cut(s)	971, 1200, 1376
BssMI	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
BssNI	GRCGYC	1 cut(s)	1336
BssSI	CACGAG	2 cut(s)	467, 1422
BssT1I	CCWWGG	2 cut(s)	971, 1376
Bst2BI	CACGAG	2 cut(s)	467, 1422
Bst2UI	CCWGG	1 cut(s)	1476
Bst4CI	ACNGT	3 cut(s)	572, 1009, 1036
Bst6I	CTCTTC	2 cut(s)	154, 1562
BstACI	GRCGYC	1 cut(s)	1336
BstBAI	YACGTR	2 cut(s)	476, 1268
BstC8I	GCNNGC	5 cut(s)	217, 495, 541, 775, 1071
BstDEI	CTNAG	4 cut(s)	530, 581, 1434, 1458
BstDSI	CCRYGG	2 cut(s)	1200, 1376
BstENI	CCTNNNNNAGG	1 cut(s)	1330
BstF5I	GGATG	2 cut(s)	378, 1147
BstH2I	RGCGCY	1 cut(s)	1339
BstHHI	GCGC	1 cut(s)	1338
BstKTI	GATC	5 cut(s)	688, 878, 1114, 1147, 1297
BstMAI	GTCTC	2 cut(s)	470, 1266
BstMBI	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 946, 1066, 1533
BstNI	CCWGG	1 cut(s)	1476
BstNSI	RCATGY	3 cut(s)	219, 777, 1060
BstSCI	CCNGG	1 cut(s)	1474
BstSFI	CTRYAG	1 cut(s)	1401
BstV1I	GCAGC	2 cut(s)	119, 1085
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	1111, 1294
BstYI	RGATCY	2 cut(s)	1111, 1294
BsuI	GTATCC	1 cut(s)	1314
BsuRI	GGCC	5 cut(s)	450, 493, 833, 846, 1047
BtgI	CCRYGG	2 cut(s)	1200, 1376
BtgZI	GCGATG	1 cut(s)	1191
BtsCI	GGATG	2 cut(s)	378, 1147
BtsIMutI	CAGTG	1 cut(s)	1466
Cac8I	GCNNGC	5 cut(s)	217, 495, 541, 775, 1071
CaiI	CAGNNNCTG	1 cut(s)	1034
CciI	TCATGA	1 cut(s)	1512
CfoI	GCGC	1 cut(s)	1338
Cfr13I	GGNCC	4 cut(s)	794, 831, 1087, 1454
Csp6I	GTAC	2 cut(s)	457, 599
CspCI	CAANNNNNGTGG	2 cut(s)	939, 974
CviQI	GTAC	2 cut(s)	457, 599
DdeI	CTNAG	4 cut(s)	530, 581, 1434, 1458
DinI	GGCGCC	1 cut(s)	1337
DpnI	GATC	5 cut(s)	687, 877, 1113, 1146, 1296
DpnII	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
DraI	TTTAAA	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	154, 1562
EarI	CTCTTC	2 cut(s)	154, 1562
Eco130I	CCWWGG	2 cut(s)	971, 1376
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	892
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	3 cut(s)	794, 1087, 1454
Eco57I	CTGAAG	2 cut(s)	1277, 1460
Eco72I	CACGTG	2 cut(s)	476, 1268
EcoNI	CCTNNNNNAGG	1 cut(s)	1330
EcoRII	CCWGG	1 cut(s)	1474
EcoT14I	CCWWGG	2 cut(s)	971, 1376
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	892
EgeI	GGCGCC	1 cut(s)	1337
EheI	GGCGCC	1 cut(s)	1337
ErhI	CCWWGG	2 cut(s)	971, 1376
FalI	AAGNNNNNCTT	4 cut(s)	595, 627, 995, 1027
FaqI	GGGAC	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	133, 324, 1048, 1074
FokI	GGATG	2 cut(s)	385, 1154
FriOI	GRGCYC	1 cut(s)	892
Fsp4HI	GCNGC	4 cut(s)	133, 324, 1048, 1074
FspBI	CTAG	2 cut(s)	32, 342
GlaI	GCGC	1 cut(s)	1337
GluI	GCNGC	4 cut(s)	133, 324, 1048, 1074
GsuI	CTGGAG	2 cut(s)	696, 1349
HaeII	RGCGCY	1 cut(s)	1339
HaeIII	GGCC	5 cut(s)	450, 493, 833, 846, 1047
HhaI	GCGC	1 cut(s)	1338
Hin1I	GRCGYC	1 cut(s)	1336
Hin6I	GCGC	1 cut(s)	1336
HinP1I	GCGC	1 cut(s)	1336
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	3 cut(s)	776, 890, 1315
Hpy166II	GTNNAC	1 cut(s)	1323
Hpy188I	TCNGA	6 cut(s)	10, 154, 668, 802, 924, 1435
Hpy188III	TCNNGA	5 cut(s)	32, 310, 981, 1003, 1513
Hpy8I	GTNNAC	1 cut(s)	1323
HpyAV	CCTTC	3 cut(s)	480, 1132, 1233
HpyCH4III	ACNGT	3 cut(s)	572, 1009, 1036
HpyCH4IV	ACGT	2 cut(s)	475, 1267
HpyCH4V	TGCA	7 cut(s)	16, 215, 725, 777, 1069, 1217, 1585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 946, 1066, 1533
HpyF3I	CTNAG	4 cut(s)	530, 581, 1434, 1458
HpySE526I	ACGT	2 cut(s)	475, 1267
Hsp92I	GRCGYC	1 cut(s)	1336
HspAI	GCGC	1 cut(s)	1336
KasI	GGCGCC	1 cut(s)	1335
Kzo9I	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
LmnI	GCTCC	2 cut(s)	715, 1097
Lsp1109I	GCAGC	2 cut(s)	119, 1085
LweI	GCATC	1 cut(s)	1056
MaeI	CTAG	2 cut(s)	32, 342
MaeII	ACGT	2 cut(s)	475, 1267
MaeIII	GTNAC	4 cut(s)	403, 471, 1030, 1260
MalI	GATC	5 cut(s)	687, 877, 1113, 1146, 1296
MboI	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
MflI	RGATCY	2 cut(s)	1111, 1294
MhlI	GDGCHC	1 cut(s)	892
MluCI	AATT	8 cut(s)	63, 114, 286, 498, 517, 619, 659, 859
Mly113I	GGCGCC	1 cut(s)	1336
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	7 cut(s)	41, 68, 195, 393, 618, 1230, 1236
MslI	CAYNNNNRTG	1 cut(s)	1061
MspA1I	CMGCKG	1 cut(s)	992
MspR9I	CCNGG	1 cut(s)	1476
MvaI	CCWGG	1 cut(s)	1476
MwoI	GCNNNNNNNGC	4 cut(s)	116, 946, 1066, 1533
NarI	GGCGCC	1 cut(s)	1336
NcoI	CCATGG	1 cut(s)	1376
NdeII	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
NlaIV	GGNNCC	3 cut(s)	969, 1249, 1337
NmeAIII	GCCGAG	1 cut(s)	1186
NmuCI	GTSAC	2 cut(s)	403, 471
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	3 cut(s)	219, 777, 1060
PaeI	GCATGC	2 cut(s)	219, 777
PagI	TCATGA	1 cut(s)	1512
PceI	AGGCCT	1 cut(s)	846
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	1085
PfoI	TCCNGGA	1 cut(s)	1474
PkrI	GCNGC	4 cut(s)	134, 325, 1049, 1075
PluTI	GGCGCC	1 cut(s)	1339
PmaCI	CACGTG	2 cut(s)	476, 1268
PmlI	CACGTG	2 cut(s)	476, 1268
Ppu21I	YACGTR	2 cut(s)	476, 1268
PshBI	ATTAAT	1 cut(s)	1230
Psp6I	CCWGG	1 cut(s)	1474
PspCI	CACGTG	2 cut(s)	476, 1268
PspGI	CCWGG	1 cut(s)	1474
PspN4I	GGNNCC	3 cut(s)	969, 1249, 1337
PspPI	GGNCC	4 cut(s)	794, 831, 1087, 1454
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	2 cut(s)	1111, 1294
PsyI	GACNNNGTC	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	2 cut(s)	458, 600
RsaNI	GTAC	2 cut(s)	457, 599
RseI	CAYNNNNRTG	1 cut(s)	1061
SaqAI	TTAA	7 cut(s)	41, 68, 195, 393, 618, 1230, 1236
SatI	GCNGC	4 cut(s)	133, 324, 1048, 1074
Sau3AI	GATC	5 cut(s)	685, 875, 1111, 1144, 1294
Sau96I	GGNCC	4 cut(s)	794, 831, 1087, 1454
ScrFI	CCNGG	1 cut(s)	1476
SduI	GDGCHC	1 cut(s)	892
SfaNI	GCATC	1 cut(s)	1056
SfcI	CTRYAG	1 cut(s)	1401
SfoI	GGCGCC	1 cut(s)	1337
SinI	GGWCC	3 cut(s)	794, 1087, 1454
SmiMI	CAYNNNNRTG	1 cut(s)	1061
SphI	GCATGC	2 cut(s)	219, 777
Sse9I	AATT	8 cut(s)	63, 114, 286, 498, 517, 619, 659, 859
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	3 cut(s)	89, 323, 1048
SspDI	GGCGCC	1 cut(s)	1335
SspI	AATATT	2 cut(s)	193, 1234
SspMI	CTAG	2 cut(s)	32, 342
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	1 cut(s)	1474
StyI	CCWWGG	2 cut(s)	971, 1376
TaaI	ACNGT	3 cut(s)	572, 1009, 1036
TaiI	ACGT	2 cut(s)	478, 1270
TasI	AATT	8 cut(s)	63, 114, 286, 498, 517, 619, 659, 859
TauI	GCSGC	2 cut(s)	326, 1050
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	7 cut(s)	41, 68, 195, 393, 618, 1230, 1236
Tru9I	TTAA	7 cut(s)	41, 68, 195, 393, 618, 1230, 1236
TscAI	CASTG	1 cut(s)	1466
TseFI	GTSAC	2 cut(s)	403, 471
TseI	GCWGC	2 cut(s)	132, 1073
Tsp45I	GTSAC	2 cut(s)	403, 471
TspGWI	ACGGA	1 cut(s)	1189
TspRI	CASTG	1 cut(s)	1466
Tth111I	GACNNNGTC	1 cut(s)	1085
VpaK11BI	GGWCC	3 cut(s)	794, 1087, 1454
VspI	ATTAAT	1 cut(s)	1230
XagI	CCTNNNNNAGG	1 cut(s)	1330
XapI	RAATTY	2 cut(s)	286, 659
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	3 cut(s)	219, 777, 1060
XspI	CTAG	2 cut(s)	32, 342
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.