Rorug06G0357300

Calcineurin-like phosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005367
Physical Location & Seq
Reverse (-)
50465868 .. 50466701
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0357300.1

Sequence Viewer

Length: 612 bp
ATGGCTCTCATTCGCTTCCTCCTTCCCACATGTATGGTTTTCTTTTCATTGCTAATCGTCAATGCCTCTGCTACTAATTATGGCTATGGTCCAAAACCACCACAGGTTCAGAAACCAAAACCTCCACAGCTCCAGAAACCAAAACCGCCACAGGTGGAGAAACCAAAACCAGATCAGTTGTATGGAGAGATACTACCTCACAATCTCTTCGGCATTCAAGGGCTTGTTTTATGCAACTCTGGCTCTAAAGCCTTCCCAATTCAAGGAGCTGTGGCCAGGATTACCTGTTTGGGTAAGGACGAAAATGGGTACGAGACTGCACCTCTCTCCATCTTAAGCGGTGCAACTGATGCAAAGGGTTACTTCTTTGCAACATTGTCACCTTCAAAGCTTGTAGGCAACTACAACAAGAAGTGGAAGCTCACAAAGTGTACTGCATTCCTTAACAATTCTCCATTGGAGAGCTGCAAAGTCCCCACTGATGTCAACCATGGTATTAGTGGTGCTCCGCTTGCTTCTTATCGCCCTCTCAATGCCAAGAACATGAAGTTGTTCTCTGTTGGACCCTTCTTCTACACCTCAGAACCTAAACCAGCCCCTAAAGGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

203

Amino Acids

22.06

Weight (kDa)

9.58

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 72 - 168 8e-18 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 146, 339, 509
AcoI YGGCCR 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 429
AfaI GTAC 2 cut(s) 311, 433
AfiI CCNNNNNNNGG 1 cut(s) 263
AflII CTTAAG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 218, 263, 387
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 5 cut(s) 130, 269, 391, 421, 465
AluI AGCT 5 cut(s) 130, 269, 391, 421, 465
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 89, 563
AsuHPI GGTGA 1 cut(s) 372
AvaII GGWCC 2 cut(s) 89, 563
BalI TGGCCA 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 1 cut(s) 452
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 89, 563
BmgT120I GGNCC 2 cut(s) 89, 563
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 490
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 594
BseXI GCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 508
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 2 cut(s) 213, 437
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 3 cut(s) 146, 339, 509
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 593
BspLI GGNNCC 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 490
Bst2UI CCWGG 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 212
BstAFI CTTAAG 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 580
BstDSI CCRYGG 1 cut(s) 490
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 240, 350, 512
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 513
Cfr13I GGNCC 2 cut(s) 89, 563
Csp6I GTAC 2 cut(s) 310, 432
CviAII CATG 3 cut(s) 30, 491, 544
CviQI GTAC 2 cut(s) 310, 432
DdeI CTNAG 1 cut(s) 580
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraIII CACNNNGTG 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 490
Eco47I GGWCC 2 cut(s) 89, 563
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 490
FaeI CATG 3 cut(s) 33, 494, 547
FaiI YATR 8 cut(s) 31, 35, 81, 87, 183, 232, 492, 545
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 29, 490, 543
Fnu4HI GCNGC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 466
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 3 cut(s) 33, 494, 547
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 389
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 432, 487
Hpy188I TCNGA 2 cut(s) 111, 583
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 432, 487
HpyAV CCTTC 4 cut(s) 32, 262, 393, 577
HpyCH4V TGCA 7 cut(s) 234, 320, 344, 353, 371, 437, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 350, 512
HpyF3I CTNAG 1 cut(s) 580
Hsp92II CATG 3 cut(s) 33, 494, 547
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 135, 266, 511
LpnPI CCDG 9 cut(s) 89, 137, 146, 183, 225, 262, 289, 298, 606
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 359, 378
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 199, 562
MhlI GDGCHC 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 3 cut(s) 76, 258, 448
MluNI TGGCCA 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 7 cut(s) 29, 76, 132, 207, 333, 537, 589
Mox20I TGGCCA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 275
MseI TTAA 3 cut(s) 335, 444, 610
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 2 cut(s) 213, 437
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 240, 350, 512
NcoI CCATGG 1 cut(s) 490
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 33, 494, 547
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 378
NspI RCATGY 1 cut(s) 33
PciI ACATGT 1 cut(s) 29
PctI GAATGC 2 cut(s) 213, 437
PdmI GAANNNNTTC 1 cut(s) 551
PkrI GCNGC 1 cut(s) 467
PscI ACATGT 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 2 cut(s) 89, 563
RsaI GTAC 2 cut(s) 311, 433
RsaNI GTAC 2 cut(s) 310, 432
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 3 cut(s) 335, 444, 610
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 89, 563
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 2 cut(s) 89, 563
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 3 cut(s) 76, 258, 448
SsiI CCGC 3 cut(s) 146, 339, 509
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 490
TasI AATT 3 cut(s) 76, 258, 448
TatI WGTACW 1 cut(s) 431
Tru1I TTAA 3 cut(s) 335, 444, 610
Tru9I TTAA 3 cut(s) 335, 444, 610
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 2 cut(s) 36, 560
TspRI CASTG 1 cut(s) 484
Vha464I CTTAAG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 89, 563
XceI RCATGY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.