pycom08g09440

transcriptional regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015073
Physical Location & Seq
Forward (+)
7719970 .. 7722126
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
ATGCGGCGGCAAACAGTGATGGGGTCGTCTAGTACAATGAGAGCATTAGGAGCAATTGTTCACAGATTCAGCAATGGCGTCTCCTCCAAGTCCCTTAACTCCTTGGCTCTTCACTGGAATGTTCTGCTGAGCAGAAAGTTATCGTATTCATCTGCAATTTCATCATTGCCGCCATGGGTTTTGACCCACATGCACGGCGGCGCTGCAGCGAGAAGAACCATATGGACCGTCGCTCCTCTCTGTATGGGCAGGCGTTCCAGCAAAATCGCCGGCCGAAAGGGGGCTCAAGATGCAAAGAAGGCAAAGCTATATAGCAGGATAGGGAAGGAAGTTGTTTCTGCTGTAAAGAAAGGCGGTCCAAGTCCTATATCGAATATGGCCCTGGCAACTGTTTTAGAGAAAGCCAAGGAGCTGGATGTACCCAAGGAAATTGTGGAGCGCAACATTAAGAAAGCATCTGAGAAAGGACAAGAAGCTTACATTGAGAAAGTATACGAGGTATATGGTTTTGGTGGAGCTTGTATGGTAGTCGAGGTCTTGACTGATAAAATAAACCGGTCTGTGGCAGCAGTTAGAGAGGTGTTGAAGGACTGTGGGGCGAAGATGGCTGACTCAGGATCTGTTTTGTTCAAATTCAGGCGTGCTCGGGTTGTAAACATAAAAGCTTCAGATGTTGATAAAGATCAGCTCCTTTCCATTGCTTTAGATGCTGGTGCTGAGGATGTTATAGAACCACCAGTATATGAAGATGATACCGAAGATAATTCAGAAGGATATTTCAAAATCGTAAGCTCATCAGAGAACTACACAACAGTACTTTCAAAGCTACGTGAGGAAGGAGTAAGTTTTGAGACGGATAATGGTTCTGAGCTGCTTCCAATAAGCGCTATTGAGGTAGATGACGAGGCTATGGAGTTGAACAAGGAACTTATGTCCCAATTGCTTGAACTTGATGATGTTGATGCTGTGTATACGGACCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

329

Amino Acids

35.85

Weight (kDa)

6.49

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TACO1_YebC_N PF20772 85 - 154 4.4e-23 TACO1/YebC protein N-terminal domain
Transcrip_reg PF01709 160 - 326 2.8e-38 TACO1/YebC second and third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 492, 971
AciI CCGC 5 cut(s) 4, 7, 170, 198, 354
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 3 cut(s) 34, 420, 816
AfeI AGCGCT 1 cut(s) 886
AfiI CCNNNNNNNGG 2 cut(s) 280, 562
AgeI ACCGGT 1 cut(s) 555
AgsI TTSAA 6 cut(s) 586, 631, 781, 822, 919, 947
AjnI CCWGG 1 cut(s) 381
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
AluBI AGCT 9 cut(s) 307, 412, 476, 518, 665, 688, 792, 826, 871
AluI AGCT 9 cut(s) 307, 412, 476, 518, 665, 688, 792, 826, 871
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 85, 845
AlwI GGATC 1 cut(s) 625
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 645
Aor51HI AGCGCT 1 cut(s) 886
AoxI GGCC 2 cut(s) 271, 378
ApeKI GCWGC 4 cut(s) 203, 206, 566, 871
ApoI RAATTY 1 cut(s) 632
AsiGI ACCGGT 1 cut(s) 555
AspLEI GCGC 3 cut(s) 203, 441, 887
AspS9I GGNCC 4 cut(s) 225, 356, 379, 976
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 3 cut(s) 225, 356, 976
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 646
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 190, 218, 578, 858
BccI CCATC 2 cut(s) 13, 598
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 85, 845
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 204
BfoI RGCGCY 2 cut(s) 204, 888
BisI GCNGC 8 cut(s) 5, 8, 170, 199, 204, 207, 567, 872
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 8 cut(s) 6, 9, 171, 200, 205, 208, 568, 873
BmcAI AGTACT 1 cut(s) 816
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 3 cut(s) 225, 356, 976
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 4 cut(s) 225, 356, 379, 976
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 4 cut(s) 280, 464, 697, 952
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 5 cut(s) 102, 173, 381, 405, 423
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 562
Bse118I RCCGGY 2 cut(s) 269, 555
Bse1I ACTGG 2 cut(s) 119, 737
Bse3DI GCAATG 3 cut(s) 79, 164, 696
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 5 cut(s) 102, 173, 381, 405, 423
BseGI GGATG 2 cut(s) 421, 727
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 280, 562
BseMI GCAATG 3 cut(s) 79, 164, 696
BseMII CTCAG 5 cut(s) 119, 450, 627, 708, 858
BseNI ACTGG 2 cut(s) 119, 737
BseRI GAGGAG 2 cut(s) 73, 225
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 4 cut(s) 190, 218, 578, 858
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 273, 380
BshTI ACCGGT 1 cut(s) 555
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 2 cut(s) 270, 556
BslFI GGGAC 2 cut(s) 76, 919
BslI CCNNNNNNNGG 2 cut(s) 280, 562
BsmAI GTCTC 2 cut(s) 85, 845
BsmBI CGTCTC 2 cut(s) 85, 845
BsmFI GGGAC 2 cut(s) 76, 919
BsnI GGCC 2 cut(s) 273, 380
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 2 cut(s) 286, 646
Bsp143I GATC 2 cut(s) 617, 682
Bsp1720I GCTNAGC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 5 cut(s) 4, 7, 170, 198, 354
BspANI GGCC 2 cut(s) 273, 380
BspCNI CTCAG 5 cut(s) 120, 451, 626, 709, 859
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 625
BspQI GCTCTTC 1 cut(s) 114
BsrDI GCAATG 3 cut(s) 79, 164, 696
BsrFI RCCGGY 2 cut(s) 269, 555
BsrI ACTGG 2 cut(s) 119, 737
BssAI RCCGGY 2 cut(s) 269, 555
BssECI CCNNGG 5 cut(s) 102, 173, 381, 405, 423
BssMI GATC 2 cut(s) 617, 682
BssNAI GTATAC 2 cut(s) 493, 972
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 4 cut(s) 102, 173, 405, 423
Bst1107I GTATAC 2 cut(s) 493, 972
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 5 cut(s) 16, 229, 391, 593, 814
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 830
BstC8I GCNNGC 3 cut(s) 251, 271, 642
BstDEI CTNAG 5 cut(s) 128, 459, 613, 717, 867
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 421, 727
BstH2I RGCGCY 2 cut(s) 204, 888
BstHHI GCGC 3 cut(s) 203, 441, 887
BstKTI GATC 2 cut(s) 620, 685
BstMAI GTCTC 2 cut(s) 85, 845
BstMBI GATC 2 cut(s) 617, 682
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 5 cut(s) 50, 290, 299, 605, 707
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 381
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 190, 218, 578, 858
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 1 cut(s) 617
BstZ17I GTATAC 2 cut(s) 493, 972
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 273, 380
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 421, 727
BtsIMutI CAGTG 2 cut(s) 21, 112
Cac8I GCNNGC 3 cut(s) 251, 271, 642
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 3 cut(s) 203, 441, 887
Cfr10I RCCGGY 2 cut(s) 269, 555
Cfr13I GGNCC 4 cut(s) 225, 356, 379, 976
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 33, 419, 815
CspAI ACCGGT 1 cut(s) 555
CviAII CATG 2 cut(s) 174, 190
CviQI GTAC 3 cut(s) 33, 419, 815
DdeI CTNAG 5 cut(s) 128, 459, 613, 717, 867
DpnI GATC 2 cut(s) 619, 684
DpnII GATC 2 cut(s) 617, 682
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 4 cut(s) 102, 173, 405, 423
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 225, 356, 976
Eco47III AGCGCT 1 cut(s) 886
Eco52I CGGCCG 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 4 cut(s) 102, 173, 405, 423
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 4 cut(s) 102, 173, 405, 423
Esp3I CGTCTC 2 cut(s) 85, 845
FaeI CATG 2 cut(s) 177, 193
FaqI GGGAC 2 cut(s) 76, 919
FatI CATG 2 cut(s) 173, 189
FauNDI CATATG 1 cut(s) 221
FblI GTMKAC 2 cut(s) 492, 971
Fnu4HI GCNGC 8 cut(s) 5, 8, 170, 199, 204, 207, 567, 872
FokI GGATG 2 cut(s) 428, 734
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 8 cut(s) 5, 8, 170, 199, 204, 207, 567, 872
FspBI CTAG 1 cut(s) 30
GlaI GCGC 3 cut(s) 202, 440, 886
GluI GCNGC 8 cut(s) 5, 8, 170, 199, 204, 207, 567, 872
HaeII RGCGCY 2 cut(s) 204, 888
HaeIII GGCC 2 cut(s) 273, 380
HapII CCGG 2 cut(s) 270, 556
HgaI GACGC 1 cut(s) 67
HhaI GCGC 3 cut(s) 203, 441, 887
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 177, 193
Hin6I GCGC 3 cut(s) 201, 439, 885
HinP1I GCGC 3 cut(s) 201, 439, 885
HindIII AAGCTT 2 cut(s) 474, 663
HinfI GANTC 2 cut(s) 66, 611
HpaII CCGG 2 cut(s) 270, 556
Hpy166II GTNNAC 4 cut(s) 61, 493, 655, 972
Hpy188I TCNGA 5 cut(s) 460, 670, 769, 799, 868
Hpy188III TCNNGA 3 cut(s) 287, 538, 615
Hpy8I GTNNAC 4 cut(s) 61, 493, 655, 972
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 292, 319, 580, 764, 830
HpyCH4III ACNGT 5 cut(s) 16, 229, 391, 593, 814
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 4 cut(s) 155, 193, 206, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 290, 299, 605, 707
HpyF3I CTNAG 5 cut(s) 128, 459, 613, 717, 867
HpySE526I ACGT 1 cut(s) 829
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 177, 193
HspAI GCGC 3 cut(s) 201, 439, 885
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 617, 682
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 6 cut(s) 50, 238, 409, 436, 515, 693
Lsp1109I GCAGC 4 cut(s) 190, 218, 578, 858
LweI GCATC 4 cut(s) 280, 464, 697, 952
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 829
MalI GATC 2 cut(s) 619, 684
MboI GATC 2 cut(s) 617, 682
MboII GAAGA 5 cut(s) 101, 225, 613, 758, 770
MfeI CAATTG 2 cut(s) 54, 938
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 2 cut(s) 286, 646
MluCI AATT 6 cut(s) 54, 156, 429, 632, 763, 938
MlyI GAGTC 1 cut(s) 605
MnlI CCTC 9 cut(s) 94, 246, 490, 526, 571, 712, 826, 886, 898
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 2 cut(s) 96, 447
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 2 cut(s) 270, 556
MspR9I CCNGG 1 cut(s) 383
MunI CAATTG 2 cut(s) 54, 938
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 50, 290, 299, 605, 707
NaeI GCCGGC 1 cut(s) 271
NcoI CCATGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 221
NdeII GATC 2 cut(s) 617, 682
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 2 cut(s) 177, 193
NspI RCATGY 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 66
PinAI ACCGGT 1 cut(s) 555
PkrI GCNGC 8 cut(s) 6, 9, 171, 200, 205, 208, 568, 873
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
Ppu21I YACGTR 1 cut(s) 830
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspPI GGNCC 4 cut(s) 225, 356, 379, 976
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 3 cut(s) 34, 420, 816
RsaNI GTAC 3 cut(s) 33, 419, 815
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 96, 447
SatI GCNGC 8 cut(s) 5, 8, 170, 199, 204, 207, 567, 872
Sau3AI GATC 2 cut(s) 617, 682
Sau96I GGNCC 4 cut(s) 225, 356, 379, 976
ScaI AGTACT 1 cut(s) 816
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 2 cut(s) 286, 646
SfaNI GCATC 4 cut(s) 280, 464, 697, 952
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 3 cut(s) 225, 356, 976
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 6 cut(s) 54, 156, 429, 632, 763, 938
SsiI CCGC 5 cut(s) 4, 7, 170, 198, 354
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 4 cut(s) 102, 173, 405, 423
TaaI ACNGT 5 cut(s) 16, 229, 391, 593, 814
TaiI ACGT 1 cut(s) 832
TaqI TCGA 2 cut(s) 371, 531
TasI AATT 6 cut(s) 54, 156, 429, 632, 763, 938
TatI WGTACW 2 cut(s) 32, 814
TauI GCSGC 4 cut(s) 7, 10, 172, 201
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 2 cut(s) 96, 447
Tru9I TTAA 2 cut(s) 96, 447
TscAI CASTG 2 cut(s) 21, 119
TseI GCWGC 4 cut(s) 203, 206, 566, 871
TspDTI ATGAA 3 cut(s) 138, 150, 759
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 2 cut(s) 21, 119
VpaK11BI GGWCC 3 cut(s) 225, 356, 976
XapI RAATTY 1 cut(s) 632
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 492, 971
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.