Auxin transport protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02260 AT3G02260 AT3G02260 AT3G02260 |
| fragaria_vesca | FvH4_6g46320 FvH4_6g46320 |
| malus_domestica | MD09G1075600.v1.1 MD17G1066300.v1.1 |
| prunus_persica | Prupe.3G248400_v2.0.a1 Prupe.3G248400_v2.0.a1 Prupe.3G248400_v2.0.a1 |
| pyrus_communis | pycom09g00280 pycom09g00290 pycom09g00300 pycom17g06650 pycom17g06660 pycom17g06670 pycom17g06680 |
| rosa_chinensis | RchiOBHm_Chr2g0164791 |
| rosa_laevigata | RLG00000021489 |
| rosa_multiflora | Rmu_sc0000946.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00086300 |
| rosa_rugosa | Rorug02G0510400 |
| rosa_samantha | Rh2AG578500 Rh2BG589800 Rh2CG560300 Rh2DG600000 |
| rosa_wichuraiana | Rw2G048030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3817 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| Acc36I | ACCTGC | 2 cut(s) | 3817, 4222 |
| AccI | GTMKAC | 2 cut(s) | 36, 1556 |
| AccII | CGCG | 2 cut(s) | 144, 1020 |
| AciI | CCGC | 9 cut(s) | 144, 240, 269, 314, 1870, 2010, 2353, 2805, 4312 |
| AclI | AACGTT | 1 cut(s) | 712 |
| AclWI | GGATC | 9 cut(s) | 270, 573, 821, 2649, 2966, 3455, 3973, 4486, 4510 |
| AcoI | YGGCCR | 2 cut(s) | 3, 4626 |
| AdeI | CACNNNGTG | 1 cut(s) | 702 |
| AfaI | GTAC | 7 cut(s) | 1172, 1325, 2248, 2346, 2378, 2698, 4736 |
| AflII | CTTAAG | 1 cut(s) | 4399 |
| AflIII | ACRYGT | 2 cut(s) | 1173, 3018 |
| AhlI | ACTAGT | 1 cut(s) | 1208 |
| AjiI | CACGTC | 1 cut(s) | 3021 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3975, 4007, 4238, 4270 |
| AleI | CACNNNNGTG | 1 cut(s) | 3891 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3963, 3995 |
| Alw21I | GWGCWC | 3 cut(s) | 2227, 3522, 3663 |
| AlwI | GGATC | 9 cut(s) | 270, 573, 821, 2649, 2966, 3455, 3973, 4486, 4510 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 82, 911 |
| Ama87I | CYCGRG | 3 cut(s) | 116, 1769, 3821 |
| ApaI | GGGCCC | 1 cut(s) | 4675 |
| ApeKI | GCWGC | 9 cut(s) | 686, 1121, 1124, 1476, 1628, 2627, 2845, 3376, 3850 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1002, 1014, 3576, 4194 |
| AspLEI | GCGC | 4 cut(s) | 87, 379, 428, 745 |
| AsuHPI | GGTGA | 7 cut(s) | 1858, 2410, 3841, 3869, 3962, 4137, 4631 |
| AsuNHI | GCTAGC | 1 cut(s) | 1969 |
| AvaI | CYCGRG | 3 cut(s) | 116, 1769, 3821 |
| AvaII | GGWCC | 6 cut(s) | 189, 524, 2355, 2707, 4314, 4528 |
| BaeGI | GKGCMC | 1 cut(s) | 4675 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3697, 3730, 4726, 4759 |
| BalI | TGGCCA | 1 cut(s) | 4628 |
| BanII | GRGCYC | 2 cut(s) | 180, 4675 |
| BbsI | GAAGAC | 3 cut(s) | 1005, 2066, 3110 |
| Bbv12I | GWGCWC | 3 cut(s) | 2227, 3522, 3663 |
| BbvI | GCAGC | 9 cut(s) | 698, 1108, 1111, 1488, 1615, 2614, 2832, 3363, 3862 |
| BceAI | ACGGC | 3 cut(s) | 61, 181, 215 |
| BciVI | GTATCC | 3 cut(s) | 3725, 4150, 4648 |
| BclI | TGATCA | 4 cut(s) | 1570, 2404, 2878, 3082 |
| BcuI | ACTAGT | 1 cut(s) | 1208 |
| BfmI | CTRYAG | 7 cut(s) | 74, 444, 1557, 1987, 2628, 4172, 4584 |
| BfrI | CTTAAG | 1 cut(s) | 4399 |
| BfuAI | ACCTGC | 2 cut(s) | 3817, 4222 |
| BfuI | GTATCC | 3 cut(s) | 3725, 4150, 4648 |
| BlpI | GCTNAGC | 1 cut(s) | 1715 |
| Bme18I | GGWCC | 6 cut(s) | 189, 524, 2355, 2707, 4314, 4528 |
| BmeT110I | CYCGRG | 3 cut(s) | 116, 1769, 3821 |
| BmgBI | CACGTC | 1 cut(s) | 3021 |
| BmiI | GGNNCC | 5 cut(s) | 179, 2373, 4488, 4555, 4673 |
| BmrI | ACTGGG | 2 cut(s) | 630, 2578 |
| BmtI | GCTAGC | 1 cut(s) | 1973 |
| BmuI | ACTGGG | 2 cut(s) | 630, 2578 |
| BoxI | GACNNNNGTC | 1 cut(s) | 782 |
| BpiI | GAAGAC | 3 cut(s) | 1005, 2066, 3110 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2356, 2388 |
| BpmI | CTGGAG | 3 cut(s) | 1585, 2983, 3305 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1715 |
| BpuEI | CTTGAG | 5 cut(s) | 513, 1181, 2035, 2929, 3631 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaAI | YACGTR | 1 cut(s) | 1160 |
| BsaI | GGTCTC | 4 cut(s) | 2, 1423, 1521, 2428 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2360, 2390 |
| Bse3DI | GCAATG | 2 cut(s) | 738, 4351 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseMI | GCAATG | 2 cut(s) | 738, 4351 |
| BseRI | GAGGAG | 3 cut(s) | 79, 82, 3711 |
| BseSI | GKGCMC | 1 cut(s) | 4675 |
| BseXI | GCAGC | 9 cut(s) | 698, 1108, 1111, 1488, 1615, 2614, 2832, 3363, 3862 |
| BseYI | CCCAGC | 3 cut(s) | 773, 2262, 2898 |
| BsgI | GTGCAG | 2 cut(s) | 1015, 3869 |
| Bsh1236I | CGCG | 2 cut(s) | 144, 1020 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2227, 3522, 3663 |
| BsiHKCI | CYCGRG | 3 cut(s) | 116, 1769, 3821 |
| BslFI | GGGAC | 5 cut(s) | 747, 790, 2466, 2972, 3803 |
| BsmBI | CGTCTC | 2 cut(s) | 156, 4102 |
| BsmFI | GGGAC | 5 cut(s) | 747, 790, 2466, 2972, 3803 |
| BsmI | GAATGC | 5 cut(s) | 360, 705, 3220, 3429, 3576 |
| Bso31I | GGTCTC | 4 cut(s) | 2, 1423, 1521, 2428 |
| BsoBI | CYCGRG | 3 cut(s) | 116, 1769, 3821 |
| Bsp120I | GGGCCC | 1 cut(s) | 4671 |
| Bsp1286I | GDGCHC | 5 cut(s) | 180, 2227, 3522, 3663, 4675 |
| Bsp1407I | TGTACA | 2 cut(s) | 1170, 2344 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1715 |
| Bsp19I | CCATGG | 1 cut(s) | 4557 |
| BspACI | CCGC | 9 cut(s) | 144, 240, 269, 314, 1870, 2010, 2353, 2805, 4312 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspFNI | CGCG | 2 cut(s) | 144, 1020 |
| BspLI | GGNNCC | 5 cut(s) | 179, 2373, 4488, 4555, 4673 |
| BspMAI | CTGCAG | 2 cut(s) | 2632, 4176 |
| BspMI | ACCTGC | 2 cut(s) | 3817, 4222 |
| BspOI | GCTAGC | 1 cut(s) | 1973 |
| BspPI | GGATC | 9 cut(s) | 270, 573, 821, 2649, 2966, 3455, 3973, 4486, 4510 |
| BspQI | GCTCTTC | 1 cut(s) | 2214 |
| BspTI | CTTAAG | 1 cut(s) | 4399 |
| BspTNI | GGTCTC | 4 cut(s) | 2, 1423, 1521, 2428 |
| BsrDI | GCAATG | 2 cut(s) | 738, 4351 |
| BsrGI | TGTACA | 2 cut(s) | 1170, 2344 |
| BssT1I | CCWWGG | 2 cut(s) | 4490, 4557 |
| Bst4CI | ACNGT | 7 cut(s) | 300, 1641, 2071, 2246, 3128, 3907, 4664 |
| Bst6I | CTCTTC | 7 cut(s) | 761, 1803, 1890, 2214, 2460, 4028, 4644 |
| BstAFI | CTTAAG | 1 cut(s) | 4399 |
| BstAUI | TGTACA | 2 cut(s) | 1170, 2344 |
| BstBAI | YACGTR | 1 cut(s) | 1160 |
| BstC8I | GCNNGC | 8 cut(s) | 50, 170, 636, 882, 1971, 4338, 4342, 4630 |
| BstDSI | CCRYGG | 2 cut(s) | 1581, 4557 |
| BstEII | GGTNACC | 1 cut(s) | 1864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4637 |
| BstFNI | CGCG | 2 cut(s) | 144, 1020 |
| BstHHI | GCGC | 4 cut(s) | 87, 379, 428, 745 |
| BstNSI | RCATGY | 1 cut(s) | 1177 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 782 |
| BstPI | GGTNACC | 1 cut(s) | 1864 |
| BstSFI | CTRYAG | 7 cut(s) | 74, 444, 1557, 1987, 2628, 4172, 4584 |
| BstSLI | GKGCMC | 1 cut(s) | 4675 |
| BstUI | CGCG | 2 cut(s) | 144, 1020 |
| BstV1I | GCAGC | 9 cut(s) | 698, 1108, 1111, 1488, 1615, 2614, 2832, 3363, 3862 |
| BstV2I | GAAGAC | 3 cut(s) | 1005, 2066, 3110 |
| BstX2I | RGATCY | 4 cut(s) | 2641, 2958, 3978, 4478 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4027 |
| BstYI | RGATCY | 4 cut(s) | 2641, 2958, 3978, 4478 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| BsuI | GTATCC | 3 cut(s) | 3725, 4150, 4648 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtgI | CCRYGG | 2 cut(s) | 1581, 4557 |
| BtrI | CACGTC | 1 cut(s) | 3021 |
| BtsI | GCAGTG | 4 cut(s) | 428, 912, 1045, 2637 |
| BveI | ACCTGC | 2 cut(s) | 3817, 4222 |
| Cac8I | GCNNGC | 8 cut(s) | 50, 170, 636, 882, 1971, 4338, 4342, 4630 |
| CaiI | CAGNNNCTG | 2 cut(s) | 82, 911 |
| CfoI | GCGC | 4 cut(s) | 87, 379, 428, 745 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| CseI | GACGC | 2 cut(s) | 858, 4583 |
| CsiI | ACCWGGT | 1 cut(s) | 1860 |
| Csp6I | GTAC | 7 cut(s) | 1171, 1324, 2247, 2345, 2377, 2697, 4735 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 502, 537, 607, 642 |
| CviQI | GTAC | 7 cut(s) | 1171, 1324, 2247, 2345, 2377, 2697, 4735 |
| DraI | TTTAAA | 3 cut(s) | 2079, 3793, 4308 |
| DraIII | CACNNNGTG | 1 cut(s) | 702 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| EaeI | YGGCCR | 2 cut(s) | 3, 4626 |
| Eam1104I | CTCTTC | 7 cut(s) | 761, 1803, 1890, 2214, 2460, 4028, 4644 |
| EarI | CTCTTC | 7 cut(s) | 761, 1803, 1890, 2214, 2460, 4028, 4644 |
| EciI | GGCGGA | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 2 cut(s) | 4490, 4557 |
| Eco147I | AGGCCT | 2 cut(s) | 925, 4365 |
| Eco24I | GRGCYC | 2 cut(s) | 180, 4675 |
| Eco31I | GGTCTC | 4 cut(s) | 2, 1423, 1521, 2428 |
| Eco32I | GATATC | 3 cut(s) | 1766, 2476, 3685 |
| Eco47I | GGWCC | 6 cut(s) | 189, 524, 2355, 2707, 4314, 4528 |
| Eco88I | CYCGRG | 3 cut(s) | 116, 1769, 3821 |
| Eco91I | GGTNACC | 1 cut(s) | 1864 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4637 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1516, 2110, 3357, 4671, 4672 |
| EcoO65I | GGTNACC | 1 cut(s) | 1864 |
| EcoRI | GAATTC | 1 cut(s) | 3076 |
| EcoRV | GATATC | 3 cut(s) | 1766, 2476, 3685 |
| EcoT14I | CCWWGG | 2 cut(s) | 4490, 4557 |
| EcoT22I | ATGCAT | 3 cut(s) | 1392, 1879, 4136 |
| EcoT38I | GRGCYC | 2 cut(s) | 180, 4675 |
| ErhI | CCWWGG | 2 cut(s) | 4490, 4557 |
| Esp3I | CGTCTC | 2 cut(s) | 156, 4102 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 990, 1022 |
| FaqI | GGGAC | 5 cut(s) | 747, 790, 2466, 2972, 3803 |
| FauI | CCCGC | 1 cut(s) | 1877 |
| FauNDI | CATATG | 1 cut(s) | 2304 |
| FbaI | TGATCA | 4 cut(s) | 1570, 2404, 2878, 3082 |
| FblI | GTMKAC | 2 cut(s) | 36, 1556 |
| FriOI | GRGCYC | 2 cut(s) | 180, 4675 |
| GlaI | GCGC | 4 cut(s) | 86, 378, 427, 744 |
| GsaI | CCCAGC | 3 cut(s) | 777, 2266, 2902 |
| GsuI | CTGGAG | 3 cut(s) | 1585, 2983, 3305 |
| HgaI | GACGC | 2 cut(s) | 858, 4583 |
| HhaI | GCGC | 4 cut(s) | 87, 379, 428, 745 |
| Hin6I | GCGC | 4 cut(s) | 85, 377, 426, 743 |
| HinP1I | GCGC | 4 cut(s) | 85, 377, 426, 743 |
| HincII | GTYRAC | 3 cut(s) | 3910, 3945, 4113 |
| HindII | GTYRAC | 3 cut(s) | 3910, 3945, 4113 |
| HindIII | AAGCTT | 3 cut(s) | 1712, 3150, 4334 |
| HpaI | GTTAAC | 2 cut(s) | 3910, 3945 |
| HphI | GGTGA | 7 cut(s) | 1858, 2410, 3841, 3869, 3962, 4137, 4631 |
| Hpy99I | CGWCG | 2 cut(s) | 161, 236 |
| HpyCH4III | ACNGT | 7 cut(s) | 300, 1641, 2071, 2246, 3128, 3907, 4664 |
| HpyCH4IV | ACGT | 6 cut(s) | 712, 783, 951, 1159, 2921, 3020 |
| HpySE526I | ACGT | 6 cut(s) | 712, 783, 951, 1159, 2921, 3020 |
| HspAI | GCGC | 4 cut(s) | 85, 377, 426, 743 |
| Ksp22I | TGATCA | 4 cut(s) | 1570, 2404, 2878, 3082 |
| KspAI | GTTAAC | 2 cut(s) | 3910, 3945 |
| LguI | GCTCTTC | 1 cut(s) | 2214 |
| LmnI | GCTCC | 9 cut(s) | 92, 183, 750, 1604, 2230, 2377, 3525, 3626, 4492 |
| Lsp1109I | GCAGC | 9 cut(s) | 698, 1108, 1111, 1488, 1615, 2614, 2832, 3363, 3862 |
| MabI | ACCWGGT | 1 cut(s) | 1860 |
| MaeII | ACGT | 6 cut(s) | 712, 783, 951, 1159, 2921, 3020 |
| MfeI | CAATTG | 3 cut(s) | 538, 1222, 3889 |
| MflI | RGATCY | 4 cut(s) | 2641, 2958, 3978, 4478 |
| MhlI | GDGCHC | 5 cut(s) | 180, 2227, 3522, 3663, 4675 |
| MlsI | TGGCCA | 1 cut(s) | 4628 |
| MluNI | TGGCCA | 1 cut(s) | 4628 |
| MmeI | TCCRAC | 5 cut(s) | 120, 285, 2252, 2711, 4008 |
| Mox20I | TGGCCA | 1 cut(s) | 4628 |
| Mph1103I | ATGCAT | 3 cut(s) | 1392, 1879, 4136 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1002, 1014, 3576, 4194 |
| MscI | TGGCCA | 1 cut(s) | 4628 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1178, 1509, 1830, 3891 |
| Msp20I | TGGCCA | 1 cut(s) | 4628 |
| MspA1I | CMGCKG | 4 cut(s) | 689, 2497, 2807, 2845 |
| MspCI | CTTAAG | 1 cut(s) | 4399 |
| MunI | CAATTG | 3 cut(s) | 538, 1222, 3889 |
| Mva1269I | GAATGC | 5 cut(s) | 360, 705, 3220, 3429, 3576 |
| MvnI | CGCG | 2 cut(s) | 144, 1020 |
| NcoI | CCATGG | 1 cut(s) | 4557 |
| NdeI | CATATG | 1 cut(s) | 2304 |
| NheI | GCTAGC | 1 cut(s) | 1969 |
| NlaIV | GGNNCC | 5 cut(s) | 179, 2373, 4488, 4555, 4673 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NmuCI | GTSAC | 5 cut(s) | 1864, 3544, 3704, 3893, 4571 |
| NsiI | ATGCAT | 3 cut(s) | 1392, 1879, 4136 |
| NspI | RCATGY | 1 cut(s) | 1177 |
| OliI | CACNNNNGTG | 1 cut(s) | 3891 |
| PaeR7I | CTCGAG | 1 cut(s) | 116 |
| PaqCI | CACCTGC | 1 cut(s) | 3817 |
| PceI | AGGCCT | 2 cut(s) | 925, 4365 |
| PciI | ACATGT | 1 cut(s) | 1173 |
| PciSI | GCTCTTC | 1 cut(s) | 2214 |
| PctI | GAATGC | 5 cut(s) | 360, 705, 3220, 3429, 3576 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1002, 1014, 3576, 4194 |
| PfeI | GAWTC | 9 cut(s) | 133, 194, 1274, 1886, 2137, 2488, 2740, 3394, 4349 |
| PflFI | GACNNNGTC | 1 cut(s) | 1862 |
| Ppu21I | YACGTR | 1 cut(s) | 1160 |
| PscI | ACATGT | 1 cut(s) | 1173 |
| PshAI | GACNNNNGTC | 1 cut(s) | 782 |
| Psp1406I | AACGTT | 1 cut(s) | 712 |
| PspEI | GGTNACC | 1 cut(s) | 1864 |
| PspFI | CCCAGC | 3 cut(s) | 773, 2262, 2898 |
| PspN4I | GGNNCC | 5 cut(s) | 179, 2373, 4488, 4555, 4673 |
| PspOMI | GGGCCC | 1 cut(s) | 4671 |
| PstI | CTGCAG | 2 cut(s) | 2632, 4176 |
| PstNI | CAGNNNCTG | 2 cut(s) | 82, 911 |
| PsuI | RGATCY | 4 cut(s) | 2641, 2958, 3978, 4478 |
| PsyI | GACNNNGTC | 1 cut(s) | 1862 |
| PvuII | CAGCTG | 3 cut(s) | 689, 2497, 2845 |
| RsaI | GTAC | 7 cut(s) | 1172, 1325, 2248, 2346, 2378, 2698, 4736 |
| RsaNI | GTAC | 7 cut(s) | 1171, 1324, 2247, 2345, 2377, 2697, 4735 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1178, 1509, 1830, 3891 |
| SapI | GCTCTTC | 1 cut(s) | 2214 |
| SduI | GDGCHC | 5 cut(s) | 180, 2227, 3522, 3663, 4675 |
| SexAI | ACCWGGT | 1 cut(s) | 1860 |
| SfcI | CTRYAG | 7 cut(s) | 74, 444, 1557, 1987, 2628, 4172, 4584 |
| Sfr274I | CTCGAG | 1 cut(s) | 116 |
| SinI | GGWCC | 6 cut(s) | 189, 524, 2355, 2707, 4314, 4528 |
| SlaI | CTCGAG | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1178, 1509, 1830, 3891 |
| SmlI | CTYRAG | 7 cut(s) | 116, 528, 1196, 2014, 2908, 3610, 4399 |
| SmoI | CTYRAG | 7 cut(s) | 116, 528, 1196, 2014, 2908, 3610, 4399 |
| SpeI | ACTAGT | 1 cut(s) | 1208 |
| SseBI | AGGCCT | 2 cut(s) | 925, 4365 |
| SsiI | CCGC | 9 cut(s) | 144, 240, 269, 314, 1870, 2010, 2353, 2805, 4312 |
| SspI | AATATT | 3 cut(s) | 1353, 2548, 3096 |
| StuI | AGGCCT | 2 cut(s) | 925, 4365 |
| StyI | CCWWGG | 2 cut(s) | 4490, 4557 |
| TaaI | ACNGT | 7 cut(s) | 300, 1641, 2071, 2246, 3128, 3907, 4664 |
| TaiI | ACGT | 6 cut(s) | 715, 786, 954, 1162, 2924, 3023 |
| TaqI | TCGA | 8 cut(s) | 101, 117, 218, 402, 933, 1889, 2299, 4754 |
| TaqII | GACCGA | 1 cut(s) | 206 |
| TatI | WGTACW | 2 cut(s) | 1170, 2344 |
| TauI | GCSGC | 3 cut(s) | 147, 2013, 2807 |
| TfiI | GAWTC | 9 cut(s) | 133, 194, 1274, 1886, 2137, 2488, 2740, 3394, 4349 |
| TseFI | GTSAC | 5 cut(s) | 1864, 3544, 3704, 3893, 4571 |
| TseI | GCWGC | 9 cut(s) | 686, 1121, 1124, 1476, 1628, 2627, 2845, 3376, 3850 |
| Tsp45I | GTSAC | 5 cut(s) | 1864, 3544, 3704, 3893, 4571 |
| TspGWI | ACGGA | 8 cut(s) | 174, 1570, 1578, 1674, 2364, 3269, 4070, 4084 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1862 |
| Vha464I | CTTAAG | 1 cut(s) | 4399 |
| VpaK11BI | GGWCC | 6 cut(s) | 189, 524, 2355, 2707, 4314, 4528 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4637 |
| XbaI | TCTAGA | 1 cut(s) | 2104 |
| XceI | RCATGY | 1 cut(s) | 1177 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 488, 518, 4324 |
| XhoI | CTCGAG | 1 cut(s) | 116 |
| XmiI | GTMKAC | 2 cut(s) | 36, 1556 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1002, 1014, 3576, 4194 |
| Zsp2I | ATGCAT | 3 cut(s) | 1392, 1879, 4136 |