Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005867

Physical Location & Seq

Genomic Coordinates Forward (+)

64109759 .. 64110673

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0510400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGAGGGTCATCAGAAGGGCCTTCAGCCCTTAAACGTAAGCGCCAAGACTATAATTCTCAGTCAGACTCTCTGACAGAGCATGAGCGCAGAATCTATGATGCCATCCTCAGCAAGAAAGATATGGGCAATTACAAACAAGCCATTAAGCGAGAAACAAACCTCACTATGGTTCTGATAAACAAGTCCCTCAAAACACTTGAAGGCAAGAAAAAGATAAAAGAGGTTAAAGGGATCCAATCCAGGGCAAGGGGGGGATTGTACATGGCTGCAGAGTTTGAGCCCTCGAACGAGATAACTGGCGGCGCGTGGTATGAGAACGGGAACTTGAATAGCGAGTCTGTAAACGATATGAAAAGGAAGTGCGTGAGGTTCATAAAAGAGCACGAAGTTGCTACGTTGAAAGAGATTTTAGCAGAAGTCGGAACTACAAGGATTTTAGATGCTAAATTAGACCCCAAGGACATGAAGGAGCTTCTGGAGGCTTTGGTTTTGGACAATGAGGTCATGAAGGCTGGGGAAGACAGTTATAAGTGCTGCAAGAGAAGTAGTACTGGGGAACCAAAATTGGCATCCATGGCTGTGATTCCATGCGGAGTCTGTCCGAGGAAAAATCATTGTACCCCAGATGGCATTATTTCCCCGGCCATCTGCGAATACTTCAAGAAATGGTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006810 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009826 GO:0009914 GO:0009926 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010101 GO:0010102 GO:0010229 GO:0010311 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048281 GO:0048364 GO:0048367 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

E3_UbLigase_R4 ZZ

Protein Analysis

227

Amino Acids

25.57

Weight (kDa)

8.94

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	18 - 131	1.1e-26	RNA polymerase Rpc34 subunit
RNA_pol_Rpc34	PF05158	131 - 226	4.1e-10	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02260 AT3G02260 AT3G02260 AT3G02260
fragaria_vesca	FvH4_6g46320 FvH4_6g46320
malus_domestica	MD09G1075600.v1.1 MD17G1066300.v1.1
prunus_persica	Prupe.3G248400_v2.0.a1 Prupe.3G248400_v2.0.a1 Prupe.3G248400_v2.0.a1
pyrus_communis	pycom09g00280 pycom09g00290 pycom09g00300 pycom17g06650 pycom17g06660 pycom17g06670 pycom17g06680
rosa_chinensis	RchiOBHm_Chr2g0164791
rosa_laevigata	RLG00000021489
rosa_multiflora	Rmu_sc0000946.1_g000029
rosa_roxburghii	Rroxscaffold_2G00086300
rosa_rugosa	Rorug02G0510400
rosa_samantha	Rh2AG578500 Rh2BG589800 Rh2CG560300 Rh2DG600000
rosa_wichuraiana	Rw2G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AasI	GACNNNNNNGTC	1 cut(s)	503
AccII	CGCG	1 cut(s)	308
AciI	CCGC	2 cut(s)	303, 594
AclWI	GGATC	2 cut(s)	229, 242
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	3 cut(s)	263, 553, 622
AfiI	CCNNNNNNNGG	3 cut(s)	169, 244, 249
AgsI	TTSAA	4 cut(s)	203, 331, 403, 664
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw21I	GWGCWC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	229, 242
AoxI	GGCC	2 cut(s)	20, 645
ApeKI	GCWGC	2 cut(s)	269, 537
AspLEI	GCGC	3 cut(s)	45, 90, 308
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	644
BamHI	GGATCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	256, 524
BccI	CCATC	3 cut(s)	113, 623, 656
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	3 cut(s)	270, 304, 538
BlsI	GCNGC	3 cut(s)	271, 305, 539
BmcAI	AGTACT	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	244, 644
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	236, 561
BmrFI	CCNGG	2 cut(s)	244, 644
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	91, 433, 581
BmuI	ACTGGG	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	243, 459, 576, 605, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 244, 249
Bse1I	ACTGG	2 cut(s)	304, 559
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	5 cut(s)	243, 459, 576, 605, 642
BseGI	GGATG	2 cut(s)	105, 572
BseLI	CCNNNNNNNGG	3 cut(s)	169, 244, 249
BseMII	CTCAG	2 cut(s)	74, 124
BseNI	ACTGG	2 cut(s)	304, 559
BseXI	GCAGC	2 cut(s)	256, 524
BseYI	CCCAGC	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	22, 647
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	3 cut(s)	169, 244, 249
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	22, 647
Bsp1286I	GDGCHC	2 cut(s)	285, 387
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	2 cut(s)	303, 594
BspANI	GGCC	2 cut(s)	22, 647
BspCNI	CTCAG	2 cut(s)	73, 123
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	236, 561
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	2 cut(s)	229, 242
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	304, 559
BssECI	CCNNGG	5 cut(s)	243, 459, 576, 605, 642
BssMI	GATC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	459, 576
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	60, 110
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	105, 572
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	3 cut(s)	45, 90, 308
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	242, 642
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	256, 524
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	22, 647
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	105, 572
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	3 cut(s)	45, 90, 308
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	262, 552, 621
CviAII	CATG	6 cut(s)	83, 265, 466, 508, 577, 591
CviQI	GTAC	3 cut(s)	262, 552, 621
DdeI	CTNAG	2 cut(s)	60, 110
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	459, 576
Eco24I	GRGCYC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	459, 576
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	459, 576
FaeI	CATG	6 cut(s)	86, 268, 469, 511, 580, 594
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	6 cut(s)	82, 264, 465, 507, 576, 590
Fnu4HI	GCNGC	3 cut(s)	270, 304, 538
FokI	GGATG	2 cut(s)	92, 559
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	270, 304, 538
GlaI	GCGC	3 cut(s)	44, 89, 307
GluI	GCNGC	3 cut(s)	270, 304, 538
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	22, 647
HapII	CCGG	1 cut(s)	644
HhaI	GCGC	3 cut(s)	45, 90, 308
Hin1II	CATG	6 cut(s)	86, 268, 469, 511, 580, 594
Hin6I	GCGC	3 cut(s)	43, 88, 306
HinP1I	GCGC	3 cut(s)	43, 88, 306
HinfI	GANTC	5 cut(s)	68, 93, 338, 586, 597
HpaII	CCGG	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	7 cut(s)	16, 67, 75, 177, 425, 606, 683
Hpy188III	TCNNGA	3 cut(s)	479, 508, 664
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	5 cut(s)	11, 33, 197, 463, 505
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	2 cut(s)	37, 398
HpyCH4V	TGCA	2 cut(s)	272, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	2 cut(s)	60, 110
HpySE526I	ACGT	2 cut(s)	37, 398
Hsp92II	CATG	6 cut(s)	86, 268, 469, 511, 580, 594
HspAI	GCGC	3 cut(s)	43, 88, 306
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	8 cut(s)	229, 256, 285, 464, 501, 540, 639, 657
Lsp1109I	GCAGC	2 cut(s)	256, 524
LweI	GCATC	3 cut(s)	91, 433, 581
MaeII	ACGT	2 cut(s)	37, 398
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	533
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	285, 387
MluCI	AATT	4 cut(s)	55, 130, 449, 566
MlyI	GAGTC	3 cut(s)	62, 347, 606
MmeI	TCCRAC	2 cut(s)	403, 654
MnlI	CCTC	9 cut(s)	119, 173, 200, 217, 295, 363, 475, 496, 600
MseI	TTAA	3 cut(s)	33, 147, 228
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	244, 644
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	6 cut(s)	86, 268, 469, 511, 580, 594
NlaIV	GGNNCC	2 cut(s)	236, 561
PagI	TCATGA	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	93, 586
PkrI	GCNGC	3 cut(s)	271, 305, 539
PleI	GAGTC	3 cut(s)	62, 346, 605
PpsI	GAGTC	3 cut(s)	62, 346, 605
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	236, 561
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	3 cut(s)	263, 553, 622
RsaNI	GTAC	3 cut(s)	262, 552, 621
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	33, 147, 228
SatI	GCNGC	3 cut(s)	270, 304, 538
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	3 cut(s)	62, 347, 606
ScrFI	CCNGG	2 cut(s)	244, 644
SduI	GDGCHC	2 cut(s)	285, 387
SetI	ASST	7 cut(s)	40, 165, 228, 374, 401, 477, 507
SfaNI	GCATC	3 cut(s)	91, 433, 581
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	4 cut(s)	55, 130, 449, 566
SsiI	CCGC	2 cut(s)	303, 594
StyD4I	CCNGG	2 cut(s)	242, 642
StyI	CCWWGG	2 cut(s)	459, 576
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	2 cut(s)	40, 401
TaqI	TCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	55, 130, 449, 566
TatI	WGTACW	2 cut(s)	261, 551
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	93, 586
Tru1I	TTAA	3 cut(s)	33, 147, 228
Tru9I	TTAA	3 cut(s)	33, 147, 228
TseI	GCWGC	2 cut(s)	269, 537
TspDTI	ATGAA	4 cut(s)	364, 368, 482, 524
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.