Auxin transport protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02260 AT3G02260 AT3G02260 AT3G02260 |
| fragaria_vesca | FvH4_6g46320 FvH4_6g46320 |
| malus_domestica | MD09G1075600.v1.1 MD17G1066300.v1.1 |
| prunus_persica | Prupe.3G248400_v2.0.a1 Prupe.3G248400_v2.0.a1 Prupe.3G248400_v2.0.a1 |
| pyrus_communis | pycom09g00280 pycom09g00290 pycom09g00300 pycom17g06650 pycom17g06660 pycom17g06670 pycom17g06680 |
| rosa_chinensis | RchiOBHm_Chr2g0164791 |
| rosa_laevigata | RLG00000021489 |
| rosa_multiflora | Rmu_sc0000946.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00086300 |
| rosa_rugosa | Rorug02G0510400 |
| rosa_samantha | Rh2AG578500 Rh2BG589800 Rh2CG560300 Rh2DG600000 |
| rosa_wichuraiana | Rw2G048030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3927 |
| Acc36I | ACCTGC | 2 cut(s) | 3679, 4756 |
| Acc65I | GGTACC | 1 cut(s) | 3050 |
| AccB1I | GGYRCC | 3 cut(s) | 1513, 3050, 6412 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1244, 4117 |
| AccBSI | CCGCTC | 1 cut(s) | 6499 |
| AccI | GTMKAC | 5 cut(s) | 1234, 1265, 1891, 4456, 6351 |
| AccII | CGCG | 2 cut(s) | 1639, 3765 |
| AccIII | TCCGGA | 1 cut(s) | 1300 |
| AclI | AACGTT | 2 cut(s) | 1626, 6379 |
| AclWI | GGATC | 9 cut(s) | 107, 489, 968, 1347, 3034, 3699, 4045, 5364, 5947 |
| AcoI | YGGCCR | 4 cut(s) | 2748, 4254, 5124, 6217 |
| AcvI | CACGTG | 1 cut(s) | 5576 |
| AdeI | CACNNNGTG | 1 cut(s) | 4583 |
| AfeI | AGCGCT | 1 cut(s) | 4764 |
| AflII | CTTAAG | 2 cut(s) | 2180, 4673 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2499 |
| AhlI | ACTAGT | 2 cut(s) | 4162, 4598 |
| AjiI | CACGTC | 3 cut(s) | 4478, 5440, 5966 |
| AjnI | CCWGG | 7 cut(s) | 250, 620, 1848, 2260, 2450, 3237, 3939 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2087, 2119, 4865, 4897 |
| AleI | CACNNNNGTG | 2 cut(s) | 3259, 6165 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1111, 1143 |
| Alw21I | GWGCWC | 4 cut(s) | 271, 3403, 4588, 5329 |
| AlwI | GGATC | 9 cut(s) | 107, 489, 968, 1347, 3034, 3699, 4045, 5364, 5947 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 251, 2365, 4339, 5657 |
| Ama87I | CYCGRG | 2 cut(s) | 5188, 6420 |
| Aor13HI | TCCGGA | 1 cut(s) | 1300 |
| Aor51HI | AGCGCT | 1 cut(s) | 4764 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5950, 5982 |
| AseI | ATTAAT | 3 cut(s) | 816, 1968, 2280 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 392, 1091, 5349 |
| Asp718I | GGTACC | 1 cut(s) | 3050 |
| AspLEI | GCGC | 4 cut(s) | 1639, 4765, 5210, 5573 |
| AspS9I | GGNCC | 9 cut(s) | 248, 2264, 2518, 2603, 2631, 4076, 5185, 5502, 5744 |
| AsuC2I | CCSGG | 4 cut(s) | 2381, 5189, 5190, 5884 |
| AsuII | TTCGAA | 2 cut(s) | 283, 4244 |
| AsuNHI | GCTAGC | 2 cut(s) | 5377, 5866 |
| AvaI | CYCGRG | 2 cut(s) | 5188, 6420 |
| AvaII | GGWCC | 6 cut(s) | 248, 2518, 2603, 4076, 5185, 5744 |
| BalI | TGGCCA | 3 cut(s) | 2750, 4256, 5126 |
| BanI | GGYRCC | 3 cut(s) | 1513, 3050, 6412 |
| BanII | GRGCYC | 1 cut(s) | 5329 |
| BauI | CACGAG | 2 cut(s) | 2616, 2754 |
| BbrPI | CACGTG | 1 cut(s) | 5576 |
| BbsI | GAAGAC | 5 cut(s) | 3104, 3218, 3788, 5442, 5825 |
| Bbv12I | GWGCWC | 4 cut(s) | 271, 3403, 4588, 5329 |
| BbvCI | CCTCAGC | 1 cut(s) | 4436 |
| BceAI | ACGGC | 3 cut(s) | 2618, 4485, 5814 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 341, 375 |
| BciT130I | CCWGG | 7 cut(s) | 252, 622, 1850, 2262, 2452, 3239, 3941 |
| BciVI | GTATCC | 2 cut(s) | 3079, 6454 |
| BclI | TGATCA | 1 cut(s) | 5977 |
| BcnI | CCSGG | 4 cut(s) | 2381, 5189, 5190, 5884 |
| BcuI | ACTAGT | 2 cut(s) | 4162, 4598 |
| BfmI | CTRYAG | 6 cut(s) | 750, 1498, 2011, 2112, 2513, 6255 |
| BfoI | RGCGCY | 2 cut(s) | 4766, 5211 |
| BfrI | CTTAAG | 2 cut(s) | 2180, 4673 |
| BfuAI | ACCTGC | 2 cut(s) | 3679, 4756 |
| BfuI | GTATCC | 2 cut(s) | 3079, 6454 |
| BglII | AGATCT | 1 cut(s) | 465 |
| BlpI | GCTNAGC | 2 cut(s) | 2865, 5464 |
| BmcAI | AGTACT | 1 cut(s) | 779 |
| Bme18I | GGWCC | 6 cut(s) | 248, 2518, 2603, 4076, 5185, 5744 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2499 |
| BmeT110I | CYCGRG | 2 cut(s) | 5188, 6420 |
| BmgBI | CACGTC | 3 cut(s) | 4478, 5440, 5966 |
| BmgT120I | GGNCC | 9 cut(s) | 248, 2264, 2518, 2603, 2631, 4076, 5185, 5502, 5744 |
| BmiI | GGNNCC | 8 cut(s) | 1515, 3052, 3693, 4503, 5186, 5187, 5828, 6414 |
| BmrI | ACTGGG | 3 cut(s) | 450, 1602, 3091 |
| BmtI | GCTAGC | 2 cut(s) | 5381, 5870 |
| BmuI | ACTGGG | 3 cut(s) | 450, 1602, 3091 |
| BpiI | GAAGAC | 5 cut(s) | 3104, 3218, 3788, 5442, 5825 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 4186, 4218, 4525, 4557, 4642, 4674 |
| BpmI | CTGGAG | 6 cut(s) | 1491, 1832, 3962, 4667, 4819, 5917 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4436 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2865, 5464 |
| Bpu14I | TTCGAA | 2 cut(s) | 283, 4244 |
| BpuEI | CTTGAG | 7 cut(s) | 616, 1496, 3570, 3624, 3764, 4188, 4982 |
| BpuMI | CCSGG | 4 cut(s) | 2381, 5189, 5190, 5884 |
| Bsa29I | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| BsaAI | YACGTR | 3 cut(s) | 2709, 5576, 6659 |
| BsaBI | GATNNNNATC | 3 cut(s) | 498, 1055, 3804 |
| BsaI | GGTCTC | 3 cut(s) | 1728, 2257, 2460 |
| BsaWI | WCCGGW | 1 cut(s) | 1300 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3610, 3640 |
| Bse118I | RCCGGY | 2 cut(s) | 4812, 6219 |
| Bse3DI | GCAATG | 6 cut(s) | 1868, 1880, 1961, 2768, 3604, 4761 |
| Bse8I | GATNNNNATC | 3 cut(s) | 498, 1055, 3804 |
| BseAI | TCCGGA | 1 cut(s) | 1300 |
| BseBI | CCWGG | 7 cut(s) | 252, 622, 1850, 2262, 2452, 3239, 3941 |
| BseCI | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| BseJI | GATNNNNATC | 3 cut(s) | 498, 1055, 3804 |
| BseMI | GCAATG | 6 cut(s) | 1868, 1880, 1961, 2768, 3604, 4761 |
| BseRI | GAGGAG | 6 cut(s) | 2922, 3923, 4382, 5288, 5465, 5468 |
| BseYI | CCCAGC | 5 cut(s) | 129, 1288, 3313, 4169, 4860 |
| BsgI | GTGCAG | 9 cut(s) | 1158, 1969, 2258, 3797, 5064, 5574, 5919, 6318, 6681 |
| Bsh1236I | CGCG | 2 cut(s) | 1639, 3765 |
| Bsh1285I | CGRYCG | 2 cut(s) | 4813, 5883 |
| BshNI | GGYRCC | 3 cut(s) | 1513, 3050, 6412 |
| BshVI | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| BsiEI | CGRYCG | 2 cut(s) | 4813, 5883 |
| BsiHKAI | GWGCWC | 4 cut(s) | 271, 3403, 4588, 5329 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5188, 6420 |
| BsiSI | CCGG | 7 cut(s) | 397, 1301, 2380, 4813, 5189, 5883, 6220 |
| BsmBI | CGTCTC | 2 cut(s) | 4468, 4601 |
| BsmI | GAATGC | 4 cut(s) | 1942, 2645, 4252, 5370 |
| Bso31I | GGTCTC | 3 cut(s) | 1728, 2257, 2460 |
| BsoBI | CYCGRG | 2 cut(s) | 5188, 6420 |
| Bsp119I | TTCGAA | 2 cut(s) | 283, 4244 |
| Bsp1286I | GDGCHC | 4 cut(s) | 271, 3403, 4588, 5329 |
| Bsp13I | TCCGGA | 1 cut(s) | 1300 |
| Bsp1407I | TGTACA | 1 cut(s) | 405 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2865, 5464 |
| Bsp19I | CCATGG | 4 cut(s) | 2733, 3901, 4251, 4497 |
| BspDI | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| BspEI | TCCGGA | 1 cut(s) | 1300 |
| BspFNI | CGCG | 2 cut(s) | 1639, 3765 |
| BspHI | TCATGA | 5 cut(s) | 970, 1630, 1815, 5949, 6142 |
| BspLI | GGNNCC | 8 cut(s) | 1515, 3052, 3693, 4503, 5186, 5187, 5828, 6414 |
| BspMAI | CTGCAG | 2 cut(s) | 754, 1502 |
| BspMI | ACCTGC | 2 cut(s) | 3679, 4756 |
| BspOI | GCTAGC | 2 cut(s) | 5381, 5870 |
| BspPI | GGATC | 9 cut(s) | 107, 489, 968, 1347, 3034, 3699, 4045, 5364, 5947 |
| BspQI | GCTCTTC | 1 cut(s) | 2301 |
| BspT104I | TTCGAA | 2 cut(s) | 283, 4244 |
| BspT107I | GGYRCC | 3 cut(s) | 1513, 3050, 6412 |
| BspTI | CTTAAG | 2 cut(s) | 2180, 4673 |
| BspTNI | GGTCTC | 3 cut(s) | 1728, 2257, 2460 |
| BsrBI | CCGCTC | 1 cut(s) | 6499 |
| BsrDI | GCAATG | 6 cut(s) | 1868, 1880, 1961, 2768, 3604, 4761 |
| BsrFI | RCCGGY | 2 cut(s) | 4812, 6219 |
| BsrGI | TGTACA | 1 cut(s) | 405 |
| BssAI | RCCGGY | 2 cut(s) | 4812, 6219 |
| BssNAI | GTATAC | 1 cut(s) | 1266 |
| BssSI | CACGAG | 2 cut(s) | 2616, 2754 |
| BssT1I | CCWWGG | 7 cut(s) | 74, 95, 411, 2733, 3901, 4251, 4497 |
| Bst1107I | GTATAC | 1 cut(s) | 1266 |
| Bst2BI | CACGAG | 2 cut(s) | 2616, 2754 |
| Bst2UI | CCWGG | 7 cut(s) | 252, 622, 1850, 2262, 2452, 3239, 3941 |
| BstAFI | CTTAAG | 2 cut(s) | 2180, 4673 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1956, 5478, 5657, 6671 |
| BstAUI | TGTACA | 1 cut(s) | 405 |
| BstBAI | YACGTR | 3 cut(s) | 2709, 5576, 6659 |
| BstBI | TTCGAA | 2 cut(s) | 283, 4244 |
| BstDSI | CCRYGG | 4 cut(s) | 2733, 3901, 4251, 4497 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2967, 5739 |
| BstFNI | CGCG | 2 cut(s) | 1639, 3765 |
| BstH2I | RGCGCY | 2 cut(s) | 4766, 5211 |
| BstHHI | GCGC | 4 cut(s) | 1639, 4765, 5210, 5573 |
| BstMCI | CGRYCG | 2 cut(s) | 4813, 5883 |
| BstNI | CCWGG | 7 cut(s) | 252, 622, 1850, 2262, 2452, 3239, 3941 |
| BstSFI | CTRYAG | 6 cut(s) | 750, 1498, 2011, 2112, 2513, 6255 |
| BstSNI | TACGTA | 1 cut(s) | 2709 |
| BstUI | CGCG | 2 cut(s) | 1639, 3765 |
| BstV2I | GAAGAC | 5 cut(s) | 3104, 3218, 3788, 5442, 5825 |
| BstX2I | RGATCY | 5 cut(s) | 465, 481, 3026, 4037, 5356 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 584, 2443 |
| BstYI | RGATCY | 5 cut(s) | 465, 481, 3026, 4037, 5356 |
| BstZ17I | GTATAC | 1 cut(s) | 1266 |
| Bsu15I | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| BsuI | GTATCC | 2 cut(s) | 3079, 6454 |
| BsuTUI | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| BtgI | CCRYGG | 4 cut(s) | 2733, 3901, 4251, 4497 |
| BtgZI | GCGATG | 2 cut(s) | 2711, 4840 |
| BtrI | CACGTC | 3 cut(s) | 4478, 5440, 5966 |
| BtsI | GCAGTG | 3 cut(s) | 1333, 2363, 2676 |
| BveI | ACCTGC | 2 cut(s) | 3679, 4756 |
| CaiI | CAGNNNCTG | 4 cut(s) | 251, 2365, 4339, 5657 |
| CciI | TCATGA | 5 cut(s) | 970, 1630, 1815, 5949, 6142 |
| CfoI | GCGC | 4 cut(s) | 1639, 4765, 5210, 5573 |
| Cfr10I | RCCGGY | 2 cut(s) | 4812, 6219 |
| Cfr13I | GGNCC | 9 cut(s) | 248, 2264, 2518, 2603, 2631, 4076, 5185, 5502, 5744 |
| Cfr9I | CCCGGG | 1 cut(s) | 5188 |
| ClaI | ATCGAT | 3 cut(s) | 102, 1342, 6669 |
| CseI | GACGC | 1 cut(s) | 4325 |
| CsiI | ACCWGGT | 1 cut(s) | 250 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 60, 95, 1987, 2022, 5070, 5105 |
| DraI | TTTAAA | 1 cut(s) | 5035 |
| DraIII | CACNNNGTG | 1 cut(s) | 4583 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3927 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2499 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3927 |
| EaeI | YGGCCR | 4 cut(s) | 2748, 4254, 5124, 6217 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2499 |
| EciI | GGCGGA | 3 cut(s) | 3051, 4296, 5931 |
| Ecl136II | GAGCTC | 1 cut(s) | 5327 |
| Eco105I | TACGTA | 1 cut(s) | 2709 |
| Eco130I | CCWWGG | 7 cut(s) | 74, 95, 411, 2733, 3901, 4251, 4497 |
| Eco147I | AGGCCT | 1 cut(s) | 6058 |
| Eco24I | GRGCYC | 1 cut(s) | 5329 |
| Eco31I | GGTCTC | 3 cut(s) | 1728, 2257, 2460 |
| Eco32I | GATATC | 2 cut(s) | 355, 500 |
| Eco47I | GGWCC | 6 cut(s) | 248, 2518, 2603, 4076, 5185, 5744 |
| Eco47III | AGCGCT | 1 cut(s) | 4764 |
| Eco53kI | GAGCTC | 1 cut(s) | 5327 |
| Eco72I | CACGTG | 1 cut(s) | 5576 |
| Eco88I | CYCGRG | 2 cut(s) | 5188, 6420 |
| EcoICRI | GAGCTC | 1 cut(s) | 5327 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2967, 5739 |
| EcoO109I | RGGNCCY | 4 cut(s) | 248, 2518, 2603, 5185 |
| EcoRI | GAATTC | 4 cut(s) | 943, 1120, 3233, 6121 |
| EcoRII | CCWGG | 7 cut(s) | 250, 620, 1848, 2260, 2450, 3237, 3939 |
| EcoRV | GATATC | 2 cut(s) | 355, 500 |
| EcoT14I | CCWWGG | 7 cut(s) | 74, 95, 411, 2733, 3901, 4251, 4497 |
| EcoT22I | ATGCAT | 3 cut(s) | 1373, 4401, 5474 |
| EcoT38I | GRGCYC | 1 cut(s) | 5329 |
| ErhI | CCWWGG | 7 cut(s) | 74, 95, 411, 2733, 3901, 4251, 4497 |
| Esp3I | CGTCTC | 2 cut(s) | 4468, 4601 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 3281, 3313, 4225, 4257, 4503, 4535, 6486, 6518 |
| FauI | CCCGC | 3 cut(s) | 668, 1433, 6667 |
| FauNDI | CATATG | 3 cut(s) | 331, 697, 4738 |
| FbaI | TGATCA | 1 cut(s) | 5977 |
| FblI | GTMKAC | 5 cut(s) | 1234, 1265, 1891, 4456, 6351 |
| FriOI | GRGCYC | 1 cut(s) | 5329 |
| GlaI | GCGC | 4 cut(s) | 1638, 4764, 5209, 5572 |
| GsaI | CCCAGC | 5 cut(s) | 133, 1292, 3317, 4173, 4864 |
| GsuI | CTGGAG | 6 cut(s) | 1491, 1832, 3962, 4667, 4819, 5917 |
| HaeII | RGCGCY | 2 cut(s) | 4766, 5211 |
| HapII | CCGG | 7 cut(s) | 397, 1301, 2380, 4813, 5189, 5883, 6220 |
| HgaI | GACGC | 1 cut(s) | 4325 |
| HhaI | GCGC | 4 cut(s) | 1639, 4765, 5210, 5573 |
| Hin6I | GCGC | 4 cut(s) | 1637, 4763, 5208, 5571 |
| HinP1I | GCGC | 4 cut(s) | 1637, 4763, 5208, 5571 |
| HincII | GTYRAC | 5 cut(s) | 1892, 2419, 5112, 5782, 5844 |
| HindII | GTYRAC | 5 cut(s) | 1892, 2419, 5112, 5782, 5844 |
| HindIII | AAGCTT | 3 cut(s) | 3659, 6466, 6474 |
| HpaI | GTTAAC | 1 cut(s) | 2419 |
| HpaII | CCGG | 7 cut(s) | 397, 1301, 2380, 4813, 5189, 5883, 6220 |
| HspAI | GCGC | 4 cut(s) | 1637, 4763, 5208, 5571 |
| KflI | GGGWCCC | 1 cut(s) | 5185 |
| Kpn2I | TCCGGA | 1 cut(s) | 1300 |
| KpnI | GGTACC | 1 cut(s) | 3054 |
| Ksp22I | TGATCA | 1 cut(s) | 5977 |
| KspAI | GTTAAC | 1 cut(s) | 2419 |
| LguI | GCTCTTC | 1 cut(s) | 2301 |
| MabI | ACCWGGT | 1 cut(s) | 250 |
| MbiI | CCGCTC | 1 cut(s) | 6499 |
| MfeI | CAATTG | 1 cut(s) | 1924 |
| MflI | RGATCY | 5 cut(s) | 465, 481, 3026, 4037, 5356 |
| MhlI | GDGCHC | 4 cut(s) | 271, 3403, 4588, 5329 |
| MlsI | TGGCCA | 3 cut(s) | 2750, 4256, 5126 |
| MluNI | TGGCCA | 3 cut(s) | 2750, 4256, 5126 |
| MmeI | TCCRAC | 5 cut(s) | 363, 3714, 4098, 4383, 6400 |
| Mox20I | TGGCCA | 3 cut(s) | 2750, 4256, 5126 |
| Mph1103I | ATGCAT | 3 cut(s) | 1373, 4401, 5474 |
| MroI | TCCGGA | 1 cut(s) | 1300 |
| MroXI | GAANNNNTTC | 3 cut(s) | 392, 1091, 5349 |
| MscI | TGGCCA | 3 cut(s) | 2750, 4256, 5126 |
| Msp20I | TGGCCA | 3 cut(s) | 2750, 4256, 5126 |
| MspA1I | CMGCKG | 6 cut(s) | 133, 299, 2836, 4508, 6165, 6227 |
| MspCI | CTTAAG | 2 cut(s) | 2180, 4673 |
| MspI | CCGG | 7 cut(s) | 397, 1301, 2380, 4813, 5189, 5883, 6220 |
| MunI | CAATTG | 1 cut(s) | 1924 |
| Mva1269I | GAATGC | 4 cut(s) | 1942, 2645, 4252, 5370 |
| MvaI | CCWGG | 7 cut(s) | 252, 622, 1850, 2262, 2452, 3239, 3941 |
| MvnI | CGCG | 2 cut(s) | 1639, 3765 |
| NciI | CCSGG | 4 cut(s) | 2381, 5189, 5190, 5884 |
| NcoI | CCATGG | 4 cut(s) | 2733, 3901, 4251, 4497 |
| NdeI | CATATG | 3 cut(s) | 331, 697, 4738 |
| NheI | GCTAGC | 2 cut(s) | 5377, 5866 |
| NlaIV | GGNNCC | 8 cut(s) | 1515, 3052, 3693, 4503, 5186, 5187, 5828, 6414 |
| NmeAIII | GCCGAG | 1 cut(s) | 5507 |
| NmuCI | GTSAC | 8 cut(s) | 1207, 1615, 1897, 2671, 4318, 4594, 4937, 5966 |
| NsiI | ATGCAT | 3 cut(s) | 1373, 4401, 5474 |
| NspV | TTCGAA | 2 cut(s) | 283, 4244 |
| OliI | CACNNNNGTG | 2 cut(s) | 3259, 6165 |
| PaeI | GCATGC | 3 cut(s) | 147, 3625, 5472 |
| PagI | TCATGA | 5 cut(s) | 970, 1630, 1815, 5949, 6142 |
| PceI | AGGCCT | 1 cut(s) | 6058 |
| PciSI | GCTCTTC | 1 cut(s) | 2301 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1888, 4333 |
| PctI | GAATGC | 4 cut(s) | 1942, 2645, 4252, 5370 |
| PdmI | GAANNNNTTC | 3 cut(s) | 392, 1091, 5349 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1244, 4117 |
| PfoI | TCCNGGA | 1 cut(s) | 3939 |
| PmaCI | CACGTG | 1 cut(s) | 5576 |
| PmlI | CACGTG | 1 cut(s) | 5576 |
| Ppu21I | YACGTR | 3 cut(s) | 2709, 5576, 6659 |
| PpuMI | RGGWCCY | 4 cut(s) | 248, 2518, 2603, 5185 |
| PshBI | ATTAAT | 3 cut(s) | 816, 1968, 2280 |
| Psp124BI | GAGCTC | 1 cut(s) | 5329 |
| Psp1406I | AACGTT | 2 cut(s) | 1626, 6379 |
| Psp5II | RGGWCCY | 4 cut(s) | 248, 2518, 2603, 5185 |
| Psp6I | CCWGG | 7 cut(s) | 250, 620, 1848, 2260, 2450, 3237, 3939 |
| PspCI | CACGTG | 1 cut(s) | 5576 |
| PspFI | CCCAGC | 5 cut(s) | 129, 1288, 3313, 4169, 4860 |
| PspGI | CCWGG | 7 cut(s) | 250, 620, 1848, 2260, 2450, 3237, 3939 |
| PspN4I | GGNNCC | 8 cut(s) | 1515, 3052, 3693, 4503, 5186, 5187, 5828, 6414 |
| PspPI | GGNCC | 9 cut(s) | 248, 2264, 2518, 2603, 2631, 4076, 5185, 5502, 5744 |
| PspPPI | RGGWCCY | 4 cut(s) | 248, 2518, 2603, 5185 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1658, 1690 |
| PstI | CTGCAG | 2 cut(s) | 754, 1502 |
| PstNI | CAGNNNCTG | 4 cut(s) | 251, 2365, 4339, 5657 |
| PsuI | RGATCY | 5 cut(s) | 465, 481, 3026, 4037, 5356 |
| PvuII | CAGCTG | 5 cut(s) | 133, 299, 2836, 4508, 6227 |
| SacI | GAGCTC | 1 cut(s) | 5329 |
| SalI | GTCGAC | 1 cut(s) | 1890 |
| SapI | GCTCTTC | 1 cut(s) | 2301 |
| Sau96I | GGNCC | 9 cut(s) | 248, 2264, 2518, 2603, 2631, 4076, 5185, 5502, 5744 |
| ScaI | AGTACT | 1 cut(s) | 779 |
| SduI | GDGCHC | 4 cut(s) | 271, 3403, 4588, 5329 |
| SexAI | ACCWGGT | 1 cut(s) | 250 |
| SfcI | CTRYAG | 6 cut(s) | 750, 1498, 2011, 2112, 2513, 6255 |
| SfuI | TTCGAA | 2 cut(s) | 283, 4244 |
| SinI | GGWCC | 6 cut(s) | 248, 2518, 2603, 4076, 5185, 5744 |
| SmaI | CCCGGG | 1 cut(s) | 5190 |
| SmlI | CTYRAG | 9 cut(s) | 631, 1475, 2180, 3585, 3639, 3743, 4203, 4673, 4961 |
| SmoI | CTYRAG | 9 cut(s) | 631, 1475, 2180, 3585, 3639, 3743, 4203, 4673, 4961 |
| SnaBI | TACGTA | 1 cut(s) | 2709 |
| SpeI | ACTAGT | 2 cut(s) | 4162, 4598 |
| SphI | GCATGC | 3 cut(s) | 147, 3625, 5472 |
| SseBI | AGGCCT | 1 cut(s) | 6058 |
| SspI | AATATT | 1 cut(s) | 3491 |
| SstI | GAGCTC | 1 cut(s) | 5329 |
| StuI | AGGCCT | 1 cut(s) | 6058 |
| StyI | CCWWGG | 7 cut(s) | 74, 95, 411, 2733, 3901, 4251, 4497 |
| TaqII | GACCGA | 1 cut(s) | 2690 |
| TatI | WGTACW | 5 cut(s) | 405, 777, 2927, 3174, 3407 |
| TauI | GCSGC | 4 cut(s) | 1962, 3768, 6413, 6502 |
| TseFI | GTSAC | 8 cut(s) | 1207, 1615, 1897, 2671, 4318, 4594, 4937, 5966 |
| Tsp45I | GTSAC | 8 cut(s) | 1207, 1615, 1897, 2671, 4318, 4594, 4937, 5966 |
| TspGWI | ACGGA | 4 cut(s) | 1022, 2588, 3344, 6319 |
| TspMI | CCCGGG | 1 cut(s) | 5188 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1244, 4117 |
| Vha464I | CTTAAG | 2 cut(s) | 2180, 4673 |
| VpaK11BI | GGWCC | 6 cut(s) | 248, 2518, 2603, 4076, 5185, 5744 |
| VspI | ATTAAT | 3 cut(s) | 816, 1968, 2280 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2967, 5739 |
| XbaI | TCTAGA | 1 cut(s) | 3610 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5679 |
| XmaI | CCCGGG | 1 cut(s) | 5188 |
| XmiI | GTMKAC | 5 cut(s) | 1234, 1265, 1891, 4456, 6351 |
| XmnI | GAANNNNTTC | 3 cut(s) | 392, 1091, 5349 |
| ZrmI | AGTACT | 1 cut(s) | 779 |
| Zsp2I | ATGCAT | 3 cut(s) | 1373, 4401, 5474 |