Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011587

Physical Location & Seq

Genomic Coordinates Reverse (-)

1998317 .. 2000031

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGTCTGGCATGAGATCAGTGCAGGATCATTCCAATTCAATGAGGAGCAGATAGAGTCGCTATTTGGTTATAACGCTGCGGATAAAGCCAAAAATGATCGGAGGAAGGAAGCATCAGCCTTAGAACCTGCAGTCCAGTATATTCAAATTATCGACAGAAAGAAAGCACAAAATCTTGCAATTCTTCTACGAGCATTGAATTTGACAGCGGAAGAAGTTGCTGATGCCCTCCGAGAAGTTCCATGTTATGTTTTTCCAATTTTGATTCACAGGGGATATTGCTCAACTCTTCATCCTTTGTTGATTGAATCAGGTAATGAGCTTCCTGTGGAGTTCCTCCAAAACTTGTTGAGGATGGCACCAACTGCGGAAGAAGAATTGAAGCTTAGGTTATTCACAGGGGATATTGCTCAACTTGGTCATGCAGAGCGGTTCCTCAAAGCCATGGTTGACATACCATTTGCTTTTAAGCGCATGGAGTCACTGTTGTTCATGTGTTCCCTGCCAGAGGAGGTTTCTACCACTAAAGAGTCCTTCATAACTTTAGAGTCAAAGCAACCTTCAATGTTTCTGTGTTATCTAACTATTCCTCTCCGTAAATGTCAGGTTGCTTGCAACAAACTCAGAAAGAGCAGGCTATTCCTAAAACTTTTAGAAGCGGTTCTCAAAACTGGAAACCGTATGAATGATGGCACCTACCGTGGTGGTGCGCAGGCATTTAGGCTTGATACGCTTTTGAAACTCGCTGATGTAAAAGGCACTGATGGCAAAACCACACTCTTGCACTTTGTAGTTCAAGAGATCATGCGTTCTGAGGGTCGAAGAGCTATTCGCACAGCCAGAGAAAGCCGGAGCATGTCCAACTTGAGCACAGAGGACATAGCTGAGGATGTCAATGAGGACTCAGAGGAGCACTTGTGTAACCTCGGTCTTCAGGTTGTCTCAGGTTTAAGCGATGAACTTGAAGATGTGAAAAAGGCTGCACTTGTAGATGCTGATGGCCTAACGTCGACAGTTGCAAATCTTGGCCAGTCCTTAGTAAAAAATCGAGATTTTATAAATGTTGAGATGAAGAATATGGACGAAGATAGTGAATTCCAACGGACACTAGCCAGTTTTGTGGAGCGGGCGGAATCTGATATTACATGGCTGTTGGAAGAAGAAAAGAGGGTAACTGCTCTTGTGAAGAGCACAGCGGATTACTTCCACGGGAACGCAGGGAGGGATGAAGGCATTCGCTTGTTTGCGATTGTACGAGATTTCTTGGTAATTCTAAACAAGGTATGCACAGAGGTCCGAAATTCAACGATGAAGGCGGCGAAGAATGCCAAGAAAGAGGTCCAGGCCCCAACGGCGACAGAAACAACTCCAGAAAATCGTCAAACACCACCTACAGATATGCGTCAACGACTATTTCCAGCAATTGCAGAACGGCGGGTGGAGGAGGGTTTCAGTTCAGATGATGAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

491

Amino Acids

55.27

Weight (kDa)

5.38

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FH2	PF02181	1 - 183	3.1e-34	Formin Homology 2 Domain
FH2	PF02181	194 - 423	1e-49	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43690 FvH4_6g43690 FvH4_6g43690
malus_domestica	MD09G1103500.v1.1 MD17G1091400.v1.1
prunus_persica	Prupe.3G222000_v2.0.a1
pyrus_communis	pycom09g02700 pycom17g08870
rosa_chinensis	RchiOBHm_Chr2g0160331
rosa_laevigata	RLG00000021212
rosa_multiflora	Rmu_co8515261.1_g000002
rosa_roxburghii	Rroxscaffold_2G00089860
rosa_rugosa	Rorug02G0482900 Rorug02G0483000 Rorug02G0483100
rosa_samantha	Rh2AG548200 Rh2BG561800 Rh2CG532600 Rh2DG570300
rosa_wichuraiana	Rw2G045370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	72, 1058
Acc16I	TGCGCA	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	2 cut(s)	358, 692
AccBSI	CCGCTC	2 cut(s)	430, 1126
AccI	GTMKAC	1 cut(s)	1010
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	3 cut(s)	199, 1094, 1300
AcuI	CTGAAG	1 cut(s)	917
AfaI	GTAC	1 cut(s)	1254
AfiI	CCNNNNNNNGG	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	1341
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	4 cut(s)	322, 385, 827, 884
AluI	AGCT	4 cut(s)	322, 385, 827, 884
Alw21I	GWGCWC	3 cut(s)	872, 915, 1193
Alw26I	GTCTC	2 cut(s)	946, 1460
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	3 cut(s)	1000, 1027, 1344
ApeKI	GCWGC	2 cut(s)	77, 980
ApoI	RAATTY	3 cut(s)	199, 1094, 1300
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
Asp700I	GAANNNNTTC	2 cut(s)	660, 1233
AspLEI	GCGC	2 cut(s)	474, 712
AspS9I	GGNCC	3 cut(s)	1294, 1339, 1345
AvaII	GGWCC	2 cut(s)	1294, 1339
BalI	TGGCCA	1 cut(s)	1029
BanI	GGYRCC	2 cut(s)	358, 692
BbsI	GAAGAC	1 cut(s)	923
Bbv12I	GWGCWC	3 cut(s)	872, 915, 1193
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	64, 967
BccI	CCATC	4 cut(s)	349, 683, 758, 992
BceAI	ACGGC	2 cut(s)	1368, 1448
BciT130I	CCWGG	1 cut(s)	1343
BcoDI	GTCTC	2 cut(s)	946, 1460
BfaI	CTAG	2 cut(s)	1109, 1471
BfmI	CTRYAG	2 cut(s)	129, 1392
BfuAI	ACCTGC	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	1352
BisI	GCNGC	3 cut(s)	78, 981, 1317
BlsI	GCNGC	3 cut(s)	79, 982, 1318
Bme1390I	CCNGG	1 cut(s)	1343
Bme18I	GGWCC	2 cut(s)	1294, 1339
BmgT120I	GGNCC	3 cut(s)	1294, 1339, 1345
BmiI	GGNNCC	4 cut(s)	360, 434, 694, 1347
BmrFI	CCNGG	1 cut(s)	1343
BmsI	GCATC	3 cut(s)	122, 214, 982
BpiI	GAAGAC	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	1353
Bpu10I	CCTNAGC	2 cut(s)	386, 885
BpuEI	CTTGAG	1 cut(s)	886
BsaI	GGTCTC	1 cut(s)	1460
BsaJI	CCNNGG	4 cut(s)	444, 700, 925, 1207
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 500, 902, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	4 cut(s)	136, 676, 1030, 1113
BseBI	CCWGG	1 cut(s)	1343
BseDI	CCNNGG	4 cut(s)	444, 700, 925, 1207
BseGI	GGATG	4 cut(s)	292, 360, 895, 1231
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	5 cut(s)	637, 804, 876, 918, 957
BseNI	ACTGG	4 cut(s)	136, 676, 1030, 1113
BseRI	GAGGAG	4 cut(s)	59, 524, 923, 1457
BseXI	GCAGC	2 cut(s)	64, 967
BsgI	GTGCAG	2 cut(s)	42, 966
BshFI	GGCC	3 cut(s)	1002, 1029, 1346
BshNI	GGYRCC	2 cut(s)	358, 692
BsiHKAI	GWGCWC	3 cut(s)	872, 915, 1193
BsiSI	CCGG	1 cut(s)	850
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	946, 1460
BsmI	GAATGC	2 cut(s)	1233, 1330
BsnI	GGCC	3 cut(s)	1002, 1029, 1346
Bso31I	GGTCTC	1 cut(s)	1460
Bsp1286I	GDGCHC	3 cut(s)	872, 915, 1193
Bsp143I	GATC	4 cut(s)	15, 26, 97, 801
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	3 cut(s)	1002, 1029, 1346
BspCNI	CTCAG	5 cut(s)	636, 805, 877, 917, 956
BspLI	GGNNCC	4 cut(s)	360, 434, 694, 1347
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	34
BspQI	GCTCTTC	2 cut(s)	817, 1181
BspT107I	GGYRCC	2 cut(s)	358, 692
BspTNI	GGTCTC	1 cut(s)	1460
BsrBI	CCGCTC	2 cut(s)	430, 1126
BsrI	ACTGG	4 cut(s)	136, 676, 1030, 1113
BssECI	CCNNGG	4 cut(s)	444, 700, 925, 1207
BssMI	GATC	4 cut(s)	15, 26, 97, 801
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	1343
Bst4CI	ACNGT	4 cut(s)	486, 680, 701, 1015
Bst6I	CTCTTC	3 cut(s)	294, 817, 1181
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	4 cut(s)	613, 635, 714, 1128
BstDEI	CTNAG	8 cut(s)	121, 386, 623, 813, 885, 904, 943, 1036
BstDSI	CCRYGG	3 cut(s)	444, 700, 1207
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	4 cut(s)	292, 360, 895, 1231
BstHHI	GCGC	2 cut(s)	474, 712
BstKTI	GATC	4 cut(s)	18, 29, 100, 804
BstMAI	GTCTC	2 cut(s)	946, 1460
BstMBI	GATC	4 cut(s)	15, 26, 97, 801
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 365, 730, 765, 1325, 1352
BstNI	CCWGG	1 cut(s)	1343
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	1 cut(s)	1341
BstSFI	CTRYAG	2 cut(s)	129, 1392
BstV1I	GCAGC	2 cut(s)	64, 967
BstV2I	GAAGAC	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	1120
BsuRI	GGCC	3 cut(s)	1002, 1029, 1346
BtgI	CCRYGG	3 cut(s)	444, 700, 1207
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	4 cut(s)	292, 360, 895, 1231
BtsIMutI	CAGTG	3 cut(s)	25, 482, 759
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	4 cut(s)	613, 635, 714, 1128
CfoI	GCGC	2 cut(s)	474, 712
Cfr13I	GGNCC	3 cut(s)	1294, 1339, 1345
CseI	GACGC	1 cut(s)	1391
Csp6I	GTAC	1 cut(s)	1253
CviAII	CATG	9 cut(s)	11, 243, 422, 445, 475, 493, 805, 856, 1146
CviQI	GTAC	1 cut(s)	1253
DdeI	CTNAG	8 cut(s)	121, 386, 623, 813, 885, 904, 943, 1036
DpnI	GATC	4 cut(s)	17, 28, 99, 803
DpnII	GATC	4 cut(s)	15, 26, 97, 801
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	3 cut(s)	294, 817, 1181
EarI	CTCTTC	3 cut(s)	294, 817, 1181
EciI	GGCGGA	1 cut(s)	1145
Eco130I	CCWWGG	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	1460
Eco47I	GGWCC	2 cut(s)	1294, 1339
Eco57I	CTGAAG	1 cut(s)	917
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	1345
EcoRI	GAATTC	1 cut(s)	1094
EcoRII	CCWGG	1 cut(s)	1341
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	9 cut(s)	14, 246, 425, 448, 478, 496, 808, 859, 1149
FatI	CATG	9 cut(s)	10, 242, 421, 444, 474, 492, 804, 855, 1145
FauI	CCCGC	2 cut(s)	1119, 1428
FblI	GTMKAC	1 cut(s)	1010
Fnu4HI	GCNGC	3 cut(s)	78, 981, 1317
FokI	GGATG	4 cut(s)	279, 367, 902, 1238
Fsp4HI	GCNGC	3 cut(s)	78, 981, 1317
FspBI	CTAG	2 cut(s)	1109, 1471
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	2 cut(s)	473, 711
GluI	GCNGC	3 cut(s)	78, 981, 1317
GsuI	CTGGAG	1 cut(s)	1353
HaeIII	GGCC	3 cut(s)	1002, 1029, 1346
HapII	CCGG	1 cut(s)	850
HgaI	GACGC	1 cut(s)	1391
HhaI	GCGC	2 cut(s)	474, 712
Hin1II	CATG	9 cut(s)	14, 246, 425, 448, 478, 496, 808, 859, 1149
Hin6I	GCGC	2 cut(s)	472, 710
HinP1I	GCGC	2 cut(s)	472, 710
HincII	GTYRAC	3 cut(s)	451, 1011, 1406
HindII	GTYRAC	3 cut(s)	451, 1011, 1406
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	8 cut(s)	56, 265, 308, 479, 530, 548, 902, 1133
HpaII	CCGG	1 cut(s)	850
Hpy166II	GTNNAC	3 cut(s)	451, 1011, 1406
Hpy188I	TCNGA	8 cut(s)	102, 233, 626, 814, 907, 1138, 1298, 1459
Hpy188III	TCNNGA	3 cut(s)	797, 1049, 1370
Hpy8I	GTNNAC	3 cut(s)	451, 1011, 1406
Hpy99I	CGWCG	1 cut(s)	1012
HpyAV	CCTTC	5 cut(s)	100, 544, 570, 1223, 1306
HpyCH4III	ACNGT	4 cut(s)	486, 680, 701, 1015
HpyCH4IV	ACGT	1 cut(s)	1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 365, 730, 765, 1325, 1352
HpyF3I	CTNAG	8 cut(s)	121, 386, 623, 813, 885, 904, 943, 1036
HpySE526I	ACGT	1 cut(s)	1007
Hsp92II	CATG	9 cut(s)	14, 246, 425, 448, 478, 496, 808, 859, 1149
HspAI	GCGC	2 cut(s)	472, 710
Kzo9I	GATC	4 cut(s)	15, 26, 97, 801
LguI	GCTCTTC	2 cut(s)	817, 1181
LmnI	GCTCC	4 cut(s)	46, 852, 910, 1123
Lsp1109I	GCAGC	2 cut(s)	64, 967
LweI	GCATC	3 cut(s)	122, 214, 982
MaeI	CTAG	2 cut(s)	1109, 1471
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	3 cut(s)	480, 920, 1171
MalI	GATC	4 cut(s)	17, 28, 99, 803
MbiI	CCGCTC	2 cut(s)	430, 1126
MboI	GATC	4 cut(s)	15, 26, 97, 801
MfeI	CAATTG	1 cut(s)	1422
MhlI	GDGCHC	3 cut(s)	872, 915, 1193
MlsI	TGGCCA	1 cut(s)	1029
MluNI	TGGCCA	1 cut(s)	1029
MlyI	GAGTC	5 cut(s)	65, 488, 539, 557, 896
MmeI	TCCRAC	3 cut(s)	885, 1123, 1134
Mox20I	TGGCCA	1 cut(s)	1029
MroXI	GAANNNNTTC	2 cut(s)	660, 1233
MscI	TGGCCA	1 cut(s)	1029
MseI	TTAA	2 cut(s)	468, 950
Msp20I	TGGCCA	1 cut(s)	1029
MspA1I	CMGCKG	2 cut(s)	209, 1196
MspI	CCGG	1 cut(s)	850
MspR9I	CCNGG	1 cut(s)	1343
MunI	CAATTG	1 cut(s)	1422
Mva1269I	GAATGC	2 cut(s)	1233, 1330
MvaI	CCWGG	1 cut(s)	1343
MwoI	GCNNNNNNNGC	6 cut(s)	86, 365, 730, 765, 1325, 1352
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	4 cut(s)	15, 26, 97, 801
NlaIII	CATG	9 cut(s)	14, 246, 425, 448, 478, 496, 808, 859, 1149
NlaIV	GGNNCC	4 cut(s)	360, 434, 694, 1347
NmuCI	GTSAC	1 cut(s)	480
NsbI	TGCGCA	1 cut(s)	711
NspI	RCATGY	1 cut(s)	859
PciSI	GCTCTTC	2 cut(s)	817, 1181
PctI	GAATGC	2 cut(s)	1233, 1330
PdmI	GAANNNNTTC	2 cut(s)	660, 1233
PfeI	GAWTC	3 cut(s)	265, 308, 1133
PkrI	GCNGC	3 cut(s)	79, 982, 1318
PleI	GAGTC	5 cut(s)	64, 487, 538, 556, 896
PpsI	GAGTC	5 cut(s)	64, 487, 538, 556, 896
PsiI	TTATAA	2 cut(s)	72, 1058
Psp6I	CCWGG	1 cut(s)	1341
PspGI	CCWGG	1 cut(s)	1341
PspN4I	GGNNCC	4 cut(s)	360, 434, 694, 1347
PspPI	GGNCC	3 cut(s)	1294, 1339, 1345
PstI	CTGCAG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	1254
RsaNI	GTAC	1 cut(s)	1253
SalI	GTCGAC	1 cut(s)	1009
SapI	GCTCTTC	2 cut(s)	817, 1181
SaqAI	TTAA	2 cut(s)	468, 950
SatI	GCNGC	3 cut(s)	78, 981, 1317
Sau3AI	GATC	4 cut(s)	15, 26, 97, 801
Sau96I	GGNCC	3 cut(s)	1294, 1339, 1345
SchI	GAGTC	5 cut(s)	65, 488, 539, 557, 896
ScrFI	CCNGG	1 cut(s)	1343
SduI	GDGCHC	3 cut(s)	872, 915, 1193
SfaNI	GCATC	3 cut(s)	122, 214, 982
SfcI	CTRYAG	2 cut(s)	129, 1392
SinI	GGWCC	2 cut(s)	1294, 1339
SmlI	CTYRAG	1 cut(s)	865
SmoI	CTYRAG	1 cut(s)	865
SspMI	CTAG	2 cut(s)	1109, 1471
StyD4I	CCNGG	1 cut(s)	1341
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	486, 680, 701, 1015
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	4 cut(s)	153, 820, 1010, 1048
TaqII	GACCGA	1 cut(s)	917
TauI	GCSGC	1 cut(s)	1319
TfiI	GAWTC	3 cut(s)	265, 308, 1133
Tru1I	TTAA	2 cut(s)	468, 950
Tru9I	TTAA	2 cut(s)	468, 950
TscAI	CASTG	3 cut(s)	25, 489, 766
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	2 cut(s)	77, 980
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	8 cut(s)	281, 481, 526, 698, 972, 1085, 1242, 1325
TspGWI	ACGGA	2 cut(s)	584, 1117
TspRI	CASTG	3 cut(s)	25, 489, 766
VpaK11BI	GGWCC	2 cut(s)	1294, 1339
XagI	CCTNNNNNAGG	1 cut(s)	506
XapI	RAATTY	3 cut(s)	199, 1094, 1300
XceI	RCATGY	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	1010
XmnI	GAANNNNTTC	2 cut(s)	660, 1233
XspI	CTAG	2 cut(s)	1109, 1471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.