Rorug02G0482900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005195
Physical Location & Seq
Reverse (-)
61281182 .. 61284021
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0482900.1

Sequence Viewer

Length: 801 bp
ATGGCAATCAAATCCTATGAGATGGTGGCTGAGCAATACCTGCTCTCTGACCCTTTTGTTCCTTACACATCTATGCTTTTGGGGATTTGCGCCTGCAAATTGGTTTACCATGTTAACCATTTGCTCAGTGCTGCTTACTTCAAGGGATATTCTGGCCTTTCGAGGATGAAACGTATTGAGTGGAACAATAGGGCTATGTCAACTCTTCATGCCATTTTTATCACAGCTATGTCATTGTACTTGGTGTTTTGGTCGAATCTCTATTCCGACTATTCTGACAACCAACTCAAGCCATTTGTTACTTTGCAGAGCTCCCCATTGTCTACATTTGTATTGGGGGTTTCAGTTGGGTACTTCCTATCTGACCTTGGCATGATCTTTTGGTTTTACCCTGCTCTAGGTGGATTGGAATATGTGATTCATCATCTTCTTTCTATAGCATCTGTAGCATATGCAATGTTGACTGGGGAAGGACAACTGTATACCTACATGGTTCTTATCTCTGAGACAACCACCCCCGGTATCAATTTGAGATGGTATCTTGACACTGCTGGAATGAAGAGGACTAAAACTTATATGATAAATGGGGTTGTAATATTCATTGCTTGGCTGGTTGCCAGAATCCTTCTGTTCATGTTTCTGTTCTACCATCTCTACCTGCATTATGAACAGGTAAAACAAATGCACGCCGTTGGACAATTTTTAGCTTTCGGGGTGCCACCGATACTAGCTGTCATGAATTTGATATGGTTTGGGAAGATTTTGAAGGGCTTGAAGAAGACATTAGCAAAGAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

266

Amino Acids

30.46

Weight (kDa)

9.31

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 60 - 256 2.5e-33 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 48, 666
AccB1I GGYRCC 1 cut(s) 715
AccI GTMKAC 2 cut(s) 323, 482
AcsI RAATTY 1 cut(s) 739
AfaI GTAC 2 cut(s) 239, 353
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 3 cut(s) 142, 766, 775
AluBI AGCT 4 cut(s) 227, 312, 707, 731
AluI AGCT 4 cut(s) 227, 312, 707, 731
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 500
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 739
AspLEI GCGC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 519
BanI GGYRCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 785
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 118
BccI CCATC 3 cut(s) 16, 528, 657
BceAI ACGGC 1 cut(s) 674
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 398, 728
BfmI CTRYAG 2 cut(s) 435, 444
BfuAI ACCTGC 2 cut(s) 48, 666
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 519
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 1 cut(s) 519
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 785
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 367, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 2 cut(s) 462, 600
BseDI CCNNGG 2 cut(s) 367, 517
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 2 cut(s) 462, 600
BseMII CTCAG 3 cut(s) 21, 139, 495
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 500
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 375
Bsp1720I GCTNAGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 3 cut(s) 22, 138, 496
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 717
BspMI ACCTGC 2 cut(s) 48, 666
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 2 cut(s) 462, 600
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 367, 517
BssMI GATC 1 cut(s) 375
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 367
Bst1107I GTATAC 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 2 cut(s) 210, 554
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 94, 687
BstDEI CTNAG 3 cut(s) 30, 125, 504
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 2 cut(s) 40, 446
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 2 cut(s) 435, 444
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 785
BstZ17I GTATAC 1 cut(s) 483
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 133, 546
BveI ACCTGC 2 cut(s) 48, 666
Cac8I GCNNGC 2 cut(s) 94, 687
CciI TCATGA 1 cut(s) 735
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 238, 352
CviAII CATG 6 cut(s) 110, 209, 373, 490, 634, 736
CviQI GTAC 2 cut(s) 238, 352
DdeI CTNAG 3 cut(s) 30, 125, 504
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 210, 554
EarI CTCTTC 2 cut(s) 210, 554
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 6 cut(s) 113, 212, 376, 493, 637, 739
FatI CATG 6 cut(s) 109, 208, 372, 489, 633, 735
FauNDI CATATG 1 cut(s) 451
FblI GTMKAC 2 cut(s) 323, 482
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 398, 728
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 519
HhaI GCGC 1 cut(s) 92
Hin1II CATG 6 cut(s) 113, 212, 376, 493, 637, 739
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 3 cut(s) 115, 201, 462
HindII GTYRAC 3 cut(s) 115, 201, 462
HinfI GANTC 3 cut(s) 256, 418, 621
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 519
Hpy166II GTNNAC 6 cut(s) 106, 115, 201, 324, 462, 483
Hpy188I TCNGA 5 cut(s) 49, 268, 277, 364, 505
Hpy188III TCNNGA 2 cut(s) 542, 736
Hpy8I GTNNAC 6 cut(s) 106, 115, 201, 324, 462, 483
HpyAV CCTTC 3 cut(s) 464, 635, 760
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 5 cut(s) 96, 307, 455, 661, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 446
HpyF3I CTNAG 3 cut(s) 30, 125, 504
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 6 cut(s) 113, 212, 376, 493, 637, 739
HspAI GCGC 1 cut(s) 90
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 449
MaeI CTAG 2 cut(s) 398, 728
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 6 cut(s) 197, 419, 571, 769, 787, 790
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 98, 526, 698, 739
MmeI TCCRAC 2 cut(s) 291, 673
MnlI CCTC 3 cut(s) 156, 555, 786
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 2 cut(s) 71, 227
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 40, 446
NciI CCSGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 451
NdeII GATC 1 cut(s) 375
NlaIII CATG 6 cut(s) 113, 212, 376, 493, 637, 739
NlaIV GGNNCC 1 cut(s) 717
PagI TCATGA 1 cut(s) 735
PfeI GAWTC 3 cut(s) 256, 418, 621
PkrI GCNGC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 717
RsaI GTAC 2 cut(s) 239, 353
RsaNI GTAC 2 cut(s) 238, 352
RseI CAYNNNNRTG 2 cut(s) 71, 227
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 2 cut(s) 435, 444
SmiMI CAYNNNNRTG 2 cut(s) 71, 227
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 4 cut(s) 98, 526, 698, 739
SspI AATATT 1 cut(s) 597
SspMI CTAG 2 cut(s) 398, 728
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 161, 254
TasI AATT 4 cut(s) 98, 526, 698, 739
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 3 cut(s) 256, 418, 621
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 133, 553
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 8 cut(s) 182, 197, 410, 572, 589, 622, 681, 752
TspRI CASTG 2 cut(s) 133, 553
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 1 cut(s) 739
XmiI GTMKAC 2 cut(s) 323, 482
XspI CTAG 2 cut(s) 398, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.