Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005195

Physical Location & Seq

Genomic Coordinates Forward (+)

44423576 .. 44429806

Gene Structure 6231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG336000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGTGGGAATTGGGTGTTCACCCTGATCACTTTACATTCCCTTTTGTTCTTAAGGCTTGTGGTTATGTTTGTGACCATAAGGTTGGTGTAAAGGTTCATGGAGATGTGATTCAATGTGGTTATGCTGCAGATTTGTTTGTAGGCAATTCACTCATTGCACTTTATGGTAAACTGGGGCAGATCGAGGCTGCAAGAAAGGTGTTTGATAAAATTCCTGACCGTACTGTGGTTTCCTGGAGTTCAATGATTGGCGCGTATGCGCAAAATGGGTATTTTGAGGAAGGATTATTTTTGTTTGTGATGATGTTGAATGACAGATTGAGACCCAACAGGGCTGCAATTTTGAATGTGATGGCTTGTGTTTTAAGAAGCAAGGAGGCTGATGAGGTTTGTGCAGTCTTGATAGATAATGGACTTCAGTTTGATAGATCTGTTCAAAATGCTGCAATGCAGATGTATGCACGCTGCGGAAGAATTGATGTTGCTCGAGGTTTCTTTAATGGAATCATTGATAAAGACTTGGTGAGTTGGGCATCCATGATTGAAGCATATGCGCAAGTTAATTTGCCTCTTGAAGCCTTGGAGCTCTTTAAAAGTATGATGGTGCAAAGGATTCGCCCTGATTTGGTGGCACTTTTGAGTGTGATTCGCACTTGTTCAAATCTAGCATCATATAAGAAAGCACGCTGGATTCACGGAGTTGTTATTCGTTCCTTTTTTGGGCACCATGTCACGCTTGAAACTTCTCTAGTTGATCTATATGTAAAATGTGGAAGTTTGGTATATGCTAGAAAAGTTTTTGATAAGATGCAAGAAAGAAATATAATATCATGGAGCACCATGATTTCAGGATATGGGATGCATGGTCATGGAAGAGAAGCAGTCAACCTCTTTCATCAGATGAAGGCTCCAACAAAACCAGACCACGTTGCATTTCTATCAGTGTTGTCGGCATGCAGTCATGGTGGTTTGATTGCCGAAGGATGGGACTGCTTCAATTCTATGGGTCGGGATTTTCACATCATACCAAGACCCGAACATTATGCATGTATGGTTGATCTGTTGGGTCGATCTGGTCGACTGAATGAAGCCTTTGAGTTTATTGAGAGAATGCCGGTAAGGCCAGATGCTGGTGTTTGGGGAGCACTTCTCGGGGCATGTAGAATTCATTCAAACATAGAACTGGCAAAAACTGCTGCAAAGAATTTATTTGAATTGGATGCGGAGAACCCAGGTCGATATGTCCTCATGTCCAATATTTATGCATCTTCTGGTAAACAGAAGGATGCTGATAAAATTAGAGATTTAATGAAACAAAGAGGAGTGAGGAAGGTTGCTGGTCATACTAGTATAGAGATTAGAAACAAGGTCTACACATTTGTGGCTGGAGACAAGTCACATGCTCAATCTGATTTAATCTATTCAGAGTTGGAGAAAGTTATAAACAGGATTCGGCAAGAAGTAAATCATCGACCTGTTCATGAATTATCAGGAAGAGTTCGTGACACTGTTTCACACCATCTAGTTCATCAACTGACAAATGAGCTTTGTAATCCAGTCTGGAATGATTTTGATCTGTCATCGAAAAAAACGAATGATTTTGATCCTGGTAGTGCCTTAAACTTCTATGTGGAAAAATATGTGGAATTTGGAGGGTTCCCAGTTGAATCTCCATCTATCAAAGCTTCCATTGTTCACGCTCACAGGTGGTTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

572

Amino Acids

64.4

Weight (kDa)

8.44

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	77 - 105	4.8e-06	PPR repeat
PPR_2	PF13041	273 - 320	2.9e-07	PPR repeat family
PPR	PF01535	276 - 302	1e-06	PPR repeat
E_motif	PF20431	390 - 452	6.2e-20	E motif
Eplus_motif	PF20430	457 - 484	9.7e-08	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43680
malus_domestica	MD04G1244800.v1.1 MD05G1188100.v1.1 MD09G1103700.v1.1
prunus_persica	Prupe.3G221900_v2.0.a1 Prupe.6G361400_v2.0.a1
pyrus_communis	pycom04g21560
rosa_chinensis	RchiOBHm_Chr2g0127291 RchiOBHm_Chr2g0127861 RchiOBHm_Chr2g0160301
rosa_laevigata	RLG00000018967 RLG00000021211
rosa_multiflora	Rmu_sc0007523.1_g000001 Rmu_sc0008269.1_g000001 Rmu_sc0008949.1_g000007 Rmu_sc0029272.1_g000003
rosa_roxburghii	Rroxscaffold_2G00089870 Rroxscaffold_2G00116310
rosa_rugosa	Rorug02G0275400 Rorug02G0275500 Rorug02G0275600 Rorug02G0275700 Rorug02G0482900
rosa_samantha	Rh2BG336000 Rh2BG561700 Rh2CG314200 Rh2CG532500 Rh2DG353700
rosa_wichuraiana	Rw2G026490 Rw2G045360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1442
Acc16I	TGCGCA	2 cut(s)	261, 555
AccB1I	GGYRCC	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	1130
AccI	GTMKAC	2 cut(s)	1078, 1371
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	468, 1223
AclWI	GGATC	1 cut(s)	1598
AcsI	RAATTY	4 cut(s)	210, 1164, 1204, 1646
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	5 cut(s)	226, 625, 720, 984, 1130
AflII	CTTAAG	1 cut(s)	50
AhlI	ACTAGT	1 cut(s)	1346
AjnI	CCWGG	3 cut(s)	233, 1231, 1606
AleI	CACNNNNGTG	1 cut(s)	1379
AluBI	AGCT	3 cut(s)	586, 1546, 1685
AluI	AGCT	3 cut(s)	586, 1546, 1685
Alw21I	GWGCWC	3 cut(s)	588, 839, 1147
Alw26I	GTCTC	2 cut(s)	316, 1383
AlwI	GGATC	1 cut(s)	1598
AlwNI	CAGNNNCTG	1 cut(s)	1130
Ama87I	CYCGRG	2 cut(s)	486, 1151
AoxI	GGCC	1 cut(s)	1121
ApeKI	GCWGC	6 cut(s)	125, 188, 335, 443, 465, 1196
ApoI	RAATTY	4 cut(s)	210, 1164, 1204, 1646
Asp700I	GAANNNNTTC	1 cut(s)	1168
AspLEI	GCGC	3 cut(s)	254, 262, 556
AsuHPI	GGTGA	2 cut(s)	11, 535
AvaI	CYCGRG	2 cut(s)	486, 1151
BaeGI	GKGCMC	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	588
Bbv12I	GWGCWC	3 cut(s)	588, 839, 1147
BbvI	GCAGC	6 cut(s)	112, 175, 322, 430, 452, 1183
BccI	CCATC	5 cut(s)	346, 595, 978, 1527, 1681
BcgI	CGANNNNNNTGC	4 cut(s)	596, 630, 1025, 1059
BciT130I	CCWGG	3 cut(s)	235, 1233, 1608
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	316, 1383
BcuI	ACTAGT	1 cut(s)	1346
BfaI	CTAG	5 cut(s)	665, 749, 789, 1347, 1523
BfmI	CTRYAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	50
BglI	GCCNNNNNGGC	1 cut(s)	1120
BglII	AGATCT	1 cut(s)	428
BisI	GCNGC	6 cut(s)	126, 189, 336, 444, 466, 1197
BlsI	GCNGC	6 cut(s)	127, 190, 337, 445, 467, 1198
Bme1390I	CCNGG	3 cut(s)	235, 1233, 1608
BmeT110I	CYCGRG	2 cut(s)	486, 1151
BmiI	GGNNCC	3 cut(s)	725, 909, 1658
BmrFI	CCNGG	3 cut(s)	235, 1233, 1608
BmrI	ACTGGG	2 cut(s)	182, 1655
BmsI	GCATC	8 cut(s)	542, 677, 798, 849, 1117, 1210, 1274, 1276
BmuI	ACTGGG	2 cut(s)	182, 1655
BplI	GAGNNNNNCTC	2 cut(s)	1134, 1166
BpmI	CTGGAG	2 cut(s)	256, 1407
BsaBI	GATNNNNATC	2 cut(s)	1572, 1602
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	579, 1231
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 625, 720, 984, 1130
Bse118I	RCCGGY	1 cut(s)	1114
Bse1I	ACTGG	4 cut(s)	177, 1188, 1556, 1661
Bse3DI	GCAATG	2 cut(s)	153, 453
Bse8I	GATNNNNATC	2 cut(s)	1572, 1602
BseBI	CCWGG	3 cut(s)	235, 1233, 1608
BseDI	CCNNGG	2 cut(s)	579, 1231
BseGI	GGATG	5 cut(s)	533, 864, 989, 1225, 1291
BseJI	GATNNNNATC	2 cut(s)	1572, 1602
BseLI	CCNNNNNNNGG	5 cut(s)	226, 625, 720, 984, 1130
BseMI	GCAATG	2 cut(s)	153, 453
BseNI	ACTGG	4 cut(s)	177, 1188, 1556, 1661
BseRI	GAGGAG	1 cut(s)	1335
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	6 cut(s)	112, 175, 322, 430, 452, 1183
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	1123
BshNI	GGYRCC	1 cut(s)	723
BsiHKAI	GWGCWC	3 cut(s)	588, 839, 1147
BsiHKCI	CYCGRG	2 cut(s)	486, 1151
BsiSI	CCGG	1 cut(s)	1115
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	5 cut(s)	226, 625, 720, 984, 1130
BsmAI	GTCTC	2 cut(s)	316, 1383
BsmFI	GGGAC	1 cut(s)	1001
BsmI	GAATGC	1 cut(s)	1116
BsnI	GGCC	1 cut(s)	1123
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	2 cut(s)	486, 1151
Bsp1286I	GDGCHC	4 cut(s)	588, 726, 839, 1147
Bsp143I	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
BspACI	CCGC	2 cut(s)	468, 1223
BspANI	GGCC	1 cut(s)	1123
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	1480
BspLI	GGNNCC	3 cut(s)	725, 909, 1658
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	1598
BspT107I	GGYRCC	1 cut(s)	723
BspTI	CTTAAG	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	153, 453
BsrFI	RCCGGY	1 cut(s)	1114
BsrI	ACTGG	4 cut(s)	177, 1188, 1556, 1661
BssAI	RCCGGY	1 cut(s)	1114
BssECI	CCNNGG	2 cut(s)	579, 1231
BssMI	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	3 cut(s)	235, 1233, 1608
Bst4CI	ACNGT	3 cut(s)	221, 226, 1510
Bst6I	CTCTTC	2 cut(s)	868, 1489
BstAFI	CTTAAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstC8I	GCNNGC	3 cut(s)	463, 685, 955
BstF5I	GGATG	5 cut(s)	533, 864, 989, 1225, 1291
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	3 cut(s)	254, 262, 556
BstKTI	GATC	8 cut(s)	28, 183, 431, 757, 1060, 1073, 1576, 1606
BstMAI	GTCTC	2 cut(s)	316, 1383
BstMBI	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
BstMWI	GCNNNNNNNGC	2 cut(s)	1120, 1193
BstNI	CCWGG	3 cut(s)	235, 1233, 1608
BstNSI	RCATGY	4 cut(s)	957, 1050, 1161, 1403
BstSCI	CCNGG	3 cut(s)	233, 1231, 1606
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	726
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	6 cut(s)	112, 175, 322, 430, 452, 1183
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	1123
BtsCI	GGATG	5 cut(s)	533, 864, 989, 1225, 1291
BtsIMutI	CAGTG	2 cut(s)	948, 1506
Cac8I	GCNNGC	3 cut(s)	463, 685, 955
CaiI	CAGNNNCTG	1 cut(s)	1130
CciI	TCATGA	1 cut(s)	1480
CfoI	GCGC	3 cut(s)	254, 262, 556
Cfr10I	RCCGGY	1 cut(s)	1114
Csp6I	GTAC	1 cut(s)	222
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	8 cut(s)	27, 182, 430, 756, 1059, 1072, 1575, 1605
DpnII	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
DraI	TTTAAA	1 cut(s)	592
Eam1104I	CTCTTC	2 cut(s)	868, 1489
EarI	CTCTTC	2 cut(s)	868, 1489
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	401
Eco88I	CYCGRG	2 cut(s)	486, 1151
EcoICRI	GAGCTC	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	1164
EcoRII	CCWGG	3 cut(s)	233, 1231, 1606
EcoT14I	CCWWGG	1 cut(s)	579
EcoT22I	ATGCAT	3 cut(s)	864, 1048, 1267
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	579
FaqI	GGGAC	1 cut(s)	1001
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	2 cut(s)	1078, 1371
Fnu4HI	GCNGC	6 cut(s)	126, 189, 336, 444, 466, 1197
FokI	GGATG	5 cut(s)	520, 871, 996, 1232, 1298
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	6 cut(s)	126, 189, 336, 444, 466, 1197
FspBI	CTAG	5 cut(s)	665, 749, 789, 1347, 1523
FspI	TGCGCA	2 cut(s)	261, 555
GlaI	GCGC	3 cut(s)	253, 261, 555
GluI	GCNGC	6 cut(s)	126, 189, 336, 444, 466, 1197
GsuI	CTGGAG	2 cut(s)	256, 1407
HaeIII	GGCC	1 cut(s)	1123
HapII	CCGG	1 cut(s)	1115
HhaI	GCGC	3 cut(s)	254, 262, 556
Hin6I	GCGC	3 cut(s)	252, 260, 554
HinP1I	GCGC	3 cut(s)	252, 260, 554
HincII	GTYRAC	2 cut(s)	886, 1079
HindII	GTYRAC	2 cut(s)	886, 1079
HindIII	AAGCTT	1 cut(s)	1683
HinfI	GANTC	7 cut(s)	109, 504, 613, 646, 691, 1450, 1667
HpaII	CCGG	1 cut(s)	1115
HphI	GGTGA	2 cut(s)	11, 535
Hpy166II	GTNNAC	7 cut(s)	19, 170, 886, 1079, 1277, 1372, 1696
Hpy188I	TCNGA	3 cut(s)	900, 1411, 1426
Hpy188III	TCNNGA	9 cut(s)	215, 400, 572, 849, 1010, 1481, 1491, 1502, 1561
Hpy8I	GTNNAC	7 cut(s)	19, 170, 886, 1079, 1277, 1372, 1696
HpyAV	CCTTC	5 cut(s)	275, 898, 974, 1276, 1324
HpyCH4III	ACNGT	3 cut(s)	221, 226, 1510
HpyCH4IV	ACGT	1 cut(s)	927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1120, 1193
HpySE526I	ACGT	1 cut(s)	927
HspAI	GCGC	3 cut(s)	252, 260, 554
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
LmnI	GCTCC	4 cut(s)	583, 834, 913, 1142
Lsp1109I	GCAGC	6 cut(s)	112, 175, 322, 430, 452, 1183
LweI	GCATC	8 cut(s)	542, 677, 798, 849, 1117, 1210, 1274, 1276
MaeI	CTAG	5 cut(s)	665, 749, 789, 1347, 1523
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	4 cut(s)	71, 730, 1395, 1502
MalI	GATC	8 cut(s)	27, 182, 430, 756, 1059, 1072, 1575, 1605
MboI	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
MboII	GAAGA	4 cut(s)	483, 885, 1260, 1506
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	4 cut(s)	588, 726, 839, 1147
MmeI	TCCRAC	2 cut(s)	935, 1410
Mph1103I	ATGCAT	3 cut(s)	864, 1048, 1267
MroXI	GAANNNNTTC	1 cut(s)	1168
MseI	TTAA	9 cut(s)	51, 365, 498, 561, 591, 1307, 1415, 1619, 1712
MslI	CAYNNNNRTG	3 cut(s)	102, 867, 1379
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	1 cut(s)	1115
MspR9I	CCNGG	3 cut(s)	235, 1233, 1608
Mva1269I	GAATGC	1 cut(s)	1116
MvaI	CCWGG	3 cut(s)	235, 1233, 1608
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	1120, 1193
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
NlaIV	GGNNCC	3 cut(s)	725, 909, 1658
NmuCI	GTSAC	4 cut(s)	71, 730, 1395, 1502
NsbI	TGCGCA	2 cut(s)	261, 555
NsiI	ATGCAT	3 cut(s)	864, 1048, 1267
NspI	RCATGY	4 cut(s)	957, 1050, 1161, 1403
OliI	CACNNNNGTG	1 cut(s)	1379
PaeI	GCATGC	1 cut(s)	957
PaeR7I	CTCGAG	1 cut(s)	486
PagI	TCATGA	1 cut(s)	1480
PcsI	WCGNNNNNNNCGW	2 cut(s)	1075, 1589
PctI	GAATGC	1 cut(s)	1116
PdmI	GAANNNNTTC	1 cut(s)	1168
PfeI	GAWTC	7 cut(s)	109, 504, 613, 646, 691, 1450, 1667
PflMI	CCANNNNNTGG	1 cut(s)	1130
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	6 cut(s)	127, 190, 337, 445, 467, 1198
PsiI	TTATAA	1 cut(s)	1442
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	3 cut(s)	233, 1231, 1606
PspGI	CCWGG	3 cut(s)	233, 1231, 1606
PspN4I	GGNNCC	3 cut(s)	725, 909, 1658
PspXI	VCTCGAGB	1 cut(s)	486
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	1130
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	3 cut(s)	102, 867, 1379
SacI	GAGCTC	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	1077
SaqAI	TTAA	9 cut(s)	51, 365, 498, 561, 591, 1307, 1415, 1619, 1712
SatI	GCNGC	6 cut(s)	126, 189, 336, 444, 466, 1197
Sau3AI	GATC	8 cut(s)	25, 180, 428, 754, 1057, 1070, 1573, 1603
ScrFI	CCNGG	3 cut(s)	235, 1233, 1608
SduI	GDGCHC	4 cut(s)	588, 726, 839, 1147
SfaNI	GCATC	8 cut(s)	542, 677, 798, 849, 1117, 1210, 1274, 1276
SfcI	CTRYAG	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	486
SlaI	CTCGAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	3 cut(s)	102, 867, 1379
SmlI	CTYRAG	2 cut(s)	50, 486
SmoI	CTYRAG	2 cut(s)	50, 486
SpeI	ACTAGT	1 cut(s)	1346
SphI	GCATGC	1 cut(s)	957
SsiI	CCGC	2 cut(s)	468, 1223
SspI	AATATT	1 cut(s)	1258
SspMI	CTAG	5 cut(s)	665, 749, 789, 1347, 1523
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	3 cut(s)	233, 1231, 1606
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	3 cut(s)	221, 226, 1510
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	7 cut(s)	183, 487, 1069, 1078, 1237, 1471, 1583
TfiI	GAWTC	7 cut(s)	109, 504, 613, 646, 691, 1450, 1667
Tru1I	TTAA	9 cut(s)	51, 365, 498, 561, 591, 1307, 1415, 1619, 1712
Tru9I	TTAA	9 cut(s)	51, 365, 498, 561, 591, 1307, 1415, 1619, 1712
TscAI	CASTG	2 cut(s)	948, 1513
TseFI	GTSAC	4 cut(s)	71, 730, 1395, 1502
TseI	GCWGC	6 cut(s)	125, 188, 335, 443, 465, 1196
Tsp45I	GTSAC	4 cut(s)	71, 730, 1395, 1502
TspDTI	ATGAA	9 cut(s)	86, 884, 917, 1101, 1157, 1325, 1469, 1497, 1517
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	948, 1513
Van91I	CCANNNNNTGG	1 cut(s)	1130
Vha464I	CTTAAG	1 cut(s)	50
XapI	RAATTY	4 cut(s)	210, 1164, 1204, 1646
XceI	RCATGY	4 cut(s)	957, 1050, 1161, 1403
XhoI	CTCGAG	1 cut(s)	486
XmiI	GTMKAC	2 cut(s)	1078, 1371
XmnI	GAANNNNTTC	1 cut(s)	1168
XspI	CTAG	5 cut(s)	665, 749, 789, 1347, 1523
Zsp2I	ATGCAT	3 cut(s)	864, 1048, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.