Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008269.1

Orthogroup ID

OG0005195

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 765

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtttaatagaatgacccgagaatacaaagtgaagccaacagttgcgcactattcatgtctggtggatgttctcggcagagcagggcgcttagatgaagcatatgaactcattaagactattgaagtagaacccagcagtgatatatgggctgcacttctctctgcttgcaggctatatccaaatgtcaagctggcggagatttcagcacagaagattttcgaaatgaacccagagggagtgggtagttacatttgtctttccaatatctatgccgctgagaagcgatgggatgatgtggaaagagtgagagccatggtgagaaagaagggactgaagaaaccacctggctgcacttttgtggagttagacaagatggttcatcggttcttagttggggataagtcgcacccacaaacagaggatatttatgccaagttaaaagacttgaacctgcgactcagggaggttggatacaagcctgataccacttctgtgttgtatgatgtaggagaagaaatgaaggagaagatgctttgggatcatagtgaaagattggcaattgcatttgcccttattaacacaagaccagggaccacaatcaggatctccaagaatcttcgtatctgtgttgattgccacacggtaacgaaaatgatttctaaattcacggctcgagagattataatgcgagataaccataggttccaccattttagagatggattttgctcttgtggtgattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

250

Amino Acids

28.96

Weight (kDa)

8.82

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43680
malus_domestica	MD04G1244800.v1.1 MD05G1188100.v1.1 MD09G1103700.v1.1
prunus_persica	Prupe.3G221900_v2.0.a1 Prupe.6G361400_v2.0.a1
pyrus_communis	pycom04g21560
rosa_chinensis	RchiOBHm_Chr2g0127291 RchiOBHm_Chr2g0127861 RchiOBHm_Chr2g0160301
rosa_laevigata	RLG00000018967 RLG00000021211
rosa_multiflora	Rmu_sc0007523.1_g000001 Rmu_sc0008269.1_g000001 Rmu_sc0008949.1_g000007 Rmu_sc0029272.1_g000003
rosa_roxburghii	Rroxscaffold_2G00089870 Rroxscaffold_2G00116310
rosa_rugosa	Rorug02G0275400 Rorug02G0275500 Rorug02G0275600 Rorug02G0275700 Rorug02G0482900
rosa_samantha	Rh2BG336000 Rh2BG561700 Rh2CG314200 Rh2CG532500 Rh2DG353700
rosa_wichuraiana	Rw2G026490 Rw2G045360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
Acc16I	TGCGCA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	462
AciI	CCGC	2 cut(s)	197, 276
AclWI	GGATC	2 cut(s)	549, 614
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	603
AgsI	TTSAA	2 cut(s)	125, 451
AjnI	CCWGG	2 cut(s)	346, 589
AleI	CACNNNNGTG	2 cut(s)	359, 494
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	2 cut(s)	549, 614
Ama87I	CYCGRG	2 cut(s)	18, 675
ApeKI	GCWGC	2 cut(s)	152, 351
ApoI	RAATTY	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	49, 90
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	2 cut(s)	331, 752
AsuII	TTCGAA	1 cut(s)	222
AvaI	CYCGRG	2 cut(s)	18, 675
AvaII	GGWCC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	139, 338
BccI	CCATC	3 cut(s)	282, 370, 716
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	2 cut(s)	348, 591
BciVI	GTATCC	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	3 cut(s)	153, 276, 352
BlsI	GCNGC	3 cut(s)	154, 277, 353
Bme1390I	CCNGG	2 cut(s)	348, 591
Bme18I	GGWCC	1 cut(s)	594
BmeT110I	CYCGRG	2 cut(s)	18, 675
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	2 cut(s)	595, 707
BmrFI	CCNGG	2 cut(s)	348, 591
BmsI	GCATC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	315, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	348, 591
BseDI	CCNNGG	2 cut(s)	315, 590
BseGI	GGATG	2 cut(s)	73, 298
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	270, 475
BseXI	GCAGC	2 cut(s)	139, 338
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	2 cut(s)	138, 337
BsiHKCI	CYCGRG	2 cut(s)	18, 675
BslFI	GGGAC	2 cut(s)	345, 607
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	345, 607
BsoBI	CYCGRG	2 cut(s)	18, 675
Bsp119I	TTCGAA	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	541, 606
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	2 cut(s)	197, 276
BspCNI	CTCAG	2 cut(s)	271, 474
BspLI	GGNNCC	2 cut(s)	595, 707
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	2 cut(s)	549, 614
BspT104I	TTCGAA	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	315, 590
BssMI	GATC	2 cut(s)	541, 606
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	348, 591
Bst4CI	ACNGT	2 cut(s)	43, 646
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	169, 173, 195
BstDEI	CTNAG	4 cut(s)	91, 279, 391, 461
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	73, 298
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	49, 90
BstKTI	GATC	2 cut(s)	544, 609
BstMBI	GATC	2 cut(s)	541, 606
BstNI	CCWGG	2 cut(s)	348, 591
BstSCI	CCNGG	2 cut(s)	346, 589
BstV1I	GCAGC	2 cut(s)	139, 338
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	73, 298
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	169, 173, 195
CfoI	GCGC	2 cut(s)	49, 90
Cfr13I	GGNCC	1 cut(s)	594
CviAII	CATG	2 cut(s)	57, 316
CviJI	RGCY	8 cut(s)	37, 152, 175, 193, 314, 351, 481, 674
CviKI_1	RGCY	8 cut(s)	37, 152, 175, 193, 314, 351, 481, 674
DdeI	CTNAG	4 cut(s)	91, 279, 391, 461
DpnI	GATC	2 cut(s)	543, 608
DpnII	GATC	2 cut(s)	541, 606
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	2 cut(s)	18, 675
EcoRII	CCWGG	2 cut(s)	346, 589
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	60, 319
FaqI	GGGAC	2 cut(s)	345, 607
FatI	CATG	2 cut(s)	56, 315
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	153, 276, 352
FokI	GGATG	2 cut(s)	80, 305
Fsp4HI	GCNGC	3 cut(s)	153, 276, 352
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	2 cut(s)	48, 89
GluI	GCNGC	3 cut(s)	153, 276, 352
GsaI	CCCAGC	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	91
HhaI	GCGC	2 cut(s)	49, 90
Hin1II	CATG	2 cut(s)	60, 319
Hin6I	GCGC	2 cut(s)	47, 88
HinP1I	GCGC	2 cut(s)	47, 88
HinfI	GANTC	2 cut(s)	459, 616
HphI	GGTGA	2 cut(s)	331, 752
Hpy188III	TCNNGA	2 cut(s)	604, 677
HpyAV	CCTTC	2 cut(s)	322, 517
HpyCH4III	ACNGT	2 cut(s)	43, 646
HpyCH4V	TGCA	4 cut(s)	155, 171, 354, 566
HpyF3I	CTNAG	4 cut(s)	91, 279, 391, 461
Hsp92II	CATG	2 cut(s)	60, 319
HspAI	GCGC	2 cut(s)	47, 88
Kzo9I	GATC	2 cut(s)	541, 606
Lsp1109I	GCAGC	2 cut(s)	139, 338
LweI	GCATC	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	248, 646
MalI	GATC	2 cut(s)	543, 608
MboI	GATC	2 cut(s)	541, 606
MboII	GAAGA	5 cut(s)	226, 349, 527, 541, 611
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	606
MluCI	AATT	2 cut(s)	561, 665
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	3 cut(s)	229, 415, 460
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	4 cut(s)	6, 114, 440, 579
MslI	CAYNNNNRTG	2 cut(s)	359, 494
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	348, 591
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	348, 591
NcoI	CCATGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	2 cut(s)	541, 606
NlaIII	CATG	2 cut(s)	60, 319
NlaIV	GGNNCC	2 cut(s)	595, 707
NmeAIII	GCCGAG	1 cut(s)	54
NsbI	TGCGCA	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	222
OliI	CACNNNNGTG	2 cut(s)	359, 494
PaeR7I	CTCGAG	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	616
PkrI	GCNGC	3 cut(s)	154, 277, 353
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	346, 589
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	346, 589
PspN4I	GGNNCC	2 cut(s)	595, 707
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	606
RseI	CAYNNNNRTG	2 cut(s)	359, 494
SaqAI	TTAA	4 cut(s)	6, 114, 440, 579
SatI	GCNGC	3 cut(s)	153, 276, 352
Sau3AI	GATC	2 cut(s)	541, 606
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	2 cut(s)	348, 591
SetI	ASST	5 cut(s)	195, 349, 456, 471, 707
SfaNI	GCATC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	675
SfuI	TTCGAA	1 cut(s)	222
SinI	GGWCC	1 cut(s)	594
SlaI	CTCGAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	359, 494
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	2 cut(s)	561, 665
SsiI	CCGC	2 cut(s)	197, 276
StyD4I	CCNGG	2 cut(s)	346, 589
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	43, 646
TaqI	TCGA	2 cut(s)	222, 676
TasI	AATT	2 cut(s)	561, 665
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	4 cut(s)	6, 114, 440, 579
Tru9I	TTAA	4 cut(s)	6, 114, 440, 579
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	152, 351
TspDTI	ATGAA	6 cut(s)	45, 111, 120, 242, 371, 536
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XhoI	CTCGAG	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.