pycom09g04590

Nuclear protein Es2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010388
Physical Location & Seq
Reverse (-)
3392951 .. 3394487
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1497 bp
ATGCTTCTCACTCCAGGCCACTCTCCTCGCCACCTCTCATCCCCTTCGCCCTCTACAATTTCCGAAGCTTCTGCCCTAAACCCTACGAATTCCACCCAAATCTCACCCAAGAACCCTCAAGGCCACCCCACGGTCCTCGATGAAGACACCTATGTCGCCGCGATCGAGAAGATCATTGAAAGGGACTTCTTTCCCGATATTTCCAAGCTCCGGGACCGCCTCGACTGGCTCGAAGCGATCAAGACCCGCGACCCGGTTCAGATTCGAGACGCCCAGTTGAAGATCATCGAGCGGCGCGGAAAGAAGGTAACTCATAATCCTGACCCTGATGGTAGAACCCCAGGTTCGACTTTTATGCGTAGTTTTACCCCTGCCGATGAATTTGATGGTAAAACCCCGAAAATCCCGGGTGTTTCGAATGTGGGATTGTCCGGTGATGTAGGGTCTAGCGGCGTTGATGATAGCGTAGAGGGCTCGTTGTCGCTTGATCAGTTCTTTAGGCGGTATACGAGTGAGGACAATCATAGTTTTTCAAATATTTTGGAGAAGGTGAATAGGAAGAGGAAGGAGAGATATGAGTATTTGACGGACGGTGAAAAGGAGGAGGTTAAATCTATTGAGGATGTGAAGAGGGATAGGATTACAGATGGGTATGGAACGTTGGATCAGCCGCCTAGTACATTGGATGGGTGGAAGTATACAGCGAAAAATTTGCTGATGTACCATCCTGCTGATCGAGGTGAGGCCCCATTGACAGAGGAGGAACGTGCAAATAGGATGAAGAGTTTGGAGAAGGAAATTAATCGACCCAATACGCGATTCCATGGGAAGACGATTGATTCCAGGCCAAAGGAGGATGCTATGGCCGAGTTTCTTTATACCACAGTTGCAGGTGCAACCCCAGTTATCATGGATAGAGATGGGGATAAGTTGAAGAAGTATGATTTGGATGATTTGAGGAAGACTCCCAATCCATTTTATGTGGAATCGGAGAAAAAAGCAGATAATGGTTATAGTTTTGTGAAGACACCCTCGCCTGCACTAGGTGTTGATGAATCACCGTTTATTACATGGGGTGAAATTGAAGGGACACCTCTGAGGTTGGATCTCGAGGACAATCCAGTTGATGTTGGTGGTGGTGAAGGGCCTCATTATAGGATCCCATGCCCGCCTGTAAGAGACGAAAAGGCTCACTCGCTGTCAAGGGAAGCTGCACGCAAATTGAGGGAAAGGTCAAAATTGTTTCACAAGCCACCTCTGCCATCACCTTCTAGAGGTGGCAGTGCCAGTCCAAGTGTGCGGACACTCTCCCCTGCTGCTCAGAAGTTTGTAAGGAATGCAATTGGCAAGTCCTCGTCTTCTATTGATGAAACTCTTCGTGCCAGTTACCGAGTGTATCGAGGCTTGGAAGCCATGCTAGCATCATATCAAGATCACCTTCTGCTGCAAGGGAGGGAACTAATCCTCCTTGGTAATTTGGAGTTTTCTTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Es2

Protein Analysis

499

Amino Acids

55.73

Weight (kDa)

6.19

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Es2 PF09751 43 - 443 4.2e-104 Nuclear protein Es2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 881
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 2 cut(s) 506, 698
AccII CGCG 4 cut(s) 161, 249, 297, 817
AclI AACGTT 1 cut(s) 659
AclWI GGATC 4 cut(s) 672, 1113, 1153, 1166
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 3 cut(s) 88, 380, 709
AcyI GRCGYC 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 1046
AfaI GTAC 2 cut(s) 679, 722
AfiI CCNNNNNNNGG 5 cut(s) 130, 210, 253, 1043, 1274
AgsI TTSAA 5 cut(s) 179, 280, 534, 934, 1085
AjnI CCWGG 3 cut(s) 13, 340, 842
AjuI GAANNNNNNNTTGG 4 cut(s) 803, 835, 929, 961
AloI GAACNNNNNNTCC 2 cut(s) 1449, 1481
AluBI AGCT 3 cut(s) 68, 208, 1211
AluI AGCT 3 cut(s) 68, 208, 1211
Alw26I GTCTC 2 cut(s) 261, 1173
AlwI GGATC 4 cut(s) 672, 1113, 1153, 1166
Ama87I CYCGRG 2 cut(s) 406, 1109
AoxI GGCC 6 cut(s) 16, 121, 744, 845, 864, 1145
ApeKI GCWGC 3 cut(s) 1211, 1316, 1444
ApoI RAATTY 3 cut(s) 88, 380, 709
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 1374
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 4 cut(s) 133, 214, 745, 1145
AsuC2I CCSGG 4 cut(s) 212, 254, 407, 408
AsuII TTCGAA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 1417
AvaI CYCGRG 2 cut(s) 406, 1109
AvaII GGWCC 2 cut(s) 133, 214
BamHI GGATCC 1 cut(s) 1158
BanII GRGCYC 1 cut(s) 476
BbsI GAAGAC 5 cut(s) 150, 836, 968, 1031, 1350
BbvI GCAGC 3 cut(s) 1198, 1303, 1431
BccI CCATC 7 cut(s) 323, 380, 641, 680, 732, 914, 1270
BcgI CGANNNNNNTGC 6 cut(s) 53, 87, 337, 371, 694, 728
BciT130I CCWGG 3 cut(s) 15, 342, 844
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 4 cut(s) 212, 254, 407, 408
BcoDI GTCTC 2 cut(s) 261, 1173
BfaI CTAG 5 cut(s) 447, 675, 1043, 1272, 1418
BfuAI ACCTGC 1 cut(s) 881
BisI GCNGC 7 cut(s) 159, 293, 451, 671, 1212, 1317, 1445
BlsI GCNGC 7 cut(s) 160, 294, 452, 672, 1213, 1318, 1446
Bme1390I CCNGG 7 cut(s) 15, 212, 254, 342, 407, 408, 844
Bme18I GGWCC 2 cut(s) 133, 214
BmeT110I CYCGRG 2 cut(s) 406, 1109
BmgT120I GGNCC 4 cut(s) 133, 214, 745, 1145
BmiI GGNNCC 3 cut(s) 215, 747, 1160
BmrFI CCNGG 7 cut(s) 15, 212, 254, 342, 407, 408, 844
BmrI ACTGGG 2 cut(s) 268, 896
BmsI GCATC 2 cut(s) 847, 1430
BmtI GCTAGC 1 cut(s) 1421
BmuI ACTGGG 2 cut(s) 268, 896
BpiI GAAGAC 5 cut(s) 150, 836, 968, 1031, 1350
BplI GAGNNNNNCTC 2 cut(s) 949, 981
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 4 cut(s) 212, 254, 407, 408
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 5 cut(s) 129, 340, 406, 823, 1468
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 1449, 1479
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 210, 253, 1043, 1274
Bse1I ACTGG 6 cut(s) 230, 274, 902, 1121, 1287, 1383
BseBI CCWGG 3 cut(s) 15, 342, 844
BseDI CCNNGG 5 cut(s) 129, 340, 406, 823, 1468
BseGI GGATG 7 cut(s) 38, 628, 691, 724, 783, 862, 955
BseLI CCNNNNNNNGG 5 cut(s) 130, 210, 253, 1043, 1274
BseMII CTCAG 2 cut(s) 1088, 1334
BseNI ACTGG 6 cut(s) 230, 274, 902, 1121, 1287, 1383
BseRI GAGGAG 3 cut(s) 15, 617, 773
BseXI GCAGC 3 cut(s) 1198, 1303, 1431
BsgI GTGCAG 2 cut(s) 1023, 1197
Bsh1236I CGCG 4 cut(s) 161, 249, 297, 817
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 6 cut(s) 18, 123, 746, 847, 866, 1147
BsiEI CGRYCG 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 406, 1109
BsiSI CCGG 4 cut(s) 211, 254, 407, 432
BslFI GGGAC 3 cut(s) 197, 227, 1102
BslI CCNNNNNNNGG 5 cut(s) 130, 210, 253, 1043, 1274
BsmAI GTCTC 2 cut(s) 261, 1173
BsmBI CGTCTC 2 cut(s) 261, 1173
BsmFI GGGAC 3 cut(s) 197, 227, 1102
BsmI GAATGC 1 cut(s) 1342
BsnI GGCC 6 cut(s) 18, 123, 746, 847, 866, 1147
BsoBI CYCGRG 2 cut(s) 406, 1109
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 476
Bsp19I CCATGG 1 cut(s) 823
BspANI GGCC 6 cut(s) 18, 123, 746, 847, 866, 1147
BspCNI CTCAG 2 cut(s) 1089, 1333
BspFNI CGCG 4 cut(s) 161, 249, 297, 817
BspLI GGNNCC 3 cut(s) 215, 747, 1160
BspMI ACCTGC 1 cut(s) 881
BspOI GCTAGC 1 cut(s) 1421
BspPI GGATC 4 cut(s) 672, 1113, 1153, 1166
BspT104I TTCGAA 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 292
BsrI ACTGG 6 cut(s) 230, 274, 902, 1121, 1287, 1383
BssECI CCNNGG 5 cut(s) 129, 340, 406, 823, 1468
BssNAI GTATAC 2 cut(s) 507, 699
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 823, 1468
Bst1107I GTATAC 2 cut(s) 507, 699
Bst2UI CCWGG 3 cut(s) 15, 342, 844
Bst4CI ACNGT 4 cut(s) 133, 593, 886, 1062
Bst6I CTCTTC 4 cut(s) 554, 623, 776, 1380
BstACI GRCGYC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 4 cut(s) 1038, 1169, 1216, 1419
BstDEI CTNAG 2 cut(s) 1097, 1320
BstDSI CCRYGG 2 cut(s) 129, 823
BstENI CCTNNNNNAGG 2 cut(s) 1041, 1272
BstF5I GGATG 7 cut(s) 38, 628, 691, 724, 783, 862, 955
BstFNI CGCG 4 cut(s) 161, 249, 297, 817
BstHHI GCGC 1 cut(s) 297
BstMAI GTCTC 2 cut(s) 261, 1173
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 471, 1258, 1418
BstNI CCWGG 3 cut(s) 15, 342, 844
BstSCI CCNGG 7 cut(s) 13, 210, 252, 340, 405, 406, 842
BstUI CGCG 4 cut(s) 161, 249, 297, 817
BstV1I GCAGC 3 cut(s) 1198, 1303, 1431
BstV2I GAAGAC 5 cut(s) 150, 836, 968, 1031, 1350
BstX2I RGATCY 2 cut(s) 1105, 1158
BstYI RGATCY 2 cut(s) 1105, 1158
BstZ17I GTATAC 2 cut(s) 507, 699
BsuRI GGCC 6 cut(s) 18, 123, 746, 847, 866, 1147
BtgI CCRYGG 2 cut(s) 129, 823
BtsCI GGATG 7 cut(s) 38, 628, 691, 724, 783, 862, 955
BtsI GCAGTG 1 cut(s) 1288
BtsIMutI CAGTG 1 cut(s) 1288
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 4 cut(s) 1038, 1169, 1216, 1419
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 133, 214, 745, 1145
Cfr9I CCCGGG 1 cut(s) 406
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 678, 721
CviAII CATG 5 cut(s) 824, 910, 1071, 1164, 1414
CviQI GTAC 2 cut(s) 678, 721
DdeI CTNAG 2 cut(s) 1097, 1320
DraIII CACNNNGTG 1 cut(s) 1046
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 4 cut(s) 554, 623, 776, 1380
EarI CTCTTC 4 cut(s) 554, 623, 776, 1380
Eco130I CCWWGG 2 cut(s) 823, 1468
Eco24I GRGCYC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 133, 214
Eco88I CYCGRG 2 cut(s) 406, 1109
EcoNI CCTNNNNNAGG 2 cut(s) 1041, 1272
EcoO109I RGGNCCY 2 cut(s) 745, 1145
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 3 cut(s) 13, 340, 842
EcoT14I CCWWGG 2 cut(s) 823, 1468
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 2 cut(s) 823, 1468
Esp3I CGTCTC 2 cut(s) 261, 1173
FaeI CATG 5 cut(s) 827, 913, 1074, 1167, 1417
FalI AAGNNNNNCTT 2 cut(s) 1422, 1454
FaqI GGGAC 3 cut(s) 197, 227, 1102
FatI CATG 5 cut(s) 823, 909, 1070, 1163, 1413
FauI CCCGC 2 cut(s) 254, 1176
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 2 cut(s) 506, 698
Fnu4HI GCNGC 7 cut(s) 159, 293, 451, 671, 1212, 1317, 1445
FokI GGATG 7 cut(s) 25, 635, 698, 711, 790, 869, 962
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 7 cut(s) 159, 293, 451, 671, 1212, 1317, 1445
FspBI CTAG 5 cut(s) 447, 675, 1043, 1272, 1418
GlaI GCGC 1 cut(s) 296
GluI GCNGC 7 cut(s) 159, 293, 451, 671, 1212, 1317, 1445
HaeIII GGCC 6 cut(s) 18, 123, 746, 847, 866, 1147
HapII CCGG 4 cut(s) 211, 254, 407, 432
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 5 cut(s) 827, 913, 1074, 1167, 1417
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 6 cut(s) 262, 819, 839, 964, 986, 1055
HpaII CCGG 4 cut(s) 211, 254, 407, 432
Hpy166II GTNNAC 2 cut(s) 507, 699
Hpy188I TCNGA 5 cut(s) 64, 261, 991, 1098, 1323
Hpy188III TCNNGA 9 cut(s) 166, 194, 241, 266, 320, 1109, 1272, 1430, 1494
Hpy8I GTNNAC 2 cut(s) 507, 699
HpyAV CCTTC 9 cut(s) 54, 298, 541, 559, 787, 1079, 1136, 1278, 1448
HpyCH4III ACNGT 4 cut(s) 133, 593, 886, 1062
HpyCH4IV ACGT 2 cut(s) 659, 766
HpyCH4V TGCA 7 cut(s) 770, 890, 896, 1040, 1214, 1340, 1447
HpyF10VI GCNNNNNNNGC 3 cut(s) 471, 1258, 1418
HpyF3I CTNAG 2 cut(s) 1097, 1320
HpySE526I ACGT 2 cut(s) 659, 766
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 5 cut(s) 827, 913, 1074, 1167, 1417
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 487
LmnI GCTCC 1 cut(s) 213
Lsp1109I GCAGC 3 cut(s) 1198, 1303, 1431
LweI GCATC 2 cut(s) 847, 1430
MaeI CTAG 5 cut(s) 447, 675, 1043, 1272, 1418
MaeII ACGT 2 cut(s) 659, 766
MaeIII GTNAC 2 cut(s) 307, 1385
MbiI CCGCTC 1 cut(s) 292
MfeI CAATTG 1 cut(s) 1341
MflI RGATCY 2 cut(s) 1105, 1158
MhlI GDGCHC 1 cut(s) 476
MlyI GAGTC 1 cut(s) 958
MmeI TCCRAC 2 cut(s) 642, 1083
MroXI GAANNNNTTC 1 cut(s) 1374
MseI TTAA 2 cut(s) 609, 801
MspI CCGG 4 cut(s) 211, 254, 407, 432
MspR9I CCNGG 7 cut(s) 15, 212, 254, 342, 407, 408, 844
MunI CAATTG 1 cut(s) 1341
Mva1269I GAATGC 1 cut(s) 1342
MvaI CCWGG 3 cut(s) 15, 342, 844
MvnI CGCG 4 cut(s) 161, 249, 297, 817
MwoI GCNNNNNNNGC 3 cut(s) 471, 1258, 1418
NciI CCSGG 4 cut(s) 212, 254, 407, 408
NcoI CCATGG 1 cut(s) 823
NheI GCTAGC 1 cut(s) 1417
NlaIII CATG 5 cut(s) 827, 913, 1074, 1167, 1417
NlaIV GGNNCC 3 cut(s) 215, 747, 1160
NmeAIII GCCGAG 1 cut(s) 892
NspV TTCGAA 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 1109
PaqCI CACCTGC 1 cut(s) 881
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 228
PctI GAATGC 1 cut(s) 1342
PdmI GAANNNNTTC 1 cut(s) 1374
PfeI GAWTC 5 cut(s) 262, 819, 839, 986, 1055
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 7 cut(s) 160, 294, 452, 672, 1213, 1318, 1446
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
PshBI ATTAAT 1 cut(s) 801
Psp1406I AACGTT 1 cut(s) 659
Psp6I CCWGG 3 cut(s) 13, 340, 842
PspGI CCWGG 3 cut(s) 13, 340, 842
PspN4I GGNNCC 3 cut(s) 215, 747, 1160
PspPI GGNCC 4 cut(s) 133, 214, 745, 1145
PsuI RGATCY 2 cut(s) 1105, 1158
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 2 cut(s) 679, 722
RsaNI GTAC 2 cut(s) 678, 721
SaqAI TTAA 2 cut(s) 609, 801
SatI GCNGC 7 cut(s) 159, 293, 451, 671, 1212, 1317, 1445
Sau96I GGNCC 4 cut(s) 133, 214, 745, 1145
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 7 cut(s) 15, 212, 254, 342, 407, 408, 844
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 2 cut(s) 847, 1430
Sfr274I CTCGAG 1 cut(s) 1109
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 2 cut(s) 133, 214
SlaI CTCGAG 1 cut(s) 1109
SmaI CCCGGG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 117, 1109
SmoI CTYRAG 2 cut(s) 117, 1109
SspI AATATT 1 cut(s) 538
SspMI CTAG 5 cut(s) 447, 675, 1043, 1272, 1418
StyD4I CCNGG 7 cut(s) 13, 210, 252, 340, 405, 406, 842
StyI CCWWGG 2 cut(s) 823, 1468
TaaI ACNGT 4 cut(s) 133, 593, 886, 1062
TaiI ACGT 2 cut(s) 662, 769
TatI WGTACW 1 cut(s) 677
TauI GCSGC 4 cut(s) 161, 295, 453, 673
TfiI GAWTC 5 cut(s) 262, 819, 839, 986, 1055
Tru1I TTAA 2 cut(s) 609, 801
Tru9I TTAA 2 cut(s) 609, 801
TscAI CASTG 1 cut(s) 1288
TseI GCWGC 3 cut(s) 1211, 1316, 1444
TspDTI ATGAA 5 cut(s) 156, 393, 794, 1068, 1383
TspGWI ACGGA 1 cut(s) 602
TspMI CCCGGG 1 cut(s) 406
TspRI CASTG 1 cut(s) 1288
VpaK11BI GGWCC 2 cut(s) 133, 214
VspI ATTAAT 1 cut(s) 801
XagI CCTNNNNNAGG 2 cut(s) 1041, 1272
XapI RAATTY 3 cut(s) 88, 380, 709
XbaI TCTAGA 1 cut(s) 1271
XhoI CTCGAG 1 cut(s) 1109
XmaI CCCGGG 1 cut(s) 406
XmiI GTMKAC 2 cut(s) 506, 698
XmnI GAANNNNTTC 1 cut(s) 1374
XspI CTAG 5 cut(s) 447, 675, 1043, 1272, 1418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.