Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012401

Physical Location & Seq

Genomic Coordinates Forward (+)

6300276 .. 6305656

Gene Structure 5381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGGGAGACGAAGACCGTACATTCGCCATTGGTGACGTACGCTTCCATGCTATCGCTGCTTTCTCTCTGCCCTCCCTTTGTAATTCTACTATGGTATACAATGGTACATGCTGATGGCTCTATTCTGCAAACTTGGGATCACTTGAGGCAGCATGGACTGCAAGGGTTCATCGAAATCTGGCCCAGACCTACTGCCACTGCATGGAAGATTATTGCCTGTTACGGTGCTTTTGAGGCTGCACTTCAGCTTCTTTTACCTGGAAAAAGGGTTGAGGGACCAATATCTCCAGCAGGGAATCGGCCTGTATACAAGGCAAATGGTATGGCAGCCTATTTTGTAACGTTGACTACCTACCTTGGCCTTTGGTGGTTTGGGATATTCAACCCTACAGTTGTTTATGATCATCTGGGAGAAATATTTTCAGCACTCATTTTCGGAAGCTTCATTTTTTGTATTTTCCTGTACATAAAAGGCCATGTGGCACCATCTTCCACTGATTCTGGATCATCTGGGAATGCAATAATTGATTTCTATTGGGGCATGGAATTGTATCCTCGAATTGGCAAATACTTTGATATCAAAGTATTCACAAACTGCAGATTTGGGATGATGTCTTGGGCAGTTCTTGCTGTGACTTATTGCATAAAGCAGTATGAAGTCAATGGGAGAGTAGCTGACTCAATGCTTGTGAATACTATATTGATGCTGGTGTATGTCACAAAGTTTTTCTGGTGGGAGGCTGGATACTGGAATACAATGGATATCGCACATCGATCGAGCGGGATTCTATATTTGCTGGGGTTGCTTGGTCTGGGTTCCATCTATTTACACTTCTCCCGGCATGTACCTGGTCAACCATCCTGTAAATCTTGGTACTCAGCACTTTTTATTCTGGTGGCCGGAATCCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGCAGAACTAATGGAAAATGCTTGGTTTGGGGGAGAGCTCCATCAAAGATAGTCGCTTCATACACTACCACATCTGGGGAAACAAAGACAAGCCTTCTTCTAACCTCAGGATGGTGGGGTTTATCTCGTCACTTCCATTATGTGCCAGAAATATCAGCTGCCTTTTTCTGGACTGTTCCAGCCCTCTTCAATCATTTTCTACCTTACTTCTACGTGATTTTCCTGACAATCCTTCTGCTTGACCGAGCAAAGAGGGATGATGACCGATGTCGCACTAAGTACGGCAAATACTGGAAGTCATATTGTCAGAAGGTTCCCTACAGGGTTGTTCCCGGAATCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009918 GO:0010817 GO:0012505 GO:0016020 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016627 GO:0031984 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

434

Amino Acids

49.56

Weight (kDa)

9.13

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERG4_ERG24	PF01222	40 - 433	9.8e-79	Ergosterol biosynthesis ERG4/ERG24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50430 AT1G50430
fragaria_vesca	FvH4_6g37020 FvH4_6g37020 FvH4_6g37020
malus_domestica	MD09G1164900.v1.1 MD17G1163300.v1.1
prunus_persica	Prupe.3G022300_v2.0.a1 Prupe.3G022300_v2.0.a1
pyrus_communis	pycom09g08210
rosa_chinensis	RchiOBHm_Chr2g0149571
rosa_laevigata	RLG00000020424
rosa_multiflora	Rmu_sc0006867.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097980
rosa_rugosa	Rorug02G0412400
rosa_samantha	Rh2AG473000 Rh2BG484900 Rh2DG494100
rosa_wichuraiana	Rw2G038550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	783
AccI	GTMKAC	2 cut(s)	98, 309
AciI	CCGC	1 cut(s)	783
AclI	AACGTT	1 cut(s)	344
AclWI	GGATC	2 cut(s)	147, 514
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	1 cut(s)	953
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	7 cut(s)	21, 41, 108, 467, 849, 878, 1238
AfiI	CCNNNNNNNGG	5 cut(s)	204, 563, 1032, 1068, 1125
AgsI	TTSAA	2 cut(s)	385, 1147
AjnI	CCWGG	2 cut(s)	259, 850
AluBI	AGCT	5 cut(s)	250, 444, 677, 995, 1115
AluI	AGCT	5 cut(s)	250, 444, 677, 995, 1115
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	147, 514
AoxI	GGCC	5 cut(s)	182, 302, 361, 475, 900
ApeKI	GCWGC	5 cut(s)	58, 151, 239, 329, 1115
ApoI	RAATTY	1 cut(s)	953
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspS9I	GGNCC	2 cut(s)	183, 278
AsuC2I	CCSGG	2 cut(s)	841, 1290
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	1063
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	997
BarI	GAAGNNNNNNTAC	2 cut(s)	1259, 1291
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	5 cut(s)	45, 163, 226, 341, 1102
BccI	CCATC	6 cut(s)	110, 496, 830, 868, 1006, 1062
BceAI	ACGGC	1 cut(s)	1255
BcgI	CGANNNNNNTGC	4 cut(s)	759, 793, 938, 972
BciT130I	CCWGG	2 cut(s)	261, 852
BciVI	GTATCC	2 cut(s)	564, 740
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	841, 1290
BcoDI	GTCTC	1 cut(s)	2
BfmI	CTRYAG	3 cut(s)	390, 598, 1276
BfuI	GTATCC	2 cut(s)	564, 740
BisI	GCNGC	5 cut(s)	59, 152, 240, 330, 1116
BlsI	GCNGC	5 cut(s)	60, 153, 241, 331, 1117
Bme1390I	CCNGG	4 cut(s)	261, 841, 852, 1290
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	183, 278
BmiI	GGNNCC	4 cut(s)	279, 486, 820, 1272
BmrFI	CCNGG	4 cut(s)	261, 841, 852, 1290
BmsI	GCATC	1 cut(s)	696
BoxI	GACNNNNGTC	1 cut(s)	1224
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	841, 1290
Bsa29I	ATCGAT	1 cut(s)	775
BsaAI	YACGTR	1 cut(s)	1171
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 563, 1032, 1068, 1125
Bse1I	ACTGG	2 cut(s)	755, 1253
Bse21I	CCTNAGG	1 cut(s)	1063
BseBI	CCWGG	2 cut(s)	261, 852
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	4 cut(s)	615, 860, 1073, 1219
BseLI	CCNNNNNNNGG	5 cut(s)	204, 563, 1032, 1068, 1125
BseMII	CTCAG	2 cut(s)	894, 1077
BseNI	ACTGG	2 cut(s)	755, 1253
BseXI	GCAGC	5 cut(s)	45, 163, 226, 341, 1102
BseYI	CCCAGC	1 cut(s)	799
BsgI	GTGCAG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	779
BshFI	GGCC	5 cut(s)	184, 304, 363, 477, 902
BshNI	GGYRCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	775
BsiEI	CGRYCG	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	997
BsiSI	CCGG	3 cut(s)	841, 903, 1290
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	5 cut(s)	204, 563, 1032, 1068, 1125
BsmAI	GTCTC	1 cut(s)	2
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	5 cut(s)	184, 304, 363, 477, 902
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	139, 403, 506, 776
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	5 cut(s)	184, 304, 363, 477, 902
BspCNI	CTCAG	2 cut(s)	893, 1076
BspDI	ATCGAT	1 cut(s)	775
BspLI	GGNNCC	4 cut(s)	279, 486, 820, 1272
BspMAI	CTGCAG	1 cut(s)	602
BspPI	GGATC	2 cut(s)	147, 514
BspT107I	GGYRCC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	783
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	755, 1253
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	4 cut(s)	139, 403, 506, 776
BssNAI	GTATAC	2 cut(s)	99, 310
BssT1I	CCWWGG	1 cut(s)	358
Bst1107I	GTATAC	2 cut(s)	99, 310
Bst2UI	CCWGG	2 cut(s)	261, 852
Bst4CI	ACNGT	4 cut(s)	19, 227, 394, 1132
Bst6I	CTCTTC	1 cut(s)	1148
BstAPI	GCANNNNNTGC	2 cut(s)	160, 629
BstAUI	TGTACA	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	1171
BstDEI	CTNAG	3 cut(s)	880, 1063, 1233
BstF5I	GGATG	4 cut(s)	615, 860, 1073, 1219
BstKTI	GATC	4 cut(s)	142, 406, 509, 779
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	139, 403, 506, 776
BstMCI	CGRYCG	1 cut(s)	779
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 160, 236, 629, 805
BstNI	CCWGG	2 cut(s)	261, 852
BstNSI	RCATGY	2 cut(s)	113, 848
BstPAI	GACNNNNGTC	1 cut(s)	1224
BstSCI	CCNGG	4 cut(s)	259, 839, 850, 1288
BstSFI	CTRYAG	3 cut(s)	390, 598, 1276
BstV1I	GCAGC	5 cut(s)	45, 163, 226, 341, 1102
BstV2I	GAAGAC	1 cut(s)	20
BstZ17I	GTATAC	2 cut(s)	99, 310
Bsu15I	ATCGAT	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	1063
BsuI	GTATCC	2 cut(s)	564, 740
BsuRI	GGCC	5 cut(s)	184, 304, 363, 477, 902
BsuTUI	ATCGAT	1 cut(s)	775
BtsCI	GGATG	4 cut(s)	615, 860, 1073, 1219
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 495
Cfr13I	GGNCC	2 cut(s)	183, 278
ClaI	ATCGAT	1 cut(s)	775
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	7 cut(s)	20, 40, 107, 466, 848, 877, 1237
CviAII	CATG	7 cut(s)	49, 110, 155, 204, 479, 544, 845
CviQI	GTAC	7 cut(s)	20, 40, 107, 466, 848, 877, 1237
DdeI	CTNAG	3 cut(s)	880, 1063, 1233
DpnI	GATC	4 cut(s)	141, 405, 508, 778
DpnII	GATC	4 cut(s)	139, 403, 506, 776
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	1 cut(s)	1148
EarI	CTCTTC	1 cut(s)	1148
Ecl136II	GAGCTC	1 cut(s)	995
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	997
Eco32I	GATATC	2 cut(s)	580, 766
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	995
Eco57I	CTGAAG	1 cut(s)	230
Eco81I	CCTNAGG	1 cut(s)	1063
EcoICRI	GAGCTC	1 cut(s)	995
EcoRII	CCWGG	2 cut(s)	259, 850
EcoRV	GATATC	2 cut(s)	580, 766
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	997
ErhI	CCWWGG	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	7 cut(s)	52, 113, 158, 207, 482, 547, 848
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	7 cut(s)	48, 109, 154, 203, 478, 543, 844
FauI	CCCGC	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	2 cut(s)	98, 309
Fnu4HI	GCNGC	5 cut(s)	59, 152, 240, 330, 1116
FokI	GGATG	4 cut(s)	622, 847, 1080, 1226
FriOI	GRGCYC	1 cut(s)	997
Fsp4HI	GCNGC	5 cut(s)	59, 152, 240, 330, 1116
GluI	GCNGC	5 cut(s)	59, 152, 240, 330, 1116
GsaI	CCCAGC	1 cut(s)	803
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	5 cut(s)	184, 304, 363, 477, 902
HapII	CCGG	3 cut(s)	841, 903, 1290
Hin1II	CATG	7 cut(s)	52, 113, 158, 207, 482, 547, 848
HincII	GTYRAC	2 cut(s)	348, 857
HindII	GTYRAC	2 cut(s)	348, 857
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	6 cut(s)	298, 500, 680, 787, 906, 1293
HpaII	CCGG	3 cut(s)	841, 903, 1290
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	99, 310, 348, 857
Hpy188I	TCNGA	2 cut(s)	440, 1266
Hpy188III	TCNNGA	4 cut(s)	504, 1065, 1126, 1180
Hpy8I	GTNNAC	4 cut(s)	99, 310, 348, 857
HpyAV	CCTTC	3 cut(s)	1061, 1199, 1261
HpyCH4III	ACNGT	4 cut(s)	19, 227, 394, 1132
HpyCH4IV	ACGT	3 cut(s)	38, 344, 1170
HpyCH4V	TGCA	8 cut(s)	130, 163, 203, 242, 521, 600, 645, 915
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 160, 236, 629, 805
HpyF3I	CTNAG	3 cut(s)	880, 1063, 1233
HpySE526I	ACGT	3 cut(s)	38, 344, 1170
Hsp92II	CATG	7 cut(s)	52, 113, 158, 207, 482, 547, 848
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	139, 403, 506, 776
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	5 cut(s)	45, 163, 226, 341, 1102
LweI	GCATC	1 cut(s)	696
MabI	ACCWGGT	1 cut(s)	850
MaeII	ACGT	3 cut(s)	38, 344, 1170
MaeIII	GTNAC	7 cut(s)	34, 221, 340, 634, 718, 935, 1085
MalI	GATC	4 cut(s)	141, 405, 508, 778
MbiI	CCGCTC	1 cut(s)	783
MboI	GATC	4 cut(s)	139, 403, 506, 776
MboII	GAAGA	5 cut(s)	25, 220, 483, 1046, 1135
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	5 cut(s)	84, 525, 548, 561, 953
MlyI	GAGTC	1 cut(s)	674
MnlI	CCTC	9 cut(s)	84, 141, 229, 268, 567, 733, 1072, 1151, 1203
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	1115
MspI	CCGG	3 cut(s)	841, 903, 1290
MspR9I	CCNGG	4 cut(s)	261, 841, 852, 1290
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	2 cut(s)	261, 852
MwoI	GCNNNNNNNGC	5 cut(s)	58, 160, 236, 629, 805
NciI	CCSGG	2 cut(s)	841, 1290
NdeII	GATC	4 cut(s)	139, 403, 506, 776
NlaIII	CATG	7 cut(s)	52, 113, 158, 207, 482, 547, 848
NlaIV	GGNNCC	4 cut(s)	279, 486, 820, 1272
NmuCI	GTSAC	5 cut(s)	34, 634, 718, 935, 1085
NspI	RCATGY	2 cut(s)	113, 848
PctI	GAATGC	1 cut(s)	523
PfeI	GAWTC	5 cut(s)	298, 500, 787, 906, 1293
Pfl23II	CGTACG	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	1288
PkrI	GCNGC	5 cut(s)	60, 153, 241, 331, 1117
Ple19I	CGATCG	1 cut(s)	779
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	1171
PshAI	GACNNNNGTC	1 cut(s)	1224
Psp124BI	GAGCTC	1 cut(s)	997
Psp1406I	AACGTT	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	259, 850
PspFI	CCCAGC	1 cut(s)	799
PspGI	CCWGG	2 cut(s)	259, 850
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	4 cut(s)	279, 486, 820, 1272
PspPI	GGNCC	2 cut(s)	183, 278
PstI	CTGCAG	1 cut(s)	602
PvuI	CGATCG	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	7 cut(s)	21, 41, 108, 467, 849, 878, 1238
RsaNI	GTAC	7 cut(s)	20, 40, 107, 466, 848, 877, 1237
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	997
SatI	GCNGC	5 cut(s)	59, 152, 240, 330, 1116
Sau3AI	GATC	4 cut(s)	139, 403, 506, 776
Sau96I	GGNCC	2 cut(s)	183, 278
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	4 cut(s)	261, 841, 852, 1290
SduI	GDGCHC	1 cut(s)	997
SexAI	ACCWGGT	1 cut(s)	850
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	3 cut(s)	390, 598, 1276
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	5 cut(s)	84, 525, 548, 561, 953
SsiI	CCGC	1 cut(s)	783
SspI	AATATT	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	997
StyD4I	CCNGG	4 cut(s)	259, 839, 850, 1288
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	4 cut(s)	19, 227, 394, 1132
TaiI	ACGT	3 cut(s)	41, 347, 1173
TaqI	TCGA	4 cut(s)	174, 559, 775, 779
TaqII	GACCGA	2 cut(s)	1215, 1236
TasI	AATT	5 cut(s)	84, 525, 548, 561, 953
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	5 cut(s)	298, 500, 787, 906, 1293
TscAI	CASTG	2 cut(s)	205, 502
TseFI	GTSAC	5 cut(s)	34, 634, 718, 935, 1085
TseI	GCWGC	5 cut(s)	58, 151, 239, 329, 1115
Tsp45I	GTSAC	5 cut(s)	34, 634, 718, 935, 1085
TspDTI	ATGAA	4 cut(s)	160, 436, 672, 1005
TspRI	CASTG	2 cut(s)	205, 502
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	953
XceI	RCATGY	2 cut(s)	113, 848
XmiI	GTMKAC	2 cut(s)	98, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.