Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008809

Physical Location & Seq

Genomic Coordinates Reverse (-)

10855648 .. 10856822

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCTGACCTTATAGACACCGTTGATTTAGATGATTATGATTACCACGTGACCAATGCTGCAACTGACAACCCAAGTGATCAAGTCATCACAAACTTAACAGCACCAGCACCCCAACTAATTGATGATTTATTTGGAGATGGCCCAGGGACTGCCGGAAGCACCAGTGAACTAAAAAATGATGATGACCCTTTTGCAGATGTCTCGTTTCACACTAATGACAGTAAAGAACCAGCAGATGATCTCTTCTCTGGGCTTACCATTGATAATAAACTAGATCCTCATGAGAATTTCGTGGCAGAAGAGAAAAGTGGAACTGAAATGTTTGATATATTTGGGCCCAATTCTGAACTTCTGCAGGAGCAAGATCATAAAAATGATTTAAGCAATTTAATGGGTGGTTTATCCATTGATAAAAATGTCCCAAAGATGGAGCAGAAAGGAACCCCTCCTGGACAACTATCCGAACTTTTGTCGGATTCAACTAGTCATCCCAGCCGTCTGGCCTCCAGCAATGATTGGAGTGGCATTCTTAATTCTCAAACAGCCCTGCCGAATGGAAATGCAGTGTTACCTCCTGGTGGTATGCCTTACAATATACCTCCTGGAGTTATGTTCAATCCAGCCTTTCCTTCTCAGCCAATAAATTATGGTGCCATGGGAAATCTTCTTGCTCAGCAGCAATTCCTAGCGACAATGTCTGGCTTTCAACACTTTGGAAACCTCAGTGCGCAAAATATGAATTTAAGTAATGTTGCTGGAACAAATGGAGGATATGCTTCTGCACTTCCGGATATTTTCCATGCAAATCAACCAAATCCAGCTCCCGGTGCGGTGGTGAACAGTTCAAAGAAAGAGGATACCAAAGCATTTGATTTTATCTCGGACCATATTGCTGCAGCCCGTGATCCAAAGAGGGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031982 GO:0031984 GO:0034622 GO:0035459 GO:0035652 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0065003 GO:0071840 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ENTH

Protein Analysis

309

Amino Acids

32.88

Weight (kDa)

4.24

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16270 AT3G16270 AT3G16270
fragaria_vesca	FvH4_6g32000
malus_domestica	MD09G1207100.v1.1 MD17G1187800.v1.1
prunus_persica	Prupe.3G063200_v2.0.a1 Prupe.3G063200_v2.0.a1
pyrus_communis	pycom09g12350 pycom17g19670
rosa_chinensis	RchiOBHm_Chr2g0139591 RchiOBHm_Chr2g0139601
rosa_laevigata	RLG00000019821
rosa_multiflora	Rmu_sc0003427.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105370
rosa_rugosa	Rorug02G0358500 Rorug02G0358600 Rorug02G0358600
rosa_samantha	Rh2AG408400 Rh2BG419000 Rh2CG394400 Rh2DG428100
rosa_wichuraiana	Rw2G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	653
AccIII	TCCGGA	1 cut(s)	790
AciI	CCGC	1 cut(s)	833
AclWI	GGATC	2 cut(s)	272, 902
AcsI	RAATTY	2 cut(s)	289, 742
AcvI	CACGTG	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	430, 581, 827
AgsI	TTSAA	4 cut(s)	483, 619, 710, 849
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	4 cut(s)	145, 451, 577, 604
AluBI	AGCT	1 cut(s)	824
AluI	AGCT	1 cut(s)	824
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	272, 902
AlwNI	CAGNNNCTG	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	3 cut(s)	142, 338, 504
ApaI	GGGCCC	1 cut(s)	342
ApeKI	GCWGC	4 cut(s)	59, 679, 896, 899
ApoI	RAATTY	2 cut(s)	289, 742
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	4 cut(s)	143, 338, 339, 886
AsuC2I	CCSGG	1 cut(s)	828
AsuHPI	GGTGA	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	342
BbrPI	CACGTG	1 cut(s)	49
BbvI	GCAGC	4 cut(s)	46, 691, 883, 911
BccI	CCATC	2 cut(s)	134, 424
BceAI	ACGGC	1 cut(s)	483
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	4 cut(s)	147, 453, 579, 606
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	828
BcoDI	GTCTC	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	3 cut(s)	275, 486, 689
BfmI	CTRYAG	2 cut(s)	356, 897
BfuI	GTATCC	1 cut(s)	853
BisI	GCNGC	4 cut(s)	60, 680, 897, 900
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	4 cut(s)	61, 681, 898, 901
Bme1390I	CCNGG	5 cut(s)	147, 453, 579, 606, 828
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	4 cut(s)	143, 338, 339, 886
BmiI	GGNNCC	3 cut(s)	340, 445, 655
BmrFI	CCNGG	5 cut(s)	147, 453, 579, 606, 828
BpmI	CTGGAG	2 cut(s)	493, 627
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	145, 146, 657
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 581, 827
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	520
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	4 cut(s)	147, 453, 579, 606
BseDI	CCNNGG	3 cut(s)	145, 146, 657
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	3 cut(s)	430, 581, 827
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	650, 689, 739
BseNI	ACTGG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	4 cut(s)	46, 691, 883, 911
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	3 cut(s)	144, 340, 506
BshNI	GGYRCC	1 cut(s)	653
BsiSI	CCGG	3 cut(s)	156, 791, 828
BslFI	GGGAC	2 cut(s)	163, 407
BslI	CCNNNNNNNGG	3 cut(s)	430, 581, 827
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	163, 407
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	144, 340, 506
Bsp120I	GGGCCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	5 cut(s)	79, 241, 277, 367, 907
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	1 cut(s)	833
BspANI	GGCC	3 cut(s)	144, 340, 506
BspCNI	CTCAG	3 cut(s)	649, 688, 738
BspEI	TCCGGA	1 cut(s)	790
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	340, 445, 655
BspMAI	CTGCAG	2 cut(s)	360, 901
BspPI	GGATC	2 cut(s)	272, 902
BspT107I	GGYRCC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	145, 146, 657
BssMI	GATC	5 cut(s)	79, 241, 277, 367, 907
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	4 cut(s)	147, 453, 579, 606
Bst4CI	ACNGT	3 cut(s)	22, 224, 845
Bst6I	CTCTTC	2 cut(s)	251, 297
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	636, 675, 725
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	5 cut(s)	82, 244, 280, 370, 910
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	5 cut(s)	79, 241, 277, 367, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	4 cut(s)	147, 453, 579, 606
BstSCI	CCNGG	5 cut(s)	145, 451, 577, 604, 826
BstSFI	CTRYAG	2 cut(s)	356, 897
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	46, 691, 883, 911
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	144, 340, 506
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	3 cut(s)	172, 573, 733
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	4 cut(s)	143, 338, 339, 886
CviAII	CATG	3 cut(s)	284, 658, 803
DdeI	CTNAG	3 cut(s)	636, 675, 725
DpnI	GATC	5 cut(s)	81, 243, 279, 369, 909
DpnII	GATC	5 cut(s)	79, 241, 277, 367, 907
Eam1104I	CTCTTC	2 cut(s)	251, 297
EarI	CTCTTC	2 cut(s)	251, 297
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	886
Eco72I	CACGTG	1 cut(s)	49
EcoRII	CCWGG	4 cut(s)	145, 451, 577, 604
EcoT14I	CCWWGG	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	3 cut(s)	287, 661, 806
FaqI	GGGAC	2 cut(s)	163, 407
FatI	CATG	3 cut(s)	283, 657, 802
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	60, 680, 897, 900
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	60, 680, 897, 900
FspBI	CTAG	3 cut(s)	275, 486, 689
FspI	TGCGCA	1 cut(s)	732
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	4 cut(s)	60, 680, 897, 900
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	2 cut(s)	493, 627
HaeIII	GGCC	3 cut(s)	144, 340, 506
HapII	CCGG	3 cut(s)	156, 791, 828
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	3 cut(s)	287, 661, 806
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	3 cut(s)	156, 791, 828
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	2 cut(s)	170, 841
Hpy188I	TCNGA	4 cut(s)	349, 466, 478, 886
Hpy188III	TCNNGA	2 cut(s)	284, 791
Hpy8I	GTNNAC	2 cut(s)	170, 841
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	3 cut(s)	22, 224, 845
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	7 cut(s)	62, 197, 358, 566, 785, 806, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	3 cut(s)	636, 675, 725
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	287, 661, 806
HspAI	GCGC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 241, 277, 367, 907
LmnI	GCTCC	3 cut(s)	361, 433, 829
Lsp1109I	GCAGC	4 cut(s)	46, 691, 883, 911
MaeI	CTAG	3 cut(s)	275, 486, 689
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	49, 570
MalI	GATC	5 cut(s)	81, 243, 279, 369, 909
MboI	GATC	5 cut(s)	79, 241, 277, 367, 907
MboII	GAAGA	3 cut(s)	238, 314, 659
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	8 cut(s)	120, 289, 343, 388, 535, 646, 683, 742
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	9 cut(s)	291, 459, 517, 585, 612, 734, 764, 850, 909
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	6 cut(s)	98, 383, 392, 534, 746, 925
MslI	CAYNNNNRTG	2 cut(s)	216, 375
MspI	CCGG	3 cut(s)	156, 791, 828
MspR9I	CCNGG	5 cut(s)	147, 453, 579, 606, 828
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	4 cut(s)	147, 453, 579, 606
MwoI	GCNNNNNNNGC	1 cut(s)	830
NciI	CCSGG	1 cut(s)	828
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	5 cut(s)	79, 241, 277, 367, 907
NlaIII	CATG	3 cut(s)	287, 661, 806
NlaIV	GGNNCC	3 cut(s)	340, 445, 655
NmuCI	GTSAC	1 cut(s)	49
NsbI	TGCGCA	1 cut(s)	732
PagI	TCATGA	1 cut(s)	283
PasI	CCCWGGG	1 cut(s)	146
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	697
PfoI	TCCNGGA	2 cut(s)	451, 604
PkrI	GCNGC	4 cut(s)	61, 681, 898, 901
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	4 cut(s)	145, 451, 577, 604
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	4 cut(s)	145, 451, 577, 604
PspN4I	GGNNCC	3 cut(s)	340, 445, 655
PspOMI	GGGCCC	1 cut(s)	338
PspPI	GGNCC	4 cut(s)	143, 338, 339, 886
PstI	CTGCAG	2 cut(s)	360, 901
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	697
RseI	CAYNNNNRTG	2 cut(s)	216, 375
SaqAI	TTAA	6 cut(s)	98, 383, 392, 534, 746, 925
SatI	GCNGC	4 cut(s)	60, 680, 897, 900
Sau3AI	GATC	5 cut(s)	79, 241, 277, 367, 907
Sau96I	GGNCC	4 cut(s)	143, 338, 339, 886
ScrFI	CCNGG	5 cut(s)	147, 453, 579, 606, 828
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	6 cut(s)	12, 51, 577, 604, 726, 826
SfcI	CTRYAG	2 cut(s)	356, 897
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	2 cut(s)	216, 375
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	8 cut(s)	120, 289, 343, 388, 535, 646, 683, 742
SsiI	CCGC	1 cut(s)	833
SspMI	CTAG	3 cut(s)	275, 486, 689
StyD4I	CCNGG	5 cut(s)	145, 451, 577, 604, 826
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	3 cut(s)	22, 224, 845
TaiI	ACGT	1 cut(s)	51
TasI	AATT	8 cut(s)	120, 289, 343, 388, 535, 646, 683, 742
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	6 cut(s)	98, 383, 392, 534, 746, 925
Tru9I	TTAA	6 cut(s)	98, 383, 392, 534, 746, 925
TscAI	CASTG	3 cut(s)	172, 573, 733
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	4 cut(s)	59, 679, 896, 899
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	755
TspRI	CASTG	3 cut(s)	172, 573, 733
Tth111I	GACNNNGTC	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	886
XapI	RAATTY	2 cut(s)	289, 742
XspI	CTAG	3 cut(s)	275, 486, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.