Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008809

Physical Location & Seq

Genomic Coordinates Forward (+)

57137593 .. 57141738

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAACATATTTGCACACATAATCTTAAGATTCTTTTATGTGCGCATGAAAGCTATCTGTGTTCTTGAGTCAATATTGAGGAGAAAGGATGATGAGAATTTCTCAATTATTGAATCCTATTTTATTGAGAACAGAGATGCTGTAGCGAGATGCTCAGAGTCTCCCCAAGCTTCTTTGCGAGAAAAGGCTAACAAGGTTATAAACCTCTTAGGTGGAGAACAGACAGGAAGTGTGGCAGGTAATTCTGAAGAGCGTGGGAAGGCTCAGACTACTGCCGTTGTTCAGATGCCTGACCTGATAGACACTGGTGATCTAGATGATTACCATGGAACAGATGCTGCAGAGAACCAAAATGAGCAAGTCATCGCAAACTTAACTGCACCACCCCAACTAATAGATGATTTATTTGGAGATGCCCAAGTGAATGTCGTAAGCACCAGTGAACTGAAAAATGAGGATGATCCCTTTGCTGATGTCTCATTCCACACTAATGAAAGTAAAGAACATGTAGATGATCTCTTCTCTGGGCTTACGATTGATGATAAACTAGATGCTCAGGAGGATGCTATCGGAGGACAGAAAAATGGATCCGAAATATTTGATATTTTTGGTCCTAATCCTGAACTTCTTCATGAGCAAGATCATACTAATAATTTGAACAATTTAATGGTTGGTTTATCTATTGATAAAGATGCCTCTAAGATGGAGCAAAAGGGAACCTCTCCTGGAATAGTATCTGATAGTCTTTTGTCAGACTCAAGTAGTCAACCCAGCCATCAGGTCTCCACGAATGCTTGGAGTGGAATTCTCAATTCTCAAACAGAACGGGCAAGTGAAACTCCAATATTTCCTCCAGGTGCTATTCCTTACAATGTACCTCCTGGCTTTATGTTCAACCCAGCCTTTTCTTCTCAGCCAATAAATTATGGTGCCATGGGAAGTCTCTTTGCTCAGCAGCAATTCCTAGCGACAATGTCTAATTTCCAACACCTTGGGAACCTCAATGCTCAAAATCCAAACTTAAGTCAAGTTGCTGGAACAAATGGAGGATATAATCCAGCACTTCCTGATATATTCCAGGCAAATCATCTGAATCAAGCTCCTAGTTCAATGATGAACAGTGCCAAGAAAGAGGATAGCAAAGCGTTTGATTTTATCTCAGACCATATTGCTGCTGCTCGTGATCCCAAGAGGGTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031982 GO:0031984 GO:0034622 GO:0035459 GO:0035652 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0065003 GO:0071840 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ENTH

Protein Analysis

400

Amino Acids

43.61

Weight (kDa)

4.54

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16270 AT3G16270 AT3G16270
fragaria_vesca	FvH4_6g32000
malus_domestica	MD09G1207100.v1.1 MD17G1187800.v1.1
prunus_persica	Prupe.3G063200_v2.0.a1 Prupe.3G063200_v2.0.a1
pyrus_communis	pycom09g12350 pycom17g19670
rosa_chinensis	RchiOBHm_Chr2g0139591 RchiOBHm_Chr2g0139601
rosa_laevigata	RLG00000019821
rosa_multiflora	Rmu_sc0003427.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105370
rosa_rugosa	Rorug02G0358500 Rorug02G0358600 Rorug02G0358600
rosa_samantha	Rh2AG408400 Rh2BG419000 Rh2CG394400 Rh2DG428100
rosa_wichuraiana	Rw2G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
Acc16I	TGCGCA	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	929
AclWI	GGATC	4 cut(s)	455, 582, 595, 1178
AcsI	RAATTY	2 cut(s)	97, 804
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	1 cut(s)	876
AflII	CTTAAG	2 cut(s)	25, 1021
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	113, 658, 895, 1110
AjnI	CCWGG	4 cut(s)	724, 853, 880, 1077
AluBI	AGCT	3 cut(s)	53, 170, 1100
AluI	AGCT	3 cut(s)	53, 170, 1100
Alw26I	GTCTC	4 cut(s)	165, 481, 787, 947
AlwI	GGATC	4 cut(s)	455, 582, 595, 1178
AlwNI	CAGNNNCTG	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	338, 955, 1172, 1175
ApoI	RAATTY	2 cut(s)	97, 804
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	929
BauI	CACGAG	1 cut(s)	1179
BbvI	GCAGC	4 cut(s)	325, 967, 1159, 1162
BccI	CCATC	2 cut(s)	697, 783
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	4 cut(s)	726, 855, 882, 1079
BcoDI	GTCTC	4 cut(s)	165, 481, 787, 947
BfaI	CTAG	4 cut(s)	314, 548, 965, 1104
BfmI	CTRYAG	2 cut(s)	141, 339
BfrI	CTTAAG	2 cut(s)	25, 1021
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	339, 956, 1173, 1176
BlpI	GCTNAGC	1 cut(s)	951
BlsI	GCNGC	4 cut(s)	340, 957, 1174, 1177
Bme1390I	CCNGG	4 cut(s)	726, 855, 882, 1079
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	4 cut(s)	589, 718, 931, 998
BmrFI	CCNGG	4 cut(s)	726, 855, 882, 1079
BmsI	GCATC	8 cut(s)	127, 140, 276, 325, 403, 541, 553, 682
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	2 cut(s)	86, 742
BsaI	GGTCTC	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	325, 933, 991
Bse1I	ACTGG	2 cut(s)	310, 438
BseBI	CCWGG	4 cut(s)	726, 855, 882, 1079
BseDI	CCNNGG	3 cut(s)	325, 933, 991
BseGI	GGATG	3 cut(s)	94, 463, 568
BseMII	CTCAG	6 cut(s)	168, 278, 569, 926, 965, 1173
BseNI	ACTGG	2 cut(s)	310, 438
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	325, 967, 1159, 1162
BseYI	CCCAGC	2 cut(s)	770, 898
BsgI	GTGCAG	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	929
BsmAI	GTCTC	4 cut(s)	165, 481, 787, 947
BsmI	GAATGC	1 cut(s)	796
Bso31I	GGTCTC	1 cut(s)	787
Bsp143I	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
Bsp1720I	GCTNAGC	1 cut(s)	951
Bsp19I	CCATGG	2 cut(s)	325, 933
BspCNI	CTCAG	6 cut(s)	167, 277, 568, 925, 964, 1172
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	4 cut(s)	589, 718, 931, 998
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	4 cut(s)	455, 582, 595, 1178
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	929
BspTI	CTTAAG	2 cut(s)	25, 1021
BspTNI	GGTCTC	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	310, 438
BssECI	CCNNGG	3 cut(s)	325, 933, 991
BssMI	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
BssSI	CACGAG	1 cut(s)	1179
BssT1I	CCWWGG	3 cut(s)	325, 933, 991
Bst2BI	CACGAG	1 cut(s)	1179
Bst2UI	CCWGG	4 cut(s)	726, 855, 882, 1079
Bst4CI	ACNGT	1 cut(s)	1121
Bst6I	CTCTTC	2 cut(s)	243, 524
BstAFI	CTTAAG	2 cut(s)	25, 1021
BstDEI	CTNAG	8 cut(s)	154, 208, 264, 555, 699, 912, 951, 1159
BstDSI	CCRYGG	2 cut(s)	325, 933
BstF5I	GGATG	3 cut(s)	94, 463, 568
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	313, 463, 517, 590, 643, 1186
BstMAI	GTCTC	4 cut(s)	165, 481, 787, 947
BstMBI	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
BstNI	CCWGG	4 cut(s)	726, 855, 882, 1079
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	4 cut(s)	724, 853, 880, 1077
BstSFI	CTRYAG	2 cut(s)	141, 339
BstV1I	GCAGC	4 cut(s)	325, 967, 1159, 1162
BstX2I	RGATCY	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	1 cut(s)	587
BtgI	CCRYGG	2 cut(s)	325, 933
BtgZI	GCGATG	1 cut(s)	349
BtsCI	GGATG	3 cut(s)	94, 463, 568
BtsIMutI	CAGTG	3 cut(s)	303, 445, 1126
BveI	ACCTGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	875
CviAII	CATG	5 cut(s)	46, 326, 506, 632, 934
CviQI	GTAC	1 cut(s)	875
DdeI	CTNAG	8 cut(s)	154, 208, 264, 555, 699, 912, 951, 1159
DpnI	GATC	6 cut(s)	312, 462, 516, 589, 642, 1185
DpnII	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
Eam1104I	CTCTTC	2 cut(s)	243, 524
EarI	CTCTTC	2 cut(s)	243, 524
Eco130I	CCWWGG	3 cut(s)	325, 933, 991
Eco31I	GGTCTC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	804
EcoRII	CCWGG	4 cut(s)	724, 853, 880, 1077
EcoT14I	CCWWGG	3 cut(s)	325, 933, 991
ErhI	CCWWGG	3 cut(s)	325, 933, 991
FaeI	CATG	5 cut(s)	49, 329, 509, 635, 937
FatI	CATG	5 cut(s)	45, 325, 505, 631, 933
Fnu4HI	GCNGC	4 cut(s)	339, 956, 1173, 1176
FokI	GGATG	3 cut(s)	101, 470, 575
Fsp4HI	GCNGC	4 cut(s)	339, 956, 1173, 1176
FspAI	RTGCGCAY	1 cut(s)	44
FspBI	CTAG	4 cut(s)	314, 548, 965, 1104
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	4 cut(s)	339, 956, 1173, 1176
GsaI	CCCAGC	2 cut(s)	774, 902
GsuI	CTGGAG	1 cut(s)	837
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	49, 329, 509, 635, 937
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	767
HindII	GTYRAC	1 cut(s)	767
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	6 cut(s)	30, 68, 113, 158, 755, 1093
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	443, 767
Hpy188III	TCNNGA	7 cut(s)	65, 314, 557, 620, 632, 1067, 1181
Hpy8I	GTNNAC	2 cut(s)	443, 767
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	1121
HpyCH4V	TGCA	3 cut(s)	14, 341, 380
HpyF3I	CTNAG	8 cut(s)	154, 208, 264, 555, 699, 912, 951, 1159
Hsp92II	CATG	5 cut(s)	49, 329, 509, 635, 937
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	706, 1105
Lsp1109I	GCAGC	4 cut(s)	325, 967, 1159, 1162
LweI	GCATC	8 cut(s)	127, 140, 276, 325, 403, 541, 553, 682
MaeI	CTAG	4 cut(s)	314, 548, 965, 1104
MalI	GATC	6 cut(s)	312, 462, 516, 589, 642, 1185
MboI	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
MboII	GAAGA	4 cut(s)	260, 511, 620, 900
MflI	RGATCY	1 cut(s)	587
MlyI	GAGTC	3 cut(s)	77, 167, 749
MmeI	TCCRAC	1 cut(s)	1009
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	4 cut(s)	26, 374, 665, 1022
MslI	CAYNNNNRTG	2 cut(s)	489, 510
MspCI	CTTAAG	2 cut(s)	25, 1021
MspR9I	CCNGG	4 cut(s)	726, 855, 882, 1079
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	4 cut(s)	726, 855, 882, 1079
NcoI	CCATGG	2 cut(s)	325, 933
NdeII	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
NlaIII	CATG	5 cut(s)	49, 329, 509, 635, 937
NlaIV	GGNNCC	4 cut(s)	589, 718, 931, 998
NsbI	TGCGCA	1 cut(s)	44
NspI	RCATGY	1 cut(s)	509
PagI	TCATGA	1 cut(s)	631
PciI	ACATGT	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	30, 113, 1093
PflFI	GACNNNGTC	1 cut(s)	973
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	4 cut(s)	340, 957, 1174, 1177
PleI	GAGTC	3 cut(s)	76, 166, 749
PpsI	GAGTC	3 cut(s)	76, 166, 749
PscI	ACATGT	1 cut(s)	505
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	4 cut(s)	724, 853, 880, 1077
PspFI	CCCAGC	2 cut(s)	770, 898
PspGI	CCWGG	4 cut(s)	724, 853, 880, 1077
PspN4I	GGNNCC	4 cut(s)	589, 718, 931, 998
PspPI	GGNCC	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	587
PsyI	GACNNNGTC	1 cut(s)	973
RsaI	GTAC	1 cut(s)	876
RsaNI	GTAC	1 cut(s)	875
RseI	CAYNNNNRTG	2 cut(s)	489, 510
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	26, 374, 665, 1022
SatI	GCNGC	4 cut(s)	339, 956, 1173, 1176
Sau3AI	GATC	6 cut(s)	310, 460, 514, 587, 640, 1183
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	3 cut(s)	77, 167, 749
ScrFI	CCNGG	4 cut(s)	726, 855, 882, 1079
SfaNI	GCATC	8 cut(s)	127, 140, 276, 325, 403, 541, 553, 682
SfcI	CTRYAG	2 cut(s)	141, 339
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	2 cut(s)	489, 510
SmlI	CTYRAG	4 cut(s)	25, 65, 757, 1021
SmoI	CTYRAG	4 cut(s)	25, 65, 757, 1021
SspI	AATATT	3 cut(s)	75, 597, 846
SspMI	CTAG	4 cut(s)	314, 548, 965, 1104
StyD4I	CCNGG	4 cut(s)	724, 853, 880, 1077
StyI	CCWWGG	3 cut(s)	325, 933, 991
TaaI	ACNGT	1 cut(s)	1121
TfiI	GAWTC	3 cut(s)	30, 113, 1093
Tru1I	TTAA	4 cut(s)	26, 374, 665, 1022
Tru9I	TTAA	4 cut(s)	26, 374, 665, 1022
TscAI	CASTG	3 cut(s)	310, 445, 1126
TseI	GCWGC	4 cut(s)	338, 955, 1172, 1175
TspDTI	ATGAA	5 cut(s)	17, 62, 507, 620, 1130
TspRI	CASTG	3 cut(s)	310, 445, 1126
Tth111I	GACNNNGTC	1 cut(s)	973
Vha464I	CTTAAG	2 cut(s)	25, 1021
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	2 cut(s)	97, 804
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	4 cut(s)	314, 548, 965, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.