Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008809

Physical Location & Seq

Genomic Coordinates Forward (+)

45291060 .. 45302980

Gene Structure 11921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0358600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGAATATATCTGAGCGCTCCGAAAACCGATAAGGTGTCAGAAGATGGTGAGAATGATAGACTGCGATTTGGGGCTTCCTCCATGCAGGGGTGGCGTTCAACCATGGAAGATGCTCATGCTGCTTTTCCAGATCTCGACAATTCAACATCTTTCTTTGGTGTTTATGATGGTCATGGAGGTAAAGCGGTGGCAAATTTCTGTGCCAAGTATCTCCACTTACAAGTGCTCAACCAGGAAGCATATCTAGCTGGTGATTTAGGCACTTCCCTGCAGAAAACTTTTCTCAGGATGGATGAGATGATGCGTGGACAGAGAGGATGGAGAGAACTAGCTGTATTGGGAGATAAGATAGACAAAGTTTCAGGCCTTATTGAAGGGTTCATCTTTTCTCCTAAGAGTGTTGAAGCTAAGAGAAGTGCATTCAATGATCAAATTGATCAGTGGTCTTCTGAGGAGGGGCCTCACTCTGATTTTGATGGACCAAACTCTGGAAGCACAGCTTGTGTTGCTATCATCCGAAACAATCAACTTGTTGTTGCCAATGCTGGTGATTCGCGTTGTGTAATATCGAGGAAGGGTCAGGCATATCCTTTGTCTAAAGATCATAAGCCTGACATTGAGAATGAGAAGGATAGAATTCTGAAGGCCGGTGGATTTATCCAAGTTGGACGGGTCAATGGAAGTTTGAACTTGGCAAGAGCGATCGGAGATGTGGAATTCAAGCAAAACAAACAATTGCCTGTTGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAAGTGTTGAGATTTGTGATGATGATGAGTTTCTTGTCATCGCTTGTGATGGGATATGGGACTGCATGTCAAACCAACAACTTGTGGATTATGTTGGGGAACAATTGAAACATGAAAGTAAACTCTCGGTGGTTTGTGAGAGAGTGTTTGAAAGGTGCTTGGCACCCTCGACAGGTGGAGAAGGCTGTGACAACATGACAATGATCTTGGTTCAGTTTAAGAAGCCTATTATTTCAACTGCTTCTACTGGGAACAAGCCTCTTTCGTCTAATCCATCACCTGAGGACAAAAGCTCGGGAAAAGCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031982 GO:0031984 GO:0034622 GO:0035459 GO:0035652 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0065003 GO:0071840 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ENTH

Protein Analysis

363

Amino Acids

39.66

Weight (kDa)

5.15

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	23 - 104	3.3e-12	Protein phosphatase 2C
PP2C	PF00481	136 - 318	2.7e-60	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16270 AT3G16270 AT3G16270
fragaria_vesca	FvH4_6g32000
malus_domestica	MD09G1207100.v1.1 MD17G1187800.v1.1
prunus_persica	Prupe.3G063200_v2.0.a1 Prupe.3G063200_v2.0.a1
pyrus_communis	pycom09g12350 pycom17g19670
rosa_chinensis	RchiOBHm_Chr2g0139591 RchiOBHm_Chr2g0139601
rosa_laevigata	RLG00000019821
rosa_multiflora	Rmu_sc0003427.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105370
rosa_rugosa	Rorug02G0358500 Rorug02G0358600 Rorug02G0358600
rosa_samantha	Rh2AG408400 Rh2BG419000 Rh2CG394400 Rh2DG428100
rosa_wichuraiana	Rw2G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	943
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccII	CGCG	1 cut(s)	559
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	3 cut(s)	196, 639, 719
AcuI	CTGAAG	1 cut(s)	665
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	3 cut(s)	90, 491, 953
AhdI	GACNNNNNGTC	1 cut(s)	847
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	251, 335, 410, 503, 1074, 1085
AluI	AGCT	6 cut(s)	251, 335, 410, 503, 1074, 1085
Alw21I	GWGCWC	1 cut(s)	231
Ama87I	CYCGRG	1 cut(s)	1075
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	3 cut(s)	367, 461, 648
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	196, 639, 719
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	461, 482
AsuHPI	GGTGA	4 cut(s)	62, 266, 563, 1050
AvaI	CYCGRG	1 cut(s)	1075
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	1062
BanI	GGYRCC	1 cut(s)	943
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	7 cut(s)	41, 164, 286, 315, 473, 824, 1063
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	2 cut(s)	430, 439
BfaI	CTAG	2 cut(s)	248, 332
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	21
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	482
BmeRI	GACNNNNNGTC	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	1075
BmgT120I	GGNCC	2 cut(s)	461, 482
BmiI	GGNNCC	2 cut(s)	462, 945
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	1038
BmsI	GCATC	2 cut(s)	103, 294
BmuI	ACTGGG	1 cut(s)	1038
BpiI	GAAGAC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 491, 953
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	1033
Bse21I	CCTNAGG	1 cut(s)	1062
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	4 cut(s)	297, 301, 326, 516
BseLI	CCNNNNNNNGG	3 cut(s)	90, 491, 953
BseMII	CTCAG	4 cut(s)	5, 301, 444, 1053
BseNI	ACTGG	1 cut(s)	1033
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	559
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	369, 463, 650
BshNI	GGYRCC	1 cut(s)	943
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	1075
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	90, 491, 953
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	369, 463, 650
BsoBI	CYCGRG	1 cut(s)	1075
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	3 cut(s)	369, 463, 650
BspCNI	CTCAG	4 cut(s)	6, 300, 445, 1054
BspFNI	CGCG	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	462, 945
BspMAI	CTGCAG	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	943
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	1033
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	236
BstDEI	CTNAG	6 cut(s)	14, 287, 396, 411, 453, 1062
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	4 cut(s)	297, 301, 326, 516
BstFNI	CGCG	1 cut(s)	559
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	6 cut(s)	136, 433, 442, 607, 708, 987
BstMBI	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 122, 248, 509
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	559
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuRI	GGCC	3 cut(s)	369, 463, 650
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	805
BtsCI	GGATG	4 cut(s)	297, 301, 326, 516
BtsIMutI	CAGTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	461, 482
CviAII	CATG	7 cut(s)	85, 106, 119, 176, 847, 893, 976
DdeI	CTNAG	6 cut(s)	14, 287, 396, 411, 453, 1062
DpnI	GATC	6 cut(s)	135, 432, 441, 606, 707, 986
DpnII	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
DriI	GACNNNNNGTC	1 cut(s)	847
Eam1105I	GACNNNNNGTC	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	665
Eco81I	CCTNAGG	1 cut(s)	1062
Eco88I	CYCGRG	1 cut(s)	1075
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	2 cut(s)	639, 719
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	7 cut(s)	88, 109, 122, 179, 850, 896, 979
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	7 cut(s)	84, 105, 118, 175, 846, 892, 975
FbaI	TGATCA	2 cut(s)	430, 439
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	4 cut(s)	304, 308, 333, 503
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	248, 332
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	369, 463, 650
HapII	CCGG	1 cut(s)	651
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	7 cut(s)	88, 109, 122, 179, 850, 896, 979
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	554
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	4 cut(s)	62, 266, 563, 1050
Hpy166II	GTNNAC	2 cut(s)	311, 902
Hpy188I	TCNGA	8 cut(s)	15, 24, 43, 454, 472, 521, 645, 710
Hpy188III	TCNNGA	6 cut(s)	131, 137, 289, 492, 773, 1077
Hpy8I	GTNNAC	2 cut(s)	311, 902
HpyAV	CCTTC	5 cut(s)	371, 571, 625, 640, 956
HpyCH4V	TGCA	4 cut(s)	88, 274, 422, 846
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 122, 248, 509
HpyF3I	CTNAG	6 cut(s)	14, 287, 396, 411, 453, 1062
Hsp92II	CATG	7 cut(s)	88, 109, 122, 179, 850, 896, 979
HspAI	GCGC	1 cut(s)	18
Ksp22I	TGATCA	2 cut(s)	430, 439
Kzo9I	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	103, 294
MaeI	CTAG	2 cut(s)	248, 332
MaeIII	GTNAC	3 cut(s)	760, 778, 968
MalI	GATC	6 cut(s)	135, 432, 441, 606, 707, 986
MboI	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
MboII	GAAGA	3 cut(s)	56, 122, 441
MfeI	CAATTG	2 cut(s)	737, 884
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	7 cut(s)	142, 196, 435, 639, 719, 737, 884
MmeI	TCCRAC	1 cut(s)	649
MseI	TTAA	1 cut(s)	999
MslI	CAYNNNNRTG	1 cut(s)	980
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	2 cut(s)	737, 884
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	559
MwoI	GCNNNNNNNGC	4 cut(s)	94, 122, 248, 509
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
NlaIII	CATG	7 cut(s)	88, 109, 122, 179, 850, 896, 979
NlaIV	GGNNCC	2 cut(s)	462, 945
NmuCI	GTSAC	1 cut(s)	968
NspI	RCATGY	1 cut(s)	850
PceI	AGGCCT	1 cut(s)	369
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	124
Ple19I	CGATCG	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	462, 945
PspPI	GGNCC	2 cut(s)	461, 482
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	708
RseI	CAYNNNNRTG	1 cut(s)	980
SaqAI	TTAA	1 cut(s)	999
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	6 cut(s)	133, 430, 439, 604, 705, 984
Sau96I	GGNCC	2 cut(s)	461, 482
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	103, 294
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	980
Sse9I	AATT	7 cut(s)	142, 196, 435, 639, 719, 737, 884
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	248, 332
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	3 cut(s)	138, 572, 950
TasI	AATT	7 cut(s)	142, 196, 435, 639, 719, 737, 884
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	999
Tru9I	TTAA	1 cut(s)	999
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	2 cut(s)	373, 909
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	3 cut(s)	196, 639, 719
XceI	RCATGY	1 cut(s)	850
XspI	CTAG	2 cut(s)	248, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.