pycom09g14480

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002799
Physical Location & Seq
Reverse (-)
14101944 .. 14105384
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14480.1

Sequence Viewer

Length: 621 bp
ATGATGAGTGTCCGTATAGTACTTAATGACTGTGTTGGTTTTGCGGGACCACTCATTCTCAATAAACTGATTCGCTTCCTTCAACAAGGTTCGAAGAATATTGATGGCTATGTTCTTGCAATATGCTTGGGCCTTGTATCTATTTTGAAATCAGTTTTGGATACGCAATATACCTTTCATCTTTCAAGACTGAAGTTAAAGTTACGATCTAGTATCATTACTATTATCTATCAGAAGTGCTTAAGTATCAATCTAGCAGAACGATCAAAATTTACTGAGGGAGAAATCCAGACATTCATGGCTGTAGATTCTGATCGTACTGTCAACTTGTGTAACAGTTTCCATGATATGTGGAGCTTGCCATTACAAATTGGGGTGGCTTTGTTCCTTCTGTATACACAAGTCAAGTTTGCATTTGTTTCTGGTGTTGCAATTACCATCGCATTGATACCAGTGAATAAATGGATATCTACATTGATTGCAAGTGCTACAATGAAAATGATGCAGCAGAAGGATGAGAGGTATATGTACTTTTTTACCTTACTTTTTACACTTGGTCTGAACATAGTGATTGCATCCATAGAAAGCATATTAGTATTACAGTTGATCTTGAAAGCTTAA

Protein Analysis

207

Amino Acids

23.21

Weight (kDa)

9.34

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 6 - 176 3.3e-12 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 395
AciI CCGC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 3 cut(s) 21, 319, 530
AflII CTTAAG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 83, 148, 186, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 357, 617
AluI AGCT 2 cut(s) 357, 617
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 47, 130
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 517
BccI CCATC 2 cut(s) 98, 446
BciVI GTATCC 1 cut(s) 154
BfaI CTAG 2 cut(s) 210, 254
BfmI CTRYAG 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 241
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
BmcAI AGTACT 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 47, 130
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 2 cut(s) 492, 584
Bpu14I TTCGAA 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 312
BseGI GGATG 2 cut(s) 520, 575
BseJI GATNNNNATC 1 cut(s) 312
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 517
BshFI GGCC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 92
Bsp143I GATC 4 cut(s) 206, 263, 313, 606
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 452
BssMI GATC 4 cut(s) 206, 263, 313, 606
BssNAI GTATAC 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 396
Bst4CI ACNGT 4 cut(s) 32, 322, 338, 603
BstAFI CTTAAG 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 520, 575
BstKTI GATC 4 cut(s) 209, 266, 316, 609
BstMBI GATC 4 cut(s) 206, 263, 313, 606
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 517
BstZ17I GTATAC 1 cut(s) 396
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 2 cut(s) 520, 575
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 47, 130
Csp6I GTAC 3 cut(s) 20, 318, 529
CviAII CATG 2 cut(s) 298, 344
CviJI RGCY 6 cut(s) 108, 132, 302, 357, 380, 617
CviKI_1 RGCY 6 cut(s) 108, 132, 302, 357, 380, 617
CviQI GTAC 3 cut(s) 20, 318, 529
DdeI CTNAG 1 cut(s) 276
DpnI GATC 4 cut(s) 208, 265, 315, 608
DpnII GATC 4 cut(s) 206, 263, 313, 606
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 212
EcoRV GATATC 1 cut(s) 468
FaeI CATG 2 cut(s) 301, 347
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 297, 343
FauI CCCGC 1 cut(s) 37
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 2 cut(s) 527, 562
Fsp4HI GCNGC 1 cut(s) 506
FspBI CTAG 2 cut(s) 210, 254
GluI GCNGC 1 cut(s) 506
HaeIII GGCC 1 cut(s) 132
Hin1II CATG 2 cut(s) 301, 347
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 2 cut(s) 70, 308
Hpy166II GTNNAC 2 cut(s) 325, 396
Hpy188I TCNGA 3 cut(s) 234, 313, 561
Hpy188III TCNNGA 3 cut(s) 186, 289, 610
Hpy8I GTNNAC 2 cut(s) 325, 396
HpyAV CCTTC 3 cut(s) 89, 398, 505
HpyCH4III ACNGT 4 cut(s) 32, 322, 338, 603
HpyCH4V TGCA 6 cut(s) 119, 413, 431, 482, 505, 575
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 2 cut(s) 301, 347
Kzo9I GATC 4 cut(s) 206, 263, 313, 606
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 3 cut(s) 302, 408, 465
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 492, 584
MaeI CTAG 2 cut(s) 210, 254
MaeIII GTNAC 2 cut(s) 201, 332
MalI GATC 4 cut(s) 208, 265, 315, 608
MboI GATC 4 cut(s) 206, 263, 313, 606
MboII GAAGA 1 cut(s) 106
MluCI AATT 3 cut(s) 269, 369, 432
MnlI CCTC 2 cut(s) 271, 513
MseI TTAA 4 cut(s) 24, 197, 242, 619
MspCI CTTAAG 1 cut(s) 241
NdeII GATC 4 cut(s) 206, 263, 313, 606
NlaIII CATG 2 cut(s) 301, 347
NlaIV GGNNCC 1 cut(s) 48
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 2 cut(s) 70, 308
PkrI GCNGC 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 2 cut(s) 47, 130
RsaI GTAC 3 cut(s) 21, 319, 530
RsaNI GTAC 3 cut(s) 20, 318, 529
SaqAI TTAA 4 cut(s) 24, 197, 242, 619
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 4 cut(s) 206, 263, 313, 606
Sau96I GGNCC 2 cut(s) 47, 130
ScaI AGTACT 1 cut(s) 21
SetI ASST 6 cut(s) 91, 176, 359, 524, 542, 619
SfaNI GCATC 2 cut(s) 492, 584
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 3 cut(s) 269, 369, 432
SsiI CCGC 1 cut(s) 44
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 210, 254
TaaI ACNGT 4 cut(s) 32, 322, 338, 603
TaqI TCGA 1 cut(s) 92
TasI AATT 3 cut(s) 269, 369, 432
TatI WGTACW 2 cut(s) 19, 528
TfiI GAWTC 2 cut(s) 70, 308
Tru1I TTAA 4 cut(s) 24, 197, 242, 619
Tru9I TTAA 4 cut(s) 24, 197, 242, 619
TscAI CASTG 1 cut(s) 459
TseI GCWGC 1 cut(s) 505
TspDTI ATGAA 3 cut(s) 167, 286, 509
TspRI CASTG 1 cut(s) 459
Vha464I CTTAAG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 210, 254
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.