Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002799

Physical Location & Seq

Genomic Coordinates Reverse (-)

14106938 .. 14110596

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATAGTTGGGCTCGGAATAACACAACGGACTGGCAGAAGAAGTTGGAGGATGAACTTCATGGAAAAGCTTTTCTGGCTCTTTCTTCCTGCCATTGGAGCATGCATATCATTTTTAGACAGTGCATTACTGTTGAAGAAAGCGCTTCATGGCATCTTTGTCGCACATCATGAATGGTTTTTCAGATGTTCTCAATTTGCATCATGGACACTTATCATACTGTTCTCAAAGTATTTCAATGGTTGTCAAATTTTCTGCAACCGGATCTTGTGTTTCTGGTGGATTATAAAACTTCTTCTGGGAATACTTCATTTGCTCACAGCATATCCTCCATTCAAGGTCTTATTATGTGTTACTGTTACATTGGACACGATCTTTGGTGTATCGATTAACATTATCAGAATAAAGCGGGCATCCTACAAGAGAAGTACACTTGAAGATTCACTACTTTCAGCTGACACAGATGTTGAGGAAGGCAGCCTTAATGATTCTGGAAACACTCAGGGCTATTTCGATCTTTTGACATTTAGATCTATCACTTCTGTGATGAATCATGGTGTCACAAAGCAGCTTGATTTTGAGGATTTGCTTCACCTTCCTTCTGATATGAATCCCTGTTCCTGTCATGACACATTGTTTGGCTGTTGGCAATCCCAACAGAGCAGTTCCCCTGATCCATCACTGTTTAGGGCAATATGTTGTGCATATGGATGGCCATACATTCGTTTGGGCTTGTTGAAGTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

250

Amino Acids

28.53

Weight (kDa)

8.64

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07680 AT2G07680 AT2G07680 AT2G07680 AT2G07680 AT2G07680
fragaria_vesca	FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590
malus_domestica	MD09G1225000.v1.1
prunus_persica	Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1
pyrus_communis	pycom09g14470 pycom09g14480 pycom09g14490
rosa_chinensis	RchiOBHm_Chr2g0132931
rosa_laevigata	RLG00000019292
rosa_multiflora	Rmu_sc0001314.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111610
rosa_rugosa	Rorug02G0308600
rosa_samantha	Rh2AG360900 Rh2BG366800 Rh2CG344200 Rh2DG383800
rosa_wichuraiana	Rw2G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	2 cut(s)	272, 668
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	430
AfeI	AGCGCT	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	5 cut(s)	136, 238, 337, 437, 739
AleI	CACNNNNGTG	1 cut(s)	542
AluBI	AGCT	3 cut(s)	70, 455, 571
AluI	AGCT	3 cut(s)	70, 455, 571
AlwI	GGATC	2 cut(s)	272, 668
Aor51HI	AGCGCT	1 cut(s)	144
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	477, 568
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	4 cut(s)	359, 391, 620, 652
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BbvI	GCAGC	2 cut(s)	489, 580
BccI	CCATC	2 cut(s)	685, 705
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BfoI	RGCGCY	1 cut(s)	146
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	2 cut(s)	478, 569
BlsI	GCNGC	2 cut(s)	479, 570
BmsI	GCATC	3 cut(s)	162, 209, 422
Bsa29I	ATCGAT	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	609
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	609
BseCI	ATCGAT	1 cut(s)	386
BseGI	GGATG	3 cut(s)	57, 413, 716
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	489, 580
BshFI	GGCC	1 cut(s)	715
BshVI	ATCGAT	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	264, 372, 514, 530, 673
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	1 cut(s)	514
BspDI	ATCGAT	1 cut(s)	386
BspHI	TCATGA	2 cut(s)	169, 625
BspPI	GGATC	2 cut(s)	272, 668
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	5 cut(s)	264, 372, 514, 530, 673
Bst4CI	ACNGT	5 cut(s)	122, 132, 222, 358, 684
BstC8I	GCNNGC	2 cut(s)	103, 411
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	3 cut(s)	57, 413, 716
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	5 cut(s)	267, 375, 517, 533, 676
BstMBI	GATC	5 cut(s)	264, 372, 514, 530, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 98
BstNSI	RCATGY	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	489, 580
BstX2I	RGATCY	2 cut(s)	264, 530
BstYI	RGATCY	2 cut(s)	264, 530
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	715
BsuTUI	ATCGAT	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	57, 413, 716
BtsIMutI	CAGTG	2 cut(s)	127, 680
Cac8I	GCNNGC	2 cut(s)	103, 411
CciI	TCATGA	2 cut(s)	169, 625
CfoI	GCGC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	7 cut(s)	61, 102, 149, 170, 204, 554, 626
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	5 cut(s)	266, 374, 516, 532, 675
DpnII	GATC	5 cut(s)	264, 372, 514, 530, 673
EaeI	YGGCCR	1 cut(s)	713
Eco24I	GRGCYC	1 cut(s)	15
Eco47III	AGCGCT	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	7 cut(s)	64, 105, 152, 173, 207, 557, 629
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	7 cut(s)	60, 101, 148, 169, 203, 553, 625
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	478, 569
FokI	GGATG	3 cut(s)	64, 400, 723
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	478, 569
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	478, 569
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	715
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	7 cut(s)	64, 105, 152, 173, 207, 557, 629
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	440, 488, 550, 610
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	17, 185, 401, 604
Hpy188III	TCNNGA	3 cut(s)	170, 492, 626
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	467, 605, 609
HpyCH4III	ACNGT	5 cut(s)	122, 132, 222, 358, 684
HpyCH4V	TGCA	5 cut(s)	105, 125, 200, 258, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 98
HpyF3I	CTNAG	1 cut(s)	501
Hsp92II	CATG	7 cut(s)	64, 105, 152, 173, 207, 557, 629
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	5 cut(s)	264, 372, 514, 530, 673
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	489, 580
LweI	GCATC	3 cut(s)	162, 209, 422
MaeIII	GTNAC	3 cut(s)	352, 358, 559
MalI	GATC	5 cut(s)	266, 374, 516, 532, 675
MboI	GATC	5 cut(s)	264, 372, 514, 530, 673
MboII	GAAGA	5 cut(s)	51, 77, 148, 287, 449
MflI	RGATCY	2 cut(s)	264, 530
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	715
MluCI	AATT	2 cut(s)	194, 249
MluNI	TGGCCA	1 cut(s)	715
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	42, 339, 463, 574
Mox20I	TGGCCA	1 cut(s)	715
Mph1103I	ATGCAT	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	715
MseI	TTAA	3 cut(s)	390, 483, 744
MslI	CAYNNNNRTG	2 cut(s)	542, 709
Msp20I	TGGCCA	1 cut(s)	715
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	76, 98
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	5 cut(s)	264, 372, 514, 530, 673
NlaIII	CATG	7 cut(s)	64, 105, 152, 173, 207, 557, 629
NmuCI	GTSAC	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	107
NspI	RCATGY	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	105
PagI	TCATGA	2 cut(s)	169, 625
PfeI	GAWTC	4 cut(s)	440, 488, 550, 610
PkrI	GCNGC	2 cut(s)	479, 570
PsiI	TTATAA	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	264, 530
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	542, 709
SaqAI	TTAA	3 cut(s)	390, 483, 744
SatI	GCNGC	2 cut(s)	478, 569
Sau3AI	GATC	5 cut(s)	264, 372, 514, 530, 673
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	72, 342, 457, 573, 597
SfaNI	GCATC	3 cut(s)	162, 209, 422
SmiMI	CAYNNNNRTG	2 cut(s)	542, 709
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	194, 249
SsiI	CCGC	1 cut(s)	409
TaaI	ACNGT	5 cut(s)	122, 132, 222, 358, 684
TaqI	TCGA	2 cut(s)	386, 513
TasI	AATT	2 cut(s)	194, 249
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	4 cut(s)	440, 488, 550, 610
Tru1I	TTAA	3 cut(s)	390, 483, 744
Tru9I	TTAA	3 cut(s)	390, 483, 744
TscAI	CASTG	2 cut(s)	127, 687
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	477, 568
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	7 cut(s)	49, 68, 137, 186, 299, 563, 623
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	127, 687
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.