Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002799

Physical Location & Seq

Genomic Coordinates Forward (+)

46270388 .. 46290937

Gene Structure 20550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG344200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4401 bp

ATGGACGATTTCACGAACCTGATCTGCCCTAATTCTCCTTCCGTGTGGGACGGAAATGGACTTTCCAAGTGCTACGGCAACATTCTGTTAGCTTTTGGTCCTAATATAGTCACTCTTGCTGTGATTTTCGTACTCGGAATCACTCCAAGGACCGGCAGAAGAACCTGGAGGATGAACTTTTCCGAGAGGTTTTTCTTGCACGTGCTTCCTGCCGTCGGAGCTTGTTCAGCATTTTTCGACATTGCTTTACTTTTAAAGAAAGGTCGTGGTGGTGTCTTGGTTGCAAAACATGAATGGTTGTTCAGATGTTCCCAGTTTGCTGTCTGGACAGTTGTCATACTCTTCTCAAGGTGTTTGAATGCTGGCCATATTTTTGGCAATCGCATCTTGTGTTTCTGGTGGCTTGTAAAAATGCTTTTGGCAACACTTCATTTGTTCACAACATATCCTTCATTCAAGGTCTTGTTATCTCTTAAGGAGATTGGTACTGTTTCATTGGACGTCATTTTTGGTATATCAATTAACATCATCGGAATGAAGAGGGCATCATCCAACAGAAGTTCAATGGAAGATTCACTACTTTCTGCTGACATGGACCTCGAGGAAGGTTCTCTCAAGGACTCTGGCGACAATCAGAGCTATTTCAATCTTATGACATTCAGATCGATCACTTCTGTGATGAGTCATGGTGTCACAAAGCAGCTTGAATTTGAAGATTTGCTTCAACTTCCCACTGATATGGACCCTTGTTCCTGTCATGATGCATTATTTAGCTGTTGGAAATCCCAACAGAGTAGTTGCCCTGATCCATCCCTGTTTAGGGCAATCTGTTCTGCATATGGATGGCCATACGTTCGTCTCGGCTTGTTAAAGGTACTTAATGATTCTGTTGGTTTTGCTGGACCGTTGCTTCTCAATAAGCTAATTCGCTTCCTTCAACAAGGTTCGCAGAATTTGGATGGCTATGTTCTTGCTGTATCGTTGGGCCTCATATCTATCTTTAAATCGTTTTTGGATACACAATATACTTTTCATCTTTCAAAATTGAAGTTAAAGCTACGATCTAGTATCATGACAGTTATATATCAGAAGTGCCTCTGTGTCAACCTAGCAGAGCGATCAAAGTTTACCGAGGGGGAAATTCAGACATTCATGGCCATAGATTCTGATCGCATTGTCAACTTAAGTAACACTCTCCATGATATGTGGAGCTTGCCTTTACAAATTGGGGTGGCTTTGTTCCTTTTGTATACACAAGTCAAATTTGCATTTGTTTCTGGGCTTGCAATTACCATCGCATTAATACCAGTGAATAAATGGATATCTACATTGATTGCAAGAGCTACAGTGAAAATGATGAAGCAGAAGGATGAGAGGATCAGAAGGACGGGGGAACTTTTGACATATATCCGCACTTTGAAAATGTATGGTTGGGAGCTCCTGTTTTCTAGCTGGTTGATGGAGACAAGATTATCAGAAGTTATGCACTTAACTACACGGAAGTACTTGGATGCCTGGTGTGTATTTTTTTGGGCCACAACACCAACTCTTTTTTCTCTTTGTACATTTGGACTTTTCACATTGATGGGGCATCAACTTGATGCTGCAACGGTCTTCACTTGTGTTGCTCTGTTTAATACTTTGATATCTCCTCTAAACTCATTTCCGTGGGTCATTAATGGGTTAATTGATGCTGTCATATCTGTCAGACGGTTGAGCAGGTTCCTGTCTTGCTCTGAGCGCAAGTCAAAGCTGGAAAAGATAGCTGATGCATCTTCACCATATTTCTCCAATGATCAGTGTGAATTTACCTTTGAAGATATGGCTGTTGTGTTTGATGATTCATCTTGTTCCTGGTCAAGCAGCGATGAAAAGGAATTGAATTTGGTGCTGAATCATGTAACTCTAGGTATTCCAAAGGGTTCCTTCATTGCAGTAATTGGAGAGGTTGGTTCAGGTAAAACATCATTGTTGAATTCCATATTGGGGGAAATGCAACTTGTCCATGGATCAGTATATTCTTGTGGATCTATAGCATATGTACCACAGGTCCCATGGATTCTGTCTGGAACAATCCGTGACAATATACTGTTTGGAAAGCAATACGATCCCAAAAGATACACAGATACTTTAGAGGCAAGTGCTTTAGACGTTGATATTTCAATAATGGTTGGAGGTGACATGGCTTATATTGGAGAAAAAGGAGTCAACTTGTCAGGTGGACAGAGAGCTCGAATTGCTCTGGCAAGGGCTATTTATAATGGCTCCGATATGTTTATTCTTGATGATGTCCTCAGCGCAGTTGATGCAAGAGTTGCTCGTTGTATTTTATACAATGCAATTTTGGGTCCACTAATGAAAAAGCAAACTCGTGTGCTTTGTACGCATAACGTTCAGGCAATATCTTCTGCTGATACAATTGTGGTTATGGAAAAAGGACATGTAAAGTGGGTGGGACCTTCTGCTTGTTTGCCAGCTTCTTCATATTCAGCATTCTCTCCACTGAATGAATTTGATAAATTCTTACTGAATGAAGGAAAAGAGTGCAATGTACCTGCAGATTCTCTCACAAAAGACCAACAAAACCTTCCCTTAGAGAAAGATATTGTGCCTGCTTCAGAGGGAAGACAAGATATTATTGAAGTTGAGGCACGGAAAGAGGGAAAAGTAGAACTTTCTGTCTACAAGAATTATGCCACGTTTACTGGTTGGTTCATTTCGGTTGTAATATTTCTATCAGCAATCCTAATGCAAGCTTCTCGTAATGGAAATGATCTGTGGCTGTCATATTGGGTTGATACAACAGGAAAGAGTCAGAAAGGATACTCTACATCCTTTTATCTGGTAATACTGTGCATCTTTTGTACTGCAAATTCAGTTCTTACATTAGTGAGGGCCTTCTCATTTGCATATGGCGGCGTACGAGCTGCAGTTAAGGTGCATGATACACTGCTGAAAAGGCTTATCAATGCACCTGTTCAATTCTTTGATCAGACACCAGGTGGAAGGATACTAAACAGGCTATCTTCAGATCTATACACAATTGATGATTCTCTTCCCTTCATTCTCAACATTCTCCTAGCTAATTTCGTTGGCCTTCTGGGAATTGCAATAGTTTTGTCATATGTTCAGGTCTTCTTCTTGCTTTTGCTATTGCCGTTTTGGTATATCTACACCAAACTTCAGTTCTTCTACAGGTCAACATCTCGAGAATTGCGAAGGCTGGACAGTGTGTCTCGGTCTCCCATATATACATCCTTCACAGAGACACTTGATGGATCATCAACTATACGGGCATTCAAGTCTGAGGACTTCTTTTTGGCCAGATTCACTGACCAGGTGAAATTGTATCAACAAACTTCCTACACAGAGTTAAATGCAAGTTTGTGGCTTTCCCTACGTCTTCAGTTGTCAGCAGCATTTATCATCTCATTTGTTGCTATTATGGCTGTTCTTGGATCTCATGGTGGATTACCAATCGGTTTCAGTACCCCAGGGCTGGTTGGTTTGGCTCTATCTTATGCAGCTCCGGTTGTAAATTTACTGGGAAGCTTTTTGACAAGTTTCACTGAAACAGAGAAGGAAATGGTTTCCATTGAAAGAGCTCTTGAGTATATGGAGGTTCCTCAAGAAGAAGTTGATGGACTTCAATCTTTAAACTGCAATTGGCCATTTCAAGGACGGATTGAATTCCAAAATGTTACCTTGAGATACAAGCCATCTTTTCCAGCTGCACTTTTTGATATTAGTTTTACTATTGACGGAGGGATGCAGGTTGGTATTGTTGGAAGGACAGGAGCTGGAAAATCTAGTGTTTTGAATGCCCTTTTCCGCCTCACACCAATATGCACAGGATGTATTCTTGTGGATGATATAAACATAGCTAATGCTCCTATCAGGGATCTTCGTGGGCATTTCTCTGTTGTTCCTCAGACTCCATTTTTATTTGAAGGATCATTAAGGGACAATCTGGATCCATTCAGGCTGAGTGATGACTATAAAATTTGGAAGGCTTTGGAGAAGTGCCATGTCAAAGAGGAAGTAGAAGCAGCAGGAGGTTTAGATATTCACCTAAGCGAATCTAGGATGTCATTTTCTGTAGGGCAACGGCAGCTTCTTTGCCTTGCACGTGCACTGCTCAAATCTTCAAAGGTGCTTTGTTTGGATGAATGCACAGCTAATGTGGACACTCAAACAGCATCTACCTTACAAAAAACCATATCTAGTGAATGCAGTGGCATGACAGTTATCACAATTGCTCATCGTATTTCCACCATTTTGAATATGGATAATGTCCTGATCCTCGACCATGGTATCCTGGTTGAACAAGGAAATCCGCAGGCTCTCCTACAAAATGAGTTCTCCAGATTTTCCAGTTTTGCTAAAGCATCTACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1466

Amino Acids

163.24

Weight (kDa)

7.02

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	288 - 552	3.1e-20	ABC transporter transmembrane region
ABC_tran	PF00005	631 - 764	8.4e-16	ABC transporter
ABC_membrane	PF00664	909 - 1157	6.6e-43	ABC transporter transmembrane region
ABC_tran	PF00005	1247 - 1393	1.7e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07680 AT2G07680 AT2G07680 AT2G07680 AT2G07680 AT2G07680
fragaria_vesca	FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590
malus_domestica	MD09G1225000.v1.1
prunus_persica	Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1
pyrus_communis	pycom09g14470 pycom09g14480 pycom09g14490
rosa_chinensis	RchiOBHm_Chr2g0132931
rosa_laevigata	RLG00000019292
rosa_multiflora	Rmu_sc0001314.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111610
rosa_rugosa	Rorug02G0308600
rosa_samantha	Rh2AG360900 Rh2BG366800 Rh2CG344200 Rh2DG383800
rosa_wichuraiana	Rw2G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2259
AatII	GACGTC	1 cut(s)	504
AbsI	CCTCGAGG	1 cut(s)	599
Acc36I	ACCTGC	3 cut(s)	1710, 2563, 3763
AccI	GTMKAC	2 cut(s)	1250, 2682
AciI	CCGC	4 cut(s)	1411, 2916, 3832, 4337
AclI	AACGTT	1 cut(s)	2391
AcoI	YGGCCR	5 cut(s)	364, 845, 1155, 3321, 3668
AcuI	CTGAAG	4 cut(s)	2601, 3012, 3167, 3389
AcvI	CACGTG	2 cut(s)	202, 4130
AcyI	GRCGYC	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	3002
AfiI	CCNNNNNNNGG	7 cut(s)	152, 215, 819, 820, 1986, 3499, 3677
AflII	CTTAAG	2 cut(s)	473, 1183
AflIII	ACRYGT	1 cut(s)	2440
AhdI	GACNNNNNGTC	1 cut(s)	3232
AjnI	CCWGG	7 cut(s)	164, 1514, 1853, 2998, 3336, 3493, 4317
AjuI	GAANNNNNNNTTGG	8 cut(s)	1537, 1569, 1967, 1999, 2571, 2603, 3170, 3202
AleI	CACNNNNGTG	1 cut(s)	674
Alw21I	GWGCWC	4 cut(s)	1440, 2233, 3607, 4135
Alw26I	GTCTC	5 cut(s)	863, 1457, 3240, 3246, 3260
Alw44I	GTGCAC	1 cut(s)	4131
AlwNI	CAGNNNCTG	1 cut(s)	3800
Ama87I	CYCGRG	2 cut(s)	599, 3207
AoxI	GGCC	9 cut(s)	364, 845, 985, 1155, 1533, 2895, 3094, 3321, 3668
ApaLI	GTGCAC	1 cut(s)	4131
ApeKI	GCWGC	9 cut(s)	700, 1604, 1863, 2927, 3416, 3524, 3731, 4049, 4111
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AseI	ATTAAT	2 cut(s)	1301, 1677
AspLEI	GCGC	2 cut(s)	1743, 2300
AsuHPI	GGTGA	4 cut(s)	1770, 2189, 3352, 4061
AvaI	CYCGRG	2 cut(s)	599, 3207
AvaII	GGWCC	8 cut(s)	98, 150, 595, 742, 902, 2050, 2348, 2456
BaeGI	GKGCMC	1 cut(s)	4135
BaeI	ACNNNNGTAYC	4 cut(s)	2406, 2439, 4297, 4330
BalI	TGGCCA	5 cut(s)	366, 847, 1157, 3323, 3670
BamHI	GGATCC	1 cut(s)	3973
BanII	GRGCYC	3 cut(s)	1440, 2233, 3607
BarI	GAAGNNNNNNTAC	2 cut(s)	561, 593
BauI	CACGAG	1 cut(s)	2370
BbrPI	CACGTG	2 cut(s)	202, 4130
BbsI	GAAGAC	4 cut(s)	1606, 2632, 3127, 3395
Bbv12I	GWGCWC	4 cut(s)	1440, 2233, 3607, 4135
BbvCI	CCTCAGC	1 cut(s)	2294
BbvI	GCAGC	9 cut(s)	712, 1591, 1875, 2914, 3428, 3536, 3718, 4061, 4123
BccI	CCATC	9 cut(s)	817, 837, 953, 1301, 1453, 1579, 3269, 3635, 3727
BceAI	ACGGC	4 cut(s)	91, 197, 3142, 4124
BcgI	CGANNNNNNTGC	2 cut(s)	2741, 2775
BciT130I	CCWGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
BciVI	GTATCC	4 cut(s)	1009, 2816, 3003, 4325
BclI	TGATCA	2 cut(s)	1795, 2989
BcoDI	GTCTC	5 cut(s)	863, 1457, 3240, 3246, 3260
BfaI	CTAG	8 cut(s)	1065, 1109, 1449, 1907, 3080, 3810, 4083, 4224
BfmI	CTRYAG	6 cut(s)	1344, 2031, 2556, 2928, 3193, 4098
BfrI	CTTAAG	2 cut(s)	473, 1183
BfuAI	ACCTGC	3 cut(s)	1710, 2563, 3763
BfuI	GTATCC	4 cut(s)	1009, 2816, 3003, 4325
BglII	AGATCT	1 cut(s)	3031
BmcAI	AGTACT	1 cut(s)	1505
Bme1390I	CCNGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
Bme18I	GGWCC	8 cut(s)	98, 150, 595, 742, 902, 2050, 2348, 2456
BmeRI	GACNNNNNGTC	1 cut(s)	3232
BmeT110I	CYCGRG	2 cut(s)	599, 3207
BmiI	GGNNCC	9 cut(s)	744, 1724, 1924, 2052, 2266, 2349, 2457, 3624, 3975
BmrFI	CCNGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
BmrI	ACTGGG	2 cut(s)	307, 3554
BmuI	ACTGGG	2 cut(s)	307, 3554
BoxI	GACNNNNGTC	1 cut(s)	332
BpiI	GAAGAC	4 cut(s)	1606, 2632, 3127, 3395
BpmI	CTGGAG	2 cut(s)	187, 4348
Bpu10I	CCTNAGC	2 cut(s)	2294, 4073
BpuEI	CTTGAG	5 cut(s)	331, 599, 3612, 3629, 3727
Bsa29I	ATCGAT	1 cut(s)	665
BsaAI	YACGTR	2 cut(s)	202, 4130
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	3246
BsaJI	CCNNGG	8 cut(s)	146, 1131, 1667, 2005, 2054, 3493, 3494, 4309
BsaWI	WCCGGW	1 cut(s)	3529
BsaXI	ACNNNNNCTCC	2 cut(s)	1427, 1457
Bsc4I	CCNNNNNNNGG	7 cut(s)	152, 215, 819, 820, 1986, 3499, 3677
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	5 cut(s)	313, 1307, 2710, 3549, 4374
Bse3DI	GCAATG	3 cut(s)	240, 1929, 2554
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
BseCI	ATCGAT	1 cut(s)	665
BseDI	CCNNGG	8 cut(s)	146, 1131, 1667, 2005, 2054, 3493, 3494, 4309
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	7 cut(s)	152, 215, 819, 820, 1986, 3499, 3677
BseMI	GCAATG	3 cut(s)	240, 1929, 2554
BseMII	CTCAG	5 cut(s)	1728, 2308, 3297, 3944, 3977
BseNI	ACTGG	5 cut(s)	313, 1307, 2710, 3549, 4374
BseRI	GAGGAG	1 cut(s)	1641
BseSI	GKGCMC	1 cut(s)	4135
BseXI	GCAGC	9 cut(s)	712, 1591, 1875, 2914, 3428, 3536, 3718, 4061, 4123
BsgI	GTGCAG	1 cut(s)	3717
BshFI	GGCC	9 cut(s)	366, 847, 987, 1157, 1535, 2897, 3096, 3323, 3670
BshVI	ATCGAT	1 cut(s)	665
BsiHKAI	GWGCWC	4 cut(s)	1440, 2233, 3607, 4135
BsiHKCI	CYCGRG	2 cut(s)	599, 3207
BsiSI	CCGG	2 cut(s)	153, 3530
BsiWI	CGTACG	1 cut(s)	2920
BslFI	GGGAC	4 cut(s)	62, 2036, 2469, 3977
BslI	CCNNNNNNNGG	7 cut(s)	152, 215, 819, 820, 1986, 3499, 3677
BsmAI	GTCTC	5 cut(s)	863, 1457, 3240, 3246, 3260
BsmBI	CGTCTC	1 cut(s)	863
BsmFI	GGGAC	4 cut(s)	62, 2036, 2469, 3977
BsmI	GAATGC	6 cut(s)	364, 2492, 3296, 3826, 4175, 4235
BsnI	GGCC	9 cut(s)	366, 847, 987, 1157, 1535, 2897, 3096, 3323, 3670
Bso31I	GGTCTC	1 cut(s)	3246
BsoBI	CYCGRG	2 cut(s)	599, 3207
Bsp1286I	GDGCHC	4 cut(s)	1440, 2233, 3607, 4135
Bsp1407I	TGTACA	1 cut(s)	1562
Bsp19I	CCATGG	3 cut(s)	2005, 2054, 4309
BspACI	CCGC	4 cut(s)	1411, 2916, 3832, 4337
BspANI	GGCC	9 cut(s)	366, 847, 987, 1157, 1535, 2897, 3096, 3323, 3670
BspCNI	CTCAG	5 cut(s)	1729, 2307, 3298, 3943, 3978
BspDI	ATCGAT	1 cut(s)	665
BspHI	TCATGA	2 cut(s)	757, 1071
BspLI	GGNNCC	9 cut(s)	744, 1724, 1924, 2052, 2266, 2349, 2457, 3624, 3975
BspMAI	CTGCAG	2 cut(s)	2560, 2932
BspMI	ACCTGC	3 cut(s)	1710, 2563, 3763
BspTI	CTTAAG	2 cut(s)	473, 1183
BspTNI	GGTCTC	1 cut(s)	3246
BsrDI	GCAATG	3 cut(s)	240, 1929, 2554
BsrFI	RCCGGY	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	1562
BsrI	ACTGG	5 cut(s)	313, 1307, 2710, 3549, 4374
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	8 cut(s)	146, 1131, 1667, 2005, 2054, 3493, 3494, 4309
BssNAI	GTATAC	1 cut(s)	1251
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	2370
BssT1I	CCWWGG	4 cut(s)	146, 2005, 2054, 4309
Bst1107I	GTATAC	1 cut(s)	1251
Bst2BI	CACGAG	1 cut(s)	2370
Bst2UI	CCWGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
Bst6I	CTCTTC	3 cut(s)	347, 533, 3060
BstACI	GRCGYC	1 cut(s)	501
BstAFI	CTTAAG	2 cut(s)	473, 1183
BstAPI	GCANNNNNTGC	2 cut(s)	2306, 2315
BstAUI	TGTACA	1 cut(s)	1562
BstBAI	YACGTR	2 cut(s)	202, 4130
BstC8I	GCNNGC	7 cut(s)	364, 1214, 1284, 2475, 2613, 2754, 4341
BstDEI	CTNAG	7 cut(s)	1737, 2294, 2593, 3306, 3930, 3986, 4073
BstDSI	CCRYGG	4 cut(s)	1667, 2005, 2054, 4309
BstHHI	GCGC	2 cut(s)	1743, 2300
BstMAI	GTCTC	5 cut(s)	863, 1457, 3240, 3246, 3260
BstNI	CCWGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
BstNSI	RCATGY	1 cut(s)	2444
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	7 cut(s)	164, 1514, 1853, 2998, 3336, 3493, 4317
BstSFI	CTRYAG	6 cut(s)	1344, 2031, 2556, 2928, 3193, 4098
BstSLI	GKGCMC	1 cut(s)	4135
BstV1I	GCAGC	9 cut(s)	712, 1591, 1875, 2914, 3428, 3536, 3718, 4061, 4123
BstV2I	GAAGAC	4 cut(s)	1606, 2632, 3127, 3395
BstX2I	RGATCY	5 cut(s)	2027, 3031, 3458, 3901, 3973
BstXI	CCANNNNNNTGG	2 cut(s)	374, 739
BstYI	RGATCY	5 cut(s)	2027, 3031, 3458, 3901, 3973
BstZ17I	GTATAC	1 cut(s)	1251
Bsu15I	ATCGAT	1 cut(s)	665
BsuI	GTATCC	4 cut(s)	1009, 2816, 3003, 4325
BsuRI	GGCC	9 cut(s)	366, 847, 987, 1157, 1535, 2897, 3096, 3323, 3670
BsuTUI	ATCGAT	1 cut(s)	665
BtgI	CCRYGG	4 cut(s)	1667, 2005, 2054, 4309
BtgZI	GCGATG	2 cut(s)	1279, 1881
BtsI	GCAGTG	3 cut(s)	2948, 4133, 4240
BveI	ACCTGC	3 cut(s)	1710, 2563, 3763
Cac8I	GCNNGC	7 cut(s)	364, 1214, 1284, 2475, 2613, 2754, 4341
CaiI	CAGNNNCTG	1 cut(s)	3800
CciI	TCATGA	2 cut(s)	757, 1071
CfoI	GCGC	2 cut(s)	1743, 2300
Cfr10I	RCCGGY	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	665
CsiI	ACCWGGT	2 cut(s)	2998, 3336
DdeI	CTNAG	7 cut(s)	1737, 2294, 2593, 3306, 3930, 3986, 4073
DraI	TTTAAA	3 cut(s)	255, 1003, 3657
DraIII	CACNNNGTG	1 cut(s)	3002
DriI	GACNNNNNGTC	1 cut(s)	3232
EaeI	YGGCCR	5 cut(s)	364, 845, 1155, 3321, 3668
Eam1104I	CTCTTC	3 cut(s)	347, 533, 3060
Eam1105I	GACNNNNNGTC	1 cut(s)	3232
EarI	CTCTTC	3 cut(s)	347, 533, 3060
EciI	GGCGGA	1 cut(s)	3821
Ecl136II	GAGCTC	3 cut(s)	1438, 2231, 3605
Eco130I	CCWWGG	4 cut(s)	146, 2005, 2054, 4309
Eco24I	GRGCYC	3 cut(s)	1440, 2233, 3607
Eco31I	GGTCTC	1 cut(s)	3246
Eco32I	GATATC	2 cut(s)	1323, 1647
Eco47I	GGWCC	8 cut(s)	98, 150, 595, 742, 902, 2050, 2348, 2456
Eco53kI	GAGCTC	3 cut(s)	1438, 2231, 3605
Eco57I	CTGAAG	4 cut(s)	2601, 3012, 3167, 3389
Eco72I	CACGTG	2 cut(s)	202, 4130
Eco88I	CYCGRG	2 cut(s)	599, 3207
EcoICRI	GAGCTC	3 cut(s)	1438, 2231, 3605
EcoO109I	RGGNCCY	3 cut(s)	2050, 2456, 2895
EcoRI	GAATTC	2 cut(s)	1975, 3689
EcoRII	CCWGG	7 cut(s)	164, 1514, 1853, 2998, 3336, 3493, 4317
EcoRV	GATATC	2 cut(s)	1323, 1647
EcoT14I	CCWWGG	4 cut(s)	146, 2005, 2054, 4309
EcoT22I	ATGCAT	2 cut(s)	766, 1774
EcoT38I	GRGCYC	3 cut(s)	1440, 2233, 3607
ErhI	CCWWGG	4 cut(s)	146, 2005, 2054, 4309
Esp3I	CGTCTC	1 cut(s)	863
FalI	AAGNNNNNCTT	6 cut(s)	705, 737, 1910, 1942, 2658, 2690
FaqI	GGGAC	4 cut(s)	62, 2036, 2469, 3977
FauNDI	CATATG	4 cut(s)	838, 2038, 2911, 3124
FbaI	TGATCA	2 cut(s)	1795, 2989
FblI	GTMKAC	2 cut(s)	1250, 2682
FriOI	GRGCYC	3 cut(s)	1440, 2233, 3607
FspBI	CTAG	8 cut(s)	1065, 1109, 1449, 1907, 3080, 3810, 4083, 4224
GlaI	GCGC	2 cut(s)	1742, 2299
GsuI	CTGGAG	2 cut(s)	187, 4348
HaeIII	GGCC	9 cut(s)	366, 847, 987, 1157, 1535, 2897, 3096, 3323, 3670
HapII	CCGG	2 cut(s)	153, 3530
HhaI	GCGC	2 cut(s)	1743, 2300
Hin1I	GRCGYC	1 cut(s)	501
Hin6I	GCGC	2 cut(s)	1741, 2298
HinP1I	GCGC	2 cut(s)	1741, 2298
HincII	GTYRAC	4 cut(s)	1105, 1180, 2209, 3201
HindII	GTYRAC	4 cut(s)	1105, 1180, 2209, 3201
HindIII	AAGCTT	2 cut(s)	2754, 3550
HpaII	CCGG	2 cut(s)	153, 3530
HphI	GGTGA	4 cut(s)	1770, 2189, 3352, 4061
Hpy99I	CGWCG	1 cut(s)	218
HpyCH4IV	ACGT	8 cut(s)	201, 501, 852, 2151, 2391, 2699, 3400, 4129
HpyF3I	CTNAG	7 cut(s)	1737, 2294, 2593, 3306, 3930, 3986, 4073
HpySE526I	ACGT	8 cut(s)	201, 501, 852, 2151, 2391, 2699, 3400, 4129
Hsp92I	GRCGYC	1 cut(s)	501
HspAI	GCGC	2 cut(s)	1741, 2298
Ksp22I	TGATCA	2 cut(s)	1795, 2989
LmnI	GCTCC	8 cut(s)	218, 1209, 1435, 1443, 2270, 3532, 3797, 3895
Lsp1109I	GCAGC	9 cut(s)	712, 1591, 1875, 2914, 3428, 3536, 3718, 4061, 4123
MabI	ACCWGGT	2 cut(s)	2998, 3336
MaeI	CTAG	8 cut(s)	1065, 1109, 1449, 1907, 3080, 3810, 4083, 4224
MaeII	ACGT	8 cut(s)	201, 501, 852, 2151, 2391, 2699, 3400, 4129
MaeIII	GTNAC	7 cut(s)	109, 691, 1187, 1900, 2078, 2177, 3700
MfeI	CAATTG	4 cut(s)	2418, 3042, 3664, 4254
MflI	RGATCY	5 cut(s)	2027, 3031, 3458, 3901, 3973
MhlI	GDGCHC	4 cut(s)	1440, 2233, 3607, 4135
MlsI	TGGCCA	5 cut(s)	366, 847, 1157, 3323, 3670
MluNI	TGGCCA	5 cut(s)	366, 847, 1157, 3323, 3670
MlyI	GAGTC	5 cut(s)	614, 691, 2214, 2821, 3928
MmeI	TCCRAC	5 cut(s)	196, 576, 758, 2152, 3766
Mox20I	TGGCCA	5 cut(s)	366, 847, 1157, 3323, 3670
Mph1103I	ATGCAT	2 cut(s)	766, 1774
MscI	TGGCCA	5 cut(s)	366, 847, 1157, 3323, 3670
MslI	CAYNNNNRTG	7 cut(s)	533, 674, 737, 841, 1583, 1666, 3844
Msp20I	TGGCCA	5 cut(s)	366, 847, 1157, 3323, 3670
MspA1I	CMGCKG	1 cut(s)	3731
MspCI	CTTAAG	2 cut(s)	473, 1183
MspI	CCGG	2 cut(s)	153, 3530
MspR9I	CCNGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
MunI	CAATTG	4 cut(s)	2418, 3042, 3664, 4254
Mva1269I	GAATGC	6 cut(s)	364, 2492, 3296, 3826, 4175, 4235
MvaI	CCWGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
NcoI	CCATGG	3 cut(s)	2005, 2054, 4309
NdeI	CATATG	4 cut(s)	838, 2038, 2911, 3124
NlaIV	GGNNCC	9 cut(s)	744, 1724, 1924, 2052, 2266, 2349, 2457, 3624, 3975
NmeAIII	GCCGAG	1 cut(s)	840
NmuCI	GTSAC	4 cut(s)	109, 691, 2078, 2177
NsiI	ATGCAT	2 cut(s)	766, 1774
NspI	RCATGY	1 cut(s)	2444
OliI	CACNNNNGTG	1 cut(s)	674
PaeR7I	CTCGAG	2 cut(s)	599, 3207
PagI	TCATGA	2 cut(s)	757, 1071
PasI	CCCWGGG	1 cut(s)	3494
PciI	ACATGT	1 cut(s)	2440
PcsI	WCGNNNNNNNCGW	1 cut(s)	3214
PctI	GAATGC	6 cut(s)	364, 2492, 3296, 3826, 4175, 4235
Pfl23II	CGTACG	1 cut(s)	2920
PleI	GAGTC	5 cut(s)	614, 690, 2213, 2820, 3928
PmaCI	CACGTG	2 cut(s)	202, 4130
PmlI	CACGTG	2 cut(s)	202, 4130
PpsI	GAGTC	5 cut(s)	614, 690, 2213, 2820, 3928
Ppu21I	YACGTR	2 cut(s)	202, 4130
PpuMI	RGGWCCY	2 cut(s)	2050, 2456
PscI	ACATGT	1 cut(s)	2440
PshAI	GACNNNNGTC	1 cut(s)	332
PshBI	ATTAAT	2 cut(s)	1301, 1677
PsiI	TTATAA	1 cut(s)	2259
Psp124BI	GAGCTC	3 cut(s)	1440, 2233, 3607
Psp1406I	AACGTT	1 cut(s)	2391
Psp5II	RGGWCCY	2 cut(s)	2050, 2456
Psp6I	CCWGG	7 cut(s)	164, 1514, 1853, 2998, 3336, 3493, 4317
PspCI	CACGTG	2 cut(s)	202, 4130
PspGI	CCWGG	7 cut(s)	164, 1514, 1853, 2998, 3336, 3493, 4317
PspLI	CGTACG	1 cut(s)	2920
PspN4I	GGNNCC	9 cut(s)	744, 1724, 1924, 2052, 2266, 2349, 2457, 3624, 3975
PspPPI	RGGWCCY	2 cut(s)	2050, 2456
PspXI	VCTCGAGB	1 cut(s)	599
PstI	CTGCAG	2 cut(s)	2560, 2932
PstNI	CAGNNNCTG	1 cut(s)	3800
PsuI	RGATCY	5 cut(s)	2027, 3031, 3458, 3901, 3973
PvuII	CAGCTG	1 cut(s)	3731
RseI	CAYNNNNRTG	7 cut(s)	533, 674, 737, 841, 1583, 1666, 3844
SacI	GAGCTC	3 cut(s)	1440, 2233, 3607
ScaI	AGTACT	1 cut(s)	1505
SchI	GAGTC	5 cut(s)	614, 691, 2214, 2821, 3928
ScrFI	CCNGG	7 cut(s)	166, 1516, 1855, 3000, 3338, 3495, 4319
SduI	GDGCHC	4 cut(s)	1440, 2233, 3607, 4135
SexAI	ACCWGGT	2 cut(s)	2998, 3336
SfcI	CTRYAG	6 cut(s)	1344, 2031, 2556, 2928, 3193, 4098
Sfr274I	CTCGAG	2 cut(s)	599, 3207
SinI	GGWCC	8 cut(s)	98, 150, 595, 742, 902, 2050, 2348, 2456
SlaI	CTCGAG	2 cut(s)	599, 3207
SmiMI	CAYNNNNRTG	7 cut(s)	533, 674, 737, 841, 1583, 1666, 3844
SmlI	CTYRAG	9 cut(s)	346, 473, 599, 614, 1183, 3207, 3608, 3627, 3706
SmoI	CTYRAG	9 cut(s)	346, 473, 599, 614, 1183, 3207, 3608, 3627, 3706
SsiI	CCGC	4 cut(s)	1411, 2916, 3832, 4337
SspI	AATATT	1 cut(s)	2730
SspMI	CTAG	8 cut(s)	1065, 1109, 1449, 1907, 3080, 3810, 4083, 4224
SstI	GAGCTC	3 cut(s)	1440, 2233, 3607
StyD4I	CCNGG	7 cut(s)	164, 1514, 1853, 2998, 3336, 3493, 4317
StyI	CCWWGG	4 cut(s)	146, 2005, 2054, 4309
TaiI	ACGT	8 cut(s)	204, 504, 855, 2154, 2394, 2702, 3403, 4132
TaqI	TCGA	6 cut(s)	237, 600, 665, 2233, 3208, 4305
TaqII	GACCGA	1 cut(s)	3228
TatI	WGTACW	3 cut(s)	1503, 1562, 2864
TauI	GCSGC	1 cut(s)	2919
TseFI	GTSAC	4 cut(s)	109, 691, 2078, 2177
TseI	GCWGC	9 cut(s)	700, 1604, 1863, 2927, 3416, 3524, 3731, 4049, 4111
Tsp45I	GTSAC	4 cut(s)	109, 691, 2078, 2177
TspGWI	ACGGA	8 cut(s)	31, 66, 1513, 1656, 2066, 2668, 3697, 3777
Vha464I	CTTAAG	2 cut(s)	473, 1183
VneI	GTGCAC	1 cut(s)	4131
VpaK11BI	GGWCC	8 cut(s)	98, 150, 595, 742, 902, 2050, 2348, 2456
VspI	ATTAAT	2 cut(s)	1301, 1677
XceI	RCATGY	1 cut(s)	2444
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1314, 2052, 4282
XhoI	CTCGAG	2 cut(s)	599, 3207
XmiI	GTMKAC	2 cut(s)	1250, 2682
XspI	CTAG	8 cut(s)	1065, 1109, 1449, 1907, 3080, 3810, 4083, 4224
ZraI	GACGTC	1 cut(s)	502
ZrmI	AGTACT	1 cut(s)	1505
Zsp2I	ATGCAT	2 cut(s)	766, 1774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.