pycom09g16660

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013000
Physical Location & Seq
Forward (+)
16970889 .. 16972181
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
ATGAGAAAGAATAACGGTATTTGGTCGTGTAGGGAGAATTGCTTCTTAAAACAGAGTCATATATACCGAAATAAAGAAAAACAAAACCTCAAACTCCTCCCATATTCTTGCTTAATGGCGGCAGCTACAGGGGCCATCGTGGAGCTTCAGAGAAACTCTCCCAACTGGGCGACGATAGTGGAAGAAATAGTGAAGCTAGAGCGGAAGATTTTCCCGAAACACGAATCCCTTGCCCGAAGCTTTGACGAAGAACTGAGAAAGAAAAACAGCGGGCTTCTATATTACAGGGAACAACAAGTAGATGGTGAAGAAGTTGCAGGCTATGTCATGTACTCTTGGCCTTCTTCCCTGTACGCTTCCATCACAAAGCTGGCAGTGAAGGATACTTGTCGGAAGCAAGGCTACGGAGAAGCACTACTGACAGCAGCCATTCAGAAATGTAGAACAAGAAATGTCCAGCGCATAACACTTCACGTTGATCCCTTGAGAGCTCCTGCTGTGAATCTTTACAAGAAATTCGGTTTCAAAGTTGACAACCTCATACAAGGTTACTACTCTTCGGATCGAAATGCCTATAGAATGTACCTGGACTTTGATGCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

202

Amino Acids

23.32

Weight (kDa)

9.43

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 63 - 175 8.2e-18 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 74 - 178 3.6e-10 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 101 - 176 1.9e-11 Acetyltransferase (GNAT) domain
FR47 PF08445 119 - 178 1.8e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03650
fragaria_vesca FvH4_2g15130 FvH4_2g15130
malus_domestica MD09G1249800.v1.1
prunus_persica Prupe.3G155400_v2.0.a1
pyrus_communis pycom09g16660
rosa_chinensis RchiOBHm_Chr6g0277731
rosa_laevigata RLG00000013279
rosa_multiflora Rmu_sc0007109.1_g000020
rosa_roxburghii Rroxscaffold_7G00190990
rosa_rugosa Rorug06G0110500 Rorug06G0110600 Rorug06G0110700
rosa_samantha Rh6AG221200 Rh6BG225100 Rh6CG227600 Rh6DG218300
rosa_wichuraiana Rw6G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 202
AciI CCGC 3 cut(s) 119, 202, 270
AclWI GGATC 2 cut(s) 473, 570
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 3 cut(s) 332, 353, 584
AgsI TTSAA 1 cut(s) 526
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 7 cut(s) 125, 145, 196, 240, 370, 491, 603
AluI AGCT 7 cut(s) 125, 145, 196, 240, 370, 491, 603
Alw21I GWGCWC 1 cut(s) 493
AlwI GGATC 2 cut(s) 473, 570
AoxI GGCC 2 cut(s) 132, 338
ApeKI GCWGC 2 cut(s) 122, 425
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 2 cut(s) 41, 209
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 317
BanII GRGCYC 1 cut(s) 493
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 2 cut(s) 134, 437
BccI CCATC 3 cut(s) 143, 296, 368
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 1 cut(s) 376
BfaI CTAG 2 cut(s) 197, 604
BfmI CTRYAG 2 cut(s) 126, 574
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 3 cut(s) 120, 123, 426
BlsI GCNGC 3 cut(s) 121, 124, 427
Bme1390I CCNGG 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 587
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 586
BmuI ACTGGG 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpuEI CTTGAG 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 587
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 134, 437
BshFI GGCC 2 cut(s) 134, 340
BsiHKAI GWGCWC 1 cut(s) 493
BsnI GGCC 2 cut(s) 134, 340
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 2 cut(s) 478, 562
BspACI CCGC 3 cut(s) 119, 202, 270
BspANI GGCC 2 cut(s) 134, 340
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 473, 570
BsrBI CCGCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 478, 562
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 562
BstC8I GCNNGC 4 cut(s) 272, 319, 372, 601
BstDEI CTNAG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 2 cut(s) 481, 565
BstMBI GATC 2 cut(s) 478, 562
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 126, 574
BstV1I GCAGC 2 cut(s) 134, 437
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 134, 340
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 4 cut(s) 272, 319, 372, 601
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 331, 352, 583
CviAII CATG 1 cut(s) 328
CviQI GTAC 3 cut(s) 331, 352, 583
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 480, 564
DpnII GATC 2 cut(s) 478, 562
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 1 cut(s) 331
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 3 cut(s) 120, 123, 426
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 3 cut(s) 120, 123, 426
FspBI CTAG 2 cut(s) 197, 604
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 120, 123, 426
HaeIII GGCC 2 cut(s) 134, 340
HhaI GCGC 1 cut(s) 462
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 3 cut(s) 55, 224, 502
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 150, 393, 435, 562
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 351, 373
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 478, 562
LmnI GCTCC 2 cut(s) 142, 496
Lsp1109I GCAGC 2 cut(s) 134, 437
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 197, 604
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 548
MalI GATC 2 cut(s) 480, 564
MbiI CCGCTC 1 cut(s) 202
MboI GATC 2 cut(s) 478, 562
MboII GAAGA 6 cut(s) 194, 217, 260, 320, 336, 549
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 2 cut(s) 37, 515
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 3 cut(s) 98, 107, 548
MroXI GAANNNNTTC 2 cut(s) 41, 209
MseI TTAA 2 cut(s) 47, 113
MspA1I CMGCKG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 478, 562
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 133
PdmI GAANNNNTTC 2 cut(s) 41, 209
PfeI GAWTC 2 cut(s) 224, 502
PkrI GCNGC 3 cut(s) 121, 124, 427
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 3 cut(s) 332, 353, 584
RsaNI GTAC 3 cut(s) 331, 352, 583
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 47, 113
SatI GCNGC 3 cut(s) 120, 123, 426
Sau3AI GATC 2 cut(s) 478, 562
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 126, 574
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 2 cut(s) 37, 515
SsiI CCGC 3 cut(s) 119, 202, 270
SspMI CTAG 2 cut(s) 197, 604
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 585
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 565
TasI AATT 2 cut(s) 37, 515
TatI WGTACW 1 cut(s) 330
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 224, 502
Tru1I TTAA 2 cut(s) 47, 113
Tru9I TTAA 2 cut(s) 47, 113
TscAI CASTG 1 cut(s) 381
TseI GCWGC 2 cut(s) 122, 425
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 381
XapI RAATTY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmnI GAANNNNTTC 2 cut(s) 41, 209
XspI CTAG 2 cut(s) 197, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.