Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015473

Physical Location & Seq

Genomic Coordinates Forward (+)

1938033 .. 1940502

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGATTTCCGTGACGGCGTCCGCGGTTCCTTGTCTCAGCTCTGACCGTACGGCTCGCATAGCTGCGGCGGCGGCATCATCCTCTTCTTCTTGTTCAAAGCTGTCCTCCTCGACTTCTATGCGATTTCCATCACACCTTCGACACGTTCGAATCGGAACACGGGACTCAAGGCCTCGGATTCTTCCTCCGGTTGAAGCAAAGAAGCAAACATTTTCCTCCTTCGAAGATTTGCTGGCTACCTCCGAAAAACCTGTGTTGGTTGACTTCTATGCAACCTGGTGCGGTCCTTGTCAGTTTATGGCACCTATCCTCAATGAAGTCAGTATTACGCTGAACGACAAGATCCAGGTTGTGAAAATTGACACAGAGAAGTATCCTAGCATTGCTGATAAATATAACATACAAGCATTGCCTACTTTCATCATATTTAAGGATGGAGAGCCATTTGACCGCTTTGAGGGTGCTTTGACTGCTGATCAGCTTGTCGAACGAATAGAAACTACTTTGAAAGTTAGGAAGTACTTCTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

179

Amino Acids

19.66

Weight (kDa)

8.69

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	70 - 167	5.3e-30	Thioredoxin
Thioredoxin_2	PF13098	81 - 164	2.4e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76760
fragaria_vesca	FvH4_2g13460
malus_domestica	MD05G1027800.v1.1 MD10G1028500.v1.1
prunus_persica	Prupe.8G033500_v2.0.a1
pyrus_communis	pycom10g01850
rosa_chinensis	RchiOBHm_Chr6g0275081
rosa_laevigata	RLG00000013499
rosa_multiflora	Rmu_sc0000447.1_g000014
rosa_roxburghii	Rroxscaffold_7G00193680
rosa_rugosa	Rorug06G0088000
rosa_samantha	Rh6AG202300 Rh6BG205700 Rh6CG207600 Rh6DG197500
rosa_wichuraiana	Rw6G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccII	CGCG	1 cut(s)	26
AciI	CCGC	7 cut(s)	24, 26, 68, 71, 74, 285, 454
AclWI	GGATC	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	52, 524
AfiI	CCNNNNNNNGG	1 cut(s)	460
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	99, 197, 511
AjnI	CCWGG	2 cut(s)	278, 348
AluBI	AGCT	4 cut(s)	42, 65, 103, 484
AluI	AGCT	4 cut(s)	42, 65, 103, 484
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	287
AsuII	TTCGAA	2 cut(s)	151, 225
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	139, 431
BceAI	ACGGC	2 cut(s)	33, 69
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	2 cut(s)	280, 350
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	4 cut(s)	66, 69, 72, 75
BlsI	GCNGC	4 cut(s)	67, 70, 73, 76
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	280, 350
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	30, 306
BmrFI	CCNGG	2 cut(s)	280, 350
BmsI	GCATC	1 cut(s)	86
Bpu14I	TTCGAA	2 cut(s)	151, 225
BpuEI	CTTGAG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	24, 176
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse3DI	GCAATG	2 cut(s)	384, 410
Bse8I	GATNNNNATC	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	280, 350
BseDI	CCNNGG	2 cut(s)	24, 176
BseGI	GGATG	2 cut(s)	80, 442
BseJI	GATNNNNATC	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	2 cut(s)	384, 410
BseMII	CTCAG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	191
BsiWI	CGTACG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	175
Bsp119I	TTCGAA	2 cut(s)	151, 225
Bsp143I	GATC	2 cut(s)	345, 478
BspACI	CCGC	7 cut(s)	24, 26, 68, 71, 74, 285, 454
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	30, 306
BspPI	GGATC	1 cut(s)	340
BspT104I	TTCGAA	2 cut(s)	151, 225
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	384, 410
BssECI	CCNNGG	2 cut(s)	24, 176
BssMI	GATC	2 cut(s)	345, 478
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	280, 350
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	20
BstBI	TTCGAA	2 cut(s)	151, 225
BstC8I	GCNNGC	2 cut(s)	58, 237
BstDEI	CTNAG	2 cut(s)	38, 529
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	80, 442
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	2 cut(s)	348, 481
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	345, 478
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 74, 473
BstNI	CCWGG	2 cut(s)	280, 350
BstSCI	CCNGG	2 cut(s)	278, 348
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	80, 442
Cac8I	GCNNGC	2 cut(s)	58, 237
Cfr13I	GGNCC	1 cut(s)	287
Cfr42I	CCGCGG	1 cut(s)	27
CseI	GACGC	1 cut(s)	9
CsiI	ACCWGGT	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	51, 523
CviJI	RGCY	8 cut(s)	42, 56, 65, 103, 175, 239, 445, 484
CviKI_1	RGCY	8 cut(s)	42, 56, 65, 103, 175, 239, 445, 484
CviQI	GTAC	2 cut(s)	51, 523
DdeI	CTNAG	2 cut(s)	38, 529
DpnI	GATC	2 cut(s)	347, 480
DpnII	GATC	2 cut(s)	345, 478
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco147I	AGGCCT	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	278, 348
FaiI	YATR	7 cut(s)	62, 122, 273, 302, 399, 404, 428
FaqI	GGGAC	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	66, 69, 72, 75
FokI	GGATG	2 cut(s)	67, 449
Fsp4HI	GCNGC	4 cut(s)	66, 69, 72, 75
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	4 cut(s)	66, 69, 72, 75
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	153, 167, 181
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	46, 158, 180, 247
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	149, 232
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 74, 473
HpyF3I	CTNAG	2 cut(s)	38, 529
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	478
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	345, 478
LpnPI	CCDG	8 cut(s)	204, 221, 265, 267, 292, 335, 362, 516
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	86
MabI	ACCWGGT	1 cut(s)	278
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	347, 480
MboI	GATC	2 cut(s)	345, 478
MboII	GAAGA	4 cut(s)	78, 81, 176, 239
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	9 cut(s)	94, 118, 121, 186, 198, 229, 253, 323, 454
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	280, 350
MvaI	CCWGG	2 cut(s)	280, 350
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 74, 473
NdeII	GATC	2 cut(s)	345, 478
NlaIV	GGNNCC	2 cut(s)	30, 306
NmuCI	GTSAC	1 cut(s)	13
NspV	TTCGAA	2 cut(s)	151, 225
PceI	AGGCCT	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	153, 181
Pfl23II	CGTACG	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	67, 70, 73, 76
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	278, 348
PspGI	CCWGG	2 cut(s)	278, 348
PspLI	CGTACG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	30, 306
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	345
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	52, 524
RsaNI	GTAC	2 cut(s)	51, 523
SacII	CCGCGG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	4 cut(s)	66, 69, 72, 75
Sau3AI	GATC	2 cut(s)	345, 478
Sau96I	GGNCC	1 cut(s)	287
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	280, 350
SexAI	ACCWGGT	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	86
Sfr303I	CCGCGG	1 cut(s)	27
SfuI	TTCGAA	2 cut(s)	151, 225
SgrBI	CCGCGG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	360
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	7 cut(s)	24, 26, 68, 71, 74, 285, 454
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	278, 348
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	5 cut(s)	113, 142, 151, 225, 489
TasI	AATT	1 cut(s)	360
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	3 cut(s)	71, 74, 77
TfiI	GAWTC	2 cut(s)	153, 181
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	333, 412
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.