Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010312

Physical Location & Seq

Genomic Coordinates Forward (+)

4916208 .. 4917512

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACAACATTGCAAGCATATTCCTCTCTAAGAAGTCCTCTGATCTAGCCAATATCGATCAAATTGAAAGAAGTTGCTTCATTGTAGCTTCCATCGCATTCTGCAAGATTCAGCACCTAAACGCCATGATAAATGTTAAAACTCAAGTGGACTTAATTGTGACAATGCATGATTTACTCGCTGAGTATGGGCTTTGCTGTGCCGGGAAGGGTGGTGAAGTGGGGGAAGGAACTTTTCTTAAGTTCGCAATTAAGCATCTGTTGGCCTTGGATATGAAGTTTAAATCTAACGTTAACTCATCAAATCAGGAAACAACTCAATCTAACGAGCAGCTTTGCCTAAATTGTCCTGCCAAAATGTCTCTCAAGGAATCAAAATCAGATACTGATCTGGAAATGGTGCACACTGGAACAGATAATACAAGTGCTGTAGGAAAGGATGCTTCTGAAGGGATACCTTCCAAAAGCACTTCACTTGAGAATGCCATAGATAAGGACAGCATGGAATTGGAAGATGGAAAGCAACATGTAGATGGGTCAGGGGGCAAGTTCAACAGATCCGAAGAAAGTGATCAATTAAATGAAGCTGGAGATGAGCTCATTGAAGATGAAAGGGAGGAACTTGAGTTAAAAATTGATTATGCATTGGATCAGTGTTTCTTCTGCTTATATGGTCTAAATATTAGATCTGATTCATCCTATGAAGATGAGTTAGTTGTGCACAAAAATACTAGCCCCGGTGATTACCAGACACAGGAACGGTGTGCTGATGTTTTTCAGTACATACTCCCTTATGCAAGGGCTTCTTCTAGGACAGGATTAGTTAAAGTTCGACGAGTACTCAGAGCCATACGCAAACATTTTCCACAACCACCAGACGGTGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006996 GO:0008150 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0010941 GO:0014823 GO:0016043 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0019904 GO:0022607 GO:0030234 GO:0030346 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031497 GO:0032268 GO:0032269 GO:0032515 GO:0034622 GO:0034724 GO:0034728 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.93

Weight (kDa)

4.94

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32820 AT4G32820 AT4G32820
fragaria_vesca	FvH4_2g35140
malus_domestica	MD08G1108900.v1.1
prunus_persica	Prupe.1G443500_v2.0.a1 Prupe.1G443500_v2.0.a1
pyrus_communis	pycom08g09070 pycom10g04690
rosa_chinensis	RchiOBHm_Chr6g0306811
rosa_laevigata	RLG00000010764
rosa_multiflora	Rmu_sc0009381.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161450
rosa_rugosa	Rorug06G0353200 Rorug06G0353300 Rorug06G0353300
rosa_samantha	Rh6AG465000 Rh6BG435800 Rh6CG479400 Rh6DG466300
rosa_wichuraiana	Rw6G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	2 cut(s)	552, 657
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	3 cut(s)	5, 782, 840
AfiI	CCNNNNNNNGG	2 cut(s)	754, 878
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	68, 553, 605
AluBI	AGCT	4 cut(s)	89, 334, 587, 598
AluI	AGCT	4 cut(s)	89, 334, 587, 598
Alw21I	GWGCWC	3 cut(s)	405, 600, 723
Alw26I	GTCTC	1 cut(s)	366
Alw44I	GTGCAC	2 cut(s)	401, 719
AlwI	GGATC	2 cut(s)	552, 657
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	264
ApaLI	GTGCAC	2 cut(s)	401, 719
ApeKI	GCWGC	1 cut(s)	331
AsuC2I	CCSGG	2 cut(s)	205, 738
AsuHPI	GGTGA	2 cut(s)	227, 752
BaeGI	GKGCMC	2 cut(s)	405, 723
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	3 cut(s)	405, 600, 723
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	3 cut(s)	101, 509, 527
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	2 cut(s)	205, 738
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	3 cut(s)	47, 732, 810
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	447
BglII	AGATCT	1 cut(s)	686
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
BmcAI	AGTACT	1 cut(s)	840
Bme1390I	CCNGG	2 cut(s)	205, 738
BmrFI	CCNGG	2 cut(s)	205, 738
BmsI	GCATC	2 cut(s)	265, 430
BplI	GAGNNNNNCTC	2 cut(s)	582, 614
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	4 cut(s)	129, 350, 497, 644
BpuMI	CCSGG	2 cut(s)	205, 738
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	267, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	754, 878
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	267, 736
BseGI	GGATG	2 cut(s)	445, 695
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	754, 878
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	174, 856
BseNI	ACTGG	1 cut(s)	412
BseSI	GKGCMC	2 cut(s)	405, 723
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	3 cut(s)	405, 600, 723
BsiSI	CCGG	2 cut(s)	204, 738
BslI	CCNNNNNNNGG	2 cut(s)	754, 878
BsmAI	GTCTC	1 cut(s)	366
BsmI	GAATGC	2 cut(s)	98, 487
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	405, 600, 723
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	175, 855
BspDI	ATCGAT	1 cut(s)	57
BspPI	GGATC	2 cut(s)	552, 657
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	267, 736
BssMI	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	762, 881
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	30, 183, 842
BstF5I	GGATG	2 cut(s)	445, 695
BstKTI	GATC	7 cut(s)	46, 61, 391, 560, 574, 652, 689
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	203, 736
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	405, 723
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	557, 686
BstYI	RGATCY	2 cut(s)	557, 686
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	445, 695
BtsIMutI	CAGTG	2 cut(s)	405, 659
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	4, 781, 839
CviAII	CATG	4 cut(s)	127, 170, 502, 527
CviQI	GTAC	3 cut(s)	4, 781, 839
DdeI	CTNAG	3 cut(s)	30, 183, 842
DpnI	GATC	7 cut(s)	45, 60, 390, 559, 573, 651, 688
DpnII	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
DraI	TTTAAA	1 cut(s)	283
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	2 cut(s)	171, 646
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	130, 173, 505, 530
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FatI	CATG	4 cut(s)	126, 169, 501, 526
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	2 cut(s)	452, 682
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	3 cut(s)	47, 732, 810
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	204, 738
Hin1II	CATG	4 cut(s)	130, 173, 505, 530
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	109, 371, 692
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	204, 738
HphI	GGTGA	2 cut(s)	227, 752
Hpy166II	GTNNAC	4 cut(s)	151, 295, 403, 721
Hpy188I	TCNGA	6 cut(s)	43, 382, 448, 562, 691, 845
Hpy188III	TCNNGA	2 cut(s)	308, 392
Hpy8I	GTNNAC	4 cut(s)	151, 295, 403, 721
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	4 cut(s)	202, 221, 443, 468
HpyCH4III	ACNGT	2 cut(s)	762, 881
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	14, 105, 169, 403, 644, 721, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	30, 183, 842
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	130, 173, 505, 530
Ksp22I	TGATCA	1 cut(s)	571
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	265, 430
MaeI	CTAG	3 cut(s)	47, 732, 810
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	7 cut(s)	45, 60, 390, 559, 573, 651, 688
MboI	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
MboII	GAAGA	6 cut(s)	524, 575, 617, 652, 716, 798
MflI	RGATCY	2 cut(s)	557, 686
MhlI	GDGCHC	3 cut(s)	405, 600, 723
MluCI	AATT	7 cut(s)	63, 156, 249, 343, 506, 575, 633
MnlI	CCTC	3 cut(s)	35, 49, 610
Mph1103I	ATGCAT	2 cut(s)	171, 646
MslI	CAYNNNNRTG	1 cut(s)	531
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	2 cut(s)	204, 738
MspR9I	CCNGG	2 cut(s)	205, 738
Mva1269I	GAATGC	2 cut(s)	98, 487
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	205, 738
NdeII	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
NlaIII	CATG	4 cut(s)	130, 173, 505, 530
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	2 cut(s)	171, 646
NspI	RCATGY	1 cut(s)	530
PciI	ACATGT	1 cut(s)	526
PctI	GAATGC	2 cut(s)	98, 487
PfeI	GAWTC	3 cut(s)	109, 371, 692
PflFI	GACNNNGTC	1 cut(s)	881
PkrI	GCNGC	1 cut(s)	333
PscI	ACATGT	1 cut(s)	526
Psp124BI	GAGCTC	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	291
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	557, 686
PsyI	GACNNNGTC	1 cut(s)	881
RsaI	GTAC	3 cut(s)	5, 782, 840
RsaNI	GTAC	3 cut(s)	4, 781, 839
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	600
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	7 cut(s)	43, 58, 388, 557, 571, 649, 686
ScaI	AGTACT	1 cut(s)	840
ScrFI	CCNGG	2 cut(s)	205, 738
SduI	GDGCHC	3 cut(s)	405, 600, 723
SetI	ASST	7 cut(s)	91, 120, 294, 336, 460, 589, 600
SfaNI	GCATC	2 cut(s)	265, 430
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	5 cut(s)	144, 239, 365, 476, 623
SmoI	CTYRAG	5 cut(s)	144, 239, 365, 476, 623
Sse9I	AATT	7 cut(s)	63, 156, 249, 343, 506, 575, 633
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	3 cut(s)	47, 732, 810
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	203, 736
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	762, 881
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	57, 832
TasI	AATT	7 cut(s)	63, 156, 249, 343, 506, 575, 633
TatI	WGTACW	3 cut(s)	3, 780, 838
TfiI	GAWTC	3 cut(s)	109, 371, 692
TscAI	CASTG	2 cut(s)	412, 659
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	70, 290, 597, 624, 684, 717
TspRI	CASTG	2 cut(s)	412, 659
Tth111I	GACNNNGTC	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	239
VneI	GTGCAC	2 cut(s)	401, 719
XceI	RCATGY	1 cut(s)	530
XspI	CTAG	3 cut(s)	47, 732, 810
ZrmI	AGTACT	1 cut(s)	840
Zsp2I	ATGCAT	2 cut(s)	171, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.