Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010312

Physical Location & Seq

Genomic Coordinates Reverse (-)

4205661 .. 4216714

Gene Structure 11054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5937 bp

ATGGAAAAGCTAGCAGCAATAGTCGATCAGAACCCCTCCGGTCTCCGACTGATGAATTGTTTGGTTTGGTCTTGTCAGGAATTTCATCTCTCACAAACTTATCATGAAGGACTTCACAAGTTGCAAACTAAAGAATACAAAAGGGCTAGTGAGCTGTTAGGATCTGTCCTAAAAGACCCTTTAATAGAAAACGCGCGGGTGGATGGTAATGTCAGTGATTGTCATCTGTTGCAACTCAGATTTTTGGCACTGAAGAACCTTGCCAATGTTTTTCTTCAACAAGGTTCAGAACACTATGAGAGTGCTCTACGATGTTATCTCCAAGCTGTAGAGATTGATACCAAAGATTCTGTTGTTTGGAACCAGCTCGGAACATTATCATGCTCGATGGGCTCTCTGAGTATATCACGTTGGGCATTTGAGCAAGGGCTTTTGTGCAGCCCTAATAATTGGAACTGCATGGAGAAATTGTTGGAAGTTCTTATTGCTATCGGTGATGAGGTTGCATGCCTTTCTGTGGCAGAGTTAATTTTGAGGCATTGGCCATCACATTCTCGTGCTTTGCATGTCAAGAAAACAATTGAAGAGTCAGAGCCAGTTCCATTTGCTCCTAGAGGTATAGATAAGCTGGAACCTAAACATGTCCGTCTCAAATTTGTTGACAAGAGAAAAGCAACTCAAGCACTTCTAGAGGAGGGCGTTGCATCCAAGAAGCTGAACCAGAGCATGGATTTGAACCTTGTAGACGCTACTTGGGCAGCTCTTGCTGATGCACTCTTGGATATCTTACTTCCGTTGAATGGCTGTAGATCTGAGATGGGGAATGCAAAAGAATACAGATCTGGAGACATCAGATTAATTTTACACTTACCTTCTAGTTCAGAAGGTAACAGAGGGTCTAAGGAAAGAAAAGGACATAACTTGACCCCAATTGGTGAAAATACCTCTTCTGGTGATTGCAACACTGGAAGAACAGGTGTTAAAGAGAAAGACACAAGTCTTCTAGAATTCCAAAAACAGGAGAGGCGGAGTACTCGCCTTGAAAGGCTTAGAACTCGTAAACCAGAGAAAGAAGATCTTGACTTTGCTAATGGTAAAGCTCAGGCCAAGGTTGTTATTCAGTGTCTAGAACCTTTTATTGCTGGCGGATCAGGAATCAAAGAGTCCAATCATTCTGTCTCATGTCCCGATCAAGCTAATCCCTGGGATACTGAATATGGTGATGTTTGCAGATTTGTTGAAAAAGCTTCAAAGAACTACGGTGCTTTCCATTTGGCTCACTTGCTTTTGGAAGAGGTTGCAAGTAGAGATCTTCAGCATCAGGATGCATTTATTAAGTTTCTGGACTTGGAAAAGATAACAAGGAATTGGGGGAAGGATAGGACCCCTGAATGCTGCCTTTTCCTTGCTGAGCTTTATTATGACCTTGGTTCATTGTCTGATGCTTCAAGGTTGTCAGAATTCATGTCCGAGGCATCTTATCATCTTTGTAAGATTCTCGAATCAGTAGCTTTGGAAGATGAAAGTATCTCTGGGCTTAAGAGACTCTTCGGTAATAATGGAATATCAGCCGACAATTCTGTTTGCCAGGATGTATCATTAAGTGACAAGTTGTTAGCAAGTAGCTCCTTTTGGGTTCGGTTTTTCTGGTTAAGTGGACGATTATCTATTTTAGACGGCAACAAGGAAAAAGCCCACCAAGAATTCTGTATTTCCTTGTCACTTTTGGCAAACAAGGAAAATATCAGTGATTCGCAGCGTGTAATCCGCCTCCCACATTGCAAGGTTGTTAAAGAGTTAACTGTTGATAGGATTCTCCATGAAATTAACATTTTAAAGGTTGATTTCTTGACGCAGAAGACTTTAGGTGAGATGATCGAGAAGGAAATGTATATGGAGTGCATGACCTTGCTTGTTCCGCTTCTATTTGCCACACGAAATGTGCCCCCTGATGCATTACCTCTACACTTAGCTAATAAAGGAGGCGGAGGAATTACTTCAGTTGAACTGTCAGCACTAGACATTTTAATCAAAGCTTGTGAAAAGACAAAACCTGTGGATGTTGACATTTATTTGAATTGTCATCGTCAGAAACTGCAAATTCTTATGGCAGCAGCAGGGATTGATGAATGCCTGGCTTCCTGTAAATCCTTCCTTTCTAAATCAGGGTCAAAAGCTCGCTTCCATTCTGTCATAGATTCAAATGAAAGTTCGAGCAAGCAGTGCTGGAATTTCTTGGTTGCAGAGGAAGTAAAGGCCATTTCTCAATGCGCGTCCCAAGTGAAGAACTTTATTGATCAACCTGGAGCTTCTGACAGCAATTCTGTTCCGATGAGCAGCATAGGTGATCTCCAATGCTTGCTCTTGTCAGTCATGTGTAATGTTGCAAGCATATTCCTCTGTAAGAAATCTCCTGAGCTAGTGACGGCTGATGAAATTGAACAAAGTTGCTTCATTGAAGCTTCCATTGCATTCTGCAAACTTCAACACCTCAACCACATGATACCTGTTAAAACTCAAGTTGACTTAATTGTCACTATGCACGATCTACTGGCGGAATATGGACTCTGCTGTGCAGGTCAGGGTACTGAAAAGGAGGAAGGAATGTTTCTTAAATTTGCAATTAAGCATCTATTGGCCTTGGATATGAAGTTTAAATCTACCTTTAACTCATCAAGTAAAGAAACAACTGAAGACAACGAGCTGCTTGACCTAAATAGTCCTGCCAAAATAACTCTAAATGAATCAAAATCAGATACACTAGATGTGGAAATGGTTCACACTGGAAGAGATGAAATCAGTACTGCAGGGAAGGATGTATCAGAAGCAATATCATCAAAAAACATTTTATCTGATAAAGCTCTAGAGGAAGATCTTAATTTGGAATCAGAAGGTAGAAAGCAAGATGAAGATGGTTCTGGTGGTAAGTTCAACAGAGGTGAAGAAGCAAGTGATCAATTGAATGAAGATGAAGATGAACTCATAGAAGATGAAAGGGAGGAGATTGAGTTGAAAATTGATTATGCCTTGGATCAGTGCTTCTTCTGCTTATATGGTCTAAATATTAGATCTGATTCATCCTATGAAGATGACTTAGCTGTGCACAAAAATACTAGCCCTGGTGATTACCAGACAAAGGAACAATGTGCTGATGTTTTTCAGTACATACTTCCTTATGCAAAGGCTTCTTCTAGGACAGGACTAGTCAAAGTTCGAAGAGTACTCAGAGCCATACGCAAACACTTTCCACAACCACCAGAAGATGTTTTGGGTGGAAATGCAATAGATAAGTTCTTAGATGATCTCAATTTATGTGAAGATAAGCTCTCAGATGAGGCTGGGTCTGACGGCTTTCTTGAGACCATAATGAAGGTGATACTTCCTGATGAGAGAAGGTTTAAACAACAAAAGTCATCATCCGTTGGGAGCTCTGAACCATATCTGGATGTCTATTGCAATTTATATTATTTCCTTGCCCTCTCTGAGGAAATGAGTGCTACAGACAAGTGGCCTGGCTTTGTGCTTACAAAGGAAGGGGAAGAATTTGTACAGCATAATGCGAATCTCTTCAAATATGATTTACTCTACAACCCTCTGCGTTTTGAAAGTTGGCAAAGACTAGGACATATCTATGACGAGGAAGTGGACTTGTTACTAAATGATGGCAGTAAACACATCAATGTGGCAGGATGGAGGAAGAATGTTACATTACCTCAGAGGGTTGAGACAAGTCGAAGGAGGAGTAGGCGGTGTCTGTTAATGAGTTTGGCTTTGGCAAAGACATCAGCTCAGCAGAGTGAGATACACGAGTTATTGGCATTGGTATACTATGATAGCCTTCAAAGCGTGGTGCCATTTTTTGATCAACGAACTGTTGTACCCTTGAAGGATGCAGCATGGGTGGTGTTTTGCGAGAACTCGATGAGACACTTTAAAAAGGCTTTTGCTCACAAGCAAGACTGGTCCCATGCTTACTATATTGGGAAGCTCTGTGAAAAGCTTGGGTACTCCTATGAGACATCTTTATCATATTATGATAAAGCTATTGCTCTGAATCCAACAGCTGTAGATCCTGTTTACAGGATGCATGCTTCGCGCCTGAAATTACTTTTTACATGTGGAAAACAAAATCTAGAAGCTTTAAAGGTTCTTTCAGCATATGCCTTTAGTCAATCAACAAAAGATGCTGTCATGACAATGGTAGGTGACATGGATGCGGAAATGTCAAATTCACCAAAGGATAGAAGCACAGAAACAAACTCTGAGAAGGTGAAGCATGAAGATGCGGTTAAATCAGAGGTGTGGAATATGCTTTACAGCGACTGTCTTTGTGCCCTTGAAACTTGTATTGAAGGAGAGCTTAAACATTTTCATAAAGCCAGATATATGCTCGCACAAGGTCTGCATAGAAGAGGGGAAAGTGATGCATCTGAGAGAGCAAAAGATGAACTCTCTTTTTGCTTCAAGTCATCTCGGTCATCATTTACAATAAATATGTGGGAAATTGATAGTACAGCCAAAAAAGGAAGGCGGAAAACTCCTGGAGTTTGCGGGAGCAAAAGGTCCCTTGAGGTTAACTTACCTGAAAGTTCTAGAAAATTCATTACTTGCATTCGGAAATATCTTCTGTTCTATTTGAAACTGTTGGAGGAGACTGGAGACATCTGTACTCTTGACCGTGCTTATATCTCTCTTCGGTCTGATAAGAGGTTTTCACTATGCATTGAAGATCTTGTTCCAGTTGCCCTTGGGAGGTATGTAAAGGCCCTTGTTTCATCGATCCGCCAAGTTGAAACTGTTGGCTCTGGTGCTGTTGATAATTCCGAGCATGTATTGGAGAAAGTGTTTTCTTTGTTCATGGAACAGGGGAACTTATGGCCTGAAATATGTGGTTTGCCTGAGATTAAGGTCACAGAAACATCAGAAAGCAGTTTATATGGATATCTTCATGAACATATCATATCATTAGAGGAAAATGGTAAATTGGATACTCTTGAAGCCATAAATGAGAAGATTCGAAAGCGTTTCAAGAATCCAAAATTGTCAAACAGCAACTGTGCAAAAGTTTGCAGGCATGCATCCATTGCTTGGTGTAGATCTCTTATATTGTGGTTGGCACAGATCACTCCATCACAGTCTGAAATCGCAAGTGAGATTCAGGTTCTAAATCCTTCAGATGGTGGGTTGGAAAATAGCCAGCTGCTCTGTGTTGATTTGCAGACAGATGAATTGTGGAGTTCAGCTTTTGAGGACCCAACCCATTTTAAAAAGCTTGAAGCAAAACGAAATCCTGTTTTCTCTAAAATAAAGAACTTAGTTGTTAAGAAAGCTTCAGATGAAAATTTAGAGACTGCCAGTGCTTTGCTTCGATCTTCGTACAACTTCTATCGTGAGAGCTCAAGTGTAATGCCTTCATCCGGTGTAAATCTGTATTTAGTTTCATCATGGTTAGCAAGGGATACACAATTCAGACCAAGCATGGAGGGGGCTGAAATCCTTGACCTTAGCATTCCAAGGAAGCTCCTCTTGTGGGCTTACACACTATTGCATGGCCGTTACACAAACATCTCTTTTGTTGTAAAGCATTGTGAAGAAAATGCAAGGTCTAAAATGAAAAAAGGAGCAGGAACCTCATCTGTGCCCTCAACCACAAGCATAGCAAACACCACCACTGCTCATACAGCTACAGCATCGGTAGCAGCTTGTGGCAGAGATGGAGTCGGACCTAGTGGAACCAGTGACACAGATCCAGCAAACGCAGTAGTATCTACCTCATTGCCTGAGAGCACAACGCAATGTACAAATCAACCAACTTCTGACATGTACCAAACAAGTTCATTTGCTGCTCCCCCACTTCAGCATTGCAACAACCCCGTTACAGAGAGGAGCAATACAACAGCAGCAGATGAAGGAGCTTCAGACATAGTTGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006996 GO:0008150 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0010941 GO:0014823 GO:0016043 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0019904 GO:0022607 GO:0030234 GO:0030346 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031497 GO:0032268 GO:0032269 GO:0032515 GO:0034622 GO:0034724 GO:0034728 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1978

Amino Acids

221.38

Weight (kDa)

5.62

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32820 AT4G32820 AT4G32820
fragaria_vesca	FvH4_2g35140
malus_domestica	MD08G1108900.v1.1
prunus_persica	Prupe.1G443500_v2.0.a1 Prupe.1G443500_v2.0.a1
pyrus_communis	pycom08g09070 pycom10g04690
rosa_chinensis	RchiOBHm_Chr6g0306811
rosa_laevigata	RLG00000010764
rosa_multiflora	Rmu_sc0009381.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161450
rosa_rugosa	Rorug06G0353200 Rorug06G0353300 Rorug06G0353300
rosa_samantha	Rh6AG465000 Rh6BG435800 Rh6CG479400 Rh6DG466300
rosa_wichuraiana	Rw6G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2531
Acc36I	ACCTGC	1 cut(s)	2567
AccB1I	GGYRCC	1 cut(s)	3850
AccB7I	CCANNNNNTGG	2 cut(s)	727, 5088
AccI	GTMKAC	2 cut(s)	744, 3825
AccII	CGCG	4 cut(s)	194, 196, 2273, 4096
AclWI	GGATC	6 cut(s)	169, 1156, 3039, 4064, 4774, 5741
AcoI	YGGCCR	2 cut(s)	542, 5551
AcuI	CTGAAG	8 cut(s)	272, 1298, 1983, 2712, 5157, 5316, 5840, 5901
AflII	CTTAAG	1 cut(s)	1538
AflIII	ACRYGT	3 cut(s)	640, 4115, 5820
AhlI	ACTAGT	1 cut(s)	3202
AjnI	CCWGG	7 cut(s)	1202, 1587, 2133, 2302, 3118, 3511, 4540
Alw21I	GWGCWC	5 cut(s)	307, 3105, 3431, 5399, 5789
Alw44I	GTGCAC	1 cut(s)	3101
AlwI	GGATC	6 cut(s)	169, 1156, 3039, 4064, 4774, 5741
AlwNI	CAGNNNCTG	3 cut(s)	2095, 4323, 5055
AoxI	GGCC	8 cut(s)	542, 1104, 2256, 2637, 3509, 4764, 4877, 5551
ApaLI	GTGCAC	1 cut(s)	3101
AseI	ATTAAT	1 cut(s)	857
Asp700I	GAANNNNTTC	4 cut(s)	111, 1996, 2775, 3566
AspLEI	GCGC	3 cut(s)	196, 2273, 4098
AspS9I	GGNCC	6 cut(s)	1383, 3963, 4563, 4765, 5251, 5723
AsuII	TTCGAA	2 cut(s)	3214, 5017
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	5 cut(s)	1383, 3963, 4563, 5251, 5723
BaeGI	GKGCMC	4 cut(s)	1947, 3105, 4336, 5643
BaeI	ACNNNNGTAYC	4 cut(s)	3794, 3827, 3861, 3894
BalI	TGGCCA	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	3850
BanII	GRGCYC	3 cut(s)	395, 3431, 5399
BarI	GAAGNNNNNNTAC	2 cut(s)	3531, 3563
BauI	CACGAG	2 cut(s)	555, 3806
BbsI	GAAGAC	3 cut(s)	992, 1865, 2700
Bbv12I	GWGCWC	5 cut(s)	307, 3105, 3431, 5399, 5789
BceAI	ACGGC	4 cut(s)	1693, 2442, 3364, 5538
BciT130I	CCWGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
BciVI	GTATCC	3 cut(s)	1201, 4981, 5452
BclI	TGATCA	3 cut(s)	2296, 2953, 3862
BcuI	ACTAGT	1 cut(s)	3202
BfmI	CTRYAG	6 cut(s)	327, 805, 2805, 3498, 4065, 5685
BfrI	CTTAAG	1 cut(s)	1538
BfuAI	ACCTGC	1 cut(s)	2567
BfuI	GTATCC	3 cut(s)	1201, 4981, 5452
BglII	AGATCT	8 cut(s)	809, 839, 1075, 1309, 2872, 3068, 4729, 5096
BlpI	GCTNAGC	2 cut(s)	1410, 3789
BmcAI	AGTACT	3 cut(s)	1033, 2803, 3222
Bme1390I	CCNGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
Bme18I	GGWCC	5 cut(s)	1383, 3963, 4563, 5251, 5723
BmgT120I	GGNCC	6 cut(s)	1383, 3963, 4563, 4765, 5251, 5723
BmiI	GGNNCC	9 cut(s)	362, 633, 1385, 3852, 3965, 4565, 5253, 5629, 5734
BmrFI	CCNGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
BmtI	GCTAGC	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	996
BpiI	GAAGAC	3 cut(s)	992, 1865, 2700
BpmI	CTGGAG	4 cut(s)	864, 2325, 4563, 4677
Bpu10I	CCTNAGC	3 cut(s)	1101, 2415, 5504
Bpu1102I	GCTNAGC	2 cut(s)	1410, 3789
Bpu14I	TTCGAA	2 cut(s)	3214, 5017
BpuEI	CTTGAG	5 cut(s)	663, 2502, 3377, 4589, 5383
Bsa29I	ATCGAT	1 cut(s)	4778
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	2 cut(s)	47, 3353
BsaWI	WCCGGW	2 cut(s)	38, 5417
BsaXI	ACNNNNNCTCC	6 cut(s)	455, 485, 2993, 3023, 4829, 4859
Bse1I	ACTGG	9 cut(s)	596, 970, 2556, 2788, 3965, 4660, 4739, 5355, 5736
Bse3DI	GCAATG	6 cut(s)	1777, 2466, 5082, 5774, 5801, 5860
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
BseCI	ATCGAT	1 cut(s)	4778
BseJI	GATNNNNATC	1 cut(s)	222
BseMI	GCAATG	6 cut(s)	1777, 2466, 5082, 5774, 5801, 5860
BseNI	ACTGG	9 cut(s)	596, 970, 2556, 2788, 3965, 4660, 4739, 5355, 5736
BseRI	GAGGAG	6 cut(s)	707, 3014, 3754, 4664, 5513, 5899
BseSI	GKGCMC	4 cut(s)	1947, 3105, 4336, 5643
BseYI	CCCAGC	1 cut(s)	3338
BsgI	GTGCAG	2 cut(s)	457, 2595
Bsh1236I	CGCG	4 cut(s)	194, 196, 2273, 4096
BshFI	GGCC	8 cut(s)	544, 1106, 2258, 2639, 3511, 4766, 4879, 5553
BshNI	GGYRCC	1 cut(s)	3850
BshVI	ATCGAT	1 cut(s)	4778
BsiHKAI	GWGCWC	5 cut(s)	307, 3105, 3431, 5399, 5789
BsiSI	CCGG	2 cut(s)	39, 5418
BslFI	GGGAC	4 cut(s)	1170, 2260, 3949, 4549
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	4 cut(s)	1170, 2260, 3949, 4549
BsmI	GAATGC	6 cut(s)	829, 1397, 2135, 2471, 4611, 5508
BsnI	GGCC	8 cut(s)	544, 1106, 2258, 2639, 3511, 4766, 4879, 5553
Bso31I	GGTCTC	2 cut(s)	47, 3353
Bsp119I	TTCGAA	2 cut(s)	3214, 5017
Bsp1286I	GDGCHC	9 cut(s)	307, 395, 1947, 3105, 3431, 4336, 5399, 5643, 5789
Bsp1407I	TGTACA	2 cut(s)	3547, 5798
Bsp1720I	GCTNAGC	2 cut(s)	1410, 3789
BspANI	GGCC	8 cut(s)	544, 1106, 2258, 2639, 3511, 4766, 4879, 5553
BspDI	ATCGAT	1 cut(s)	4778
BspFNI	CGCG	4 cut(s)	194, 196, 2273, 4096
BspHI	TCATGA	3 cut(s)	103, 4191, 4948
BspLI	GGNNCC	9 cut(s)	362, 633, 1385, 3852, 3965, 4565, 5253, 5629, 5734
BspMAI	CTGCAG	1 cut(s)	2809
BspMI	ACCTGC	1 cut(s)	2567
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	6 cut(s)	169, 1156, 3039, 4064, 4774, 5741
BspT104I	TTCGAA	2 cut(s)	3214, 5017
BspT107I	GGYRCC	1 cut(s)	3850
BspTI	CTTAAG	1 cut(s)	1538
BspTNI	GGTCTC	2 cut(s)	47, 3353
BsrDI	GCAATG	6 cut(s)	1777, 2466, 5082, 5774, 5801, 5860
BsrGI	TGTACA	2 cut(s)	3547, 5798
BsrI	ACTGG	9 cut(s)	596, 970, 2556, 2788, 3965, 4660, 4739, 5355, 5736
BssNAI	GTATAC	1 cut(s)	3826
BssSI	CACGAG	2 cut(s)	555, 3806
BssT1I	CCWWGG	6 cut(s)	1107, 1426, 2640, 3027, 4747, 5513
Bst1107I	GTATAC	1 cut(s)	3826
Bst2BI	CACGAG	2 cut(s)	555, 3806
Bst2UI	CCWGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
Bst6I	CTCTTC	9 cut(s)	579, 952, 1287, 1553, 2782, 3211, 3572, 4405, 4698
BstAFI	CTTAAG	1 cut(s)	1538
BstAPI	GCANNNNNTGC	3 cut(s)	764, 2223, 5084
BstAUI	TGTACA	2 cut(s)	3547, 5798
BstBI	TTCGAA	2 cut(s)	3214, 5017
BstENI	CCTNNNNNAGG	1 cut(s)	3482
BstFNI	CGCG	4 cut(s)	194, 196, 2273, 4096
BstHHI	GCGC	3 cut(s)	196, 2273, 4098
BstNI	CCWGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
BstNSI	RCATGY	8 cut(s)	510, 569, 644, 4091, 4119, 4832, 5078, 5824
BstPAI	GACNNNNGTC	1 cut(s)	996
BstSCI	CCNGG	7 cut(s)	1202, 1587, 2133, 2302, 3118, 3511, 4540
BstSFI	CTRYAG	6 cut(s)	327, 805, 2805, 3498, 4065, 5685
BstSLI	GKGCMC	4 cut(s)	1947, 3105, 4336, 5643
BstUI	CGCG	4 cut(s)	194, 196, 2273, 4096
BstV2I	GAAGAC	3 cut(s)	992, 1865, 2700
BstZ17I	GTATAC	1 cut(s)	3826
Bsu15I	ATCGAT	1 cut(s)	4778
BsuI	GTATCC	3 cut(s)	1201, 4981, 5452
BsuRI	GGCC	8 cut(s)	544, 1106, 2258, 2639, 3511, 4766, 4879, 5553
BsuTUI	ATCGAT	1 cut(s)	4778
BtsI	GCAGTG	2 cut(s)	2228, 5670
BveI	ACCTGC	1 cut(s)	2567
CaiI	CAGNNNCTG	3 cut(s)	2095, 4323, 5055
CciI	TCATGA	3 cut(s)	103, 4191, 4948
CfoI	GCGC	3 cut(s)	196, 2273, 4098
Cfr13I	GGNCC	6 cut(s)	1383, 3963, 4563, 4765, 5251, 5723
ClaI	ATCGAT	1 cut(s)	4778
CseI	GACGC	3 cut(s)	755, 1861, 2262
CspCI	CAANNNNNGTGG	2 cut(s)	2037, 2072
DraI	TTTAAA	6 cut(s)	1836, 2656, 3400, 3934, 4143, 5266
DrdI	GACNNNNNNGTC	1 cut(s)	2531
DseDI	GACNNNNNNGTC	1 cut(s)	2531
EaeI	YGGCCR	2 cut(s)	542, 5551
Eam1104I	CTCTTC	9 cut(s)	579, 952, 1287, 1553, 2782, 3211, 3572, 4405, 4698
EarI	CTCTTC	9 cut(s)	579, 952, 1287, 1553, 2782, 3211, 3572, 4405, 4698
EciI	GGCGGA	7 cut(s)	1042, 1161, 1757, 2001, 2570, 4546, 4772
Ecl136II	GAGCTC	2 cut(s)	3429, 5397
Eco130I	CCWWGG	6 cut(s)	1107, 1426, 2640, 3027, 4747, 5513
Eco24I	GRGCYC	3 cut(s)	395, 3431, 5399
Eco31I	GGTCTC	2 cut(s)	47, 3353
Eco32I	GATATC	2 cut(s)	784, 4943
Eco47I	GGWCC	5 cut(s)	1383, 3963, 4563, 5251, 5723
Eco53kI	GAGCTC	2 cut(s)	3429, 5397
Eco57I	CTGAAG	8 cut(s)	272, 1298, 1983, 2712, 5157, 5316, 5840, 5901
EcoICRI	GAGCTC	2 cut(s)	3429, 5397
EcoNI	CCTNNNNNAGG	1 cut(s)	3482
EcoO109I	RGGNCCY	4 cut(s)	1383, 4563, 4765, 5251
EcoRI	GAATTC	3 cut(s)	1007, 1460, 1703
EcoRII	CCWGG	7 cut(s)	1202, 1587, 2133, 2302, 3118, 3511, 4540
EcoRV	GATATC	2 cut(s)	784, 4943
EcoT14I	CCWWGG	6 cut(s)	1107, 1426, 2640, 3027, 4747, 5513
EcoT22I	ATGCAT	6 cut(s)	1330, 1957, 4089, 4429, 4724, 5080
EcoT38I	GRGCYC	3 cut(s)	395, 3431, 5399
ErhI	CCWWGG	6 cut(s)	1107, 1426, 2640, 3027, 4747, 5513
Esp3I	CGTCTC	1 cut(s)	653
FalI	AAGNNNNNCTT	8 cut(s)	1062, 1094, 1532, 1564, 4344, 4376, 5510, 5542
FaqI	GGGAC	4 cut(s)	1170, 2260, 3949, 4549
FauI	CCCGC	2 cut(s)	189, 4544
FauNDI	CATATG	1 cut(s)	4159
FbaI	TGATCA	3 cut(s)	2296, 2953, 3862
FblI	GTMKAC	2 cut(s)	744, 3825
FriOI	GRGCYC	3 cut(s)	395, 3431, 5399
GlaI	GCGC	3 cut(s)	195, 2272, 4097
GsaI	CCCAGC	1 cut(s)	3342
GsuI	CTGGAG	4 cut(s)	864, 2325, 4563, 4677
HaeIII	GGCC	8 cut(s)	544, 1106, 2258, 2639, 3511, 4766, 4879, 5553
HapII	CCGG	2 cut(s)	39, 5418
HgaI	GACGC	3 cut(s)	755, 1861, 2262
HhaI	GCGC	3 cut(s)	196, 2273, 4098
Hin6I	GCGC	3 cut(s)	194, 2271, 4096
HinP1I	GCGC	3 cut(s)	194, 2271, 4096
HincII	GTYRAC	6 cut(s)	661, 1800, 2065, 2524, 4576, 5929
HindII	GTYRAC	6 cut(s)	661, 1800, 2065, 2524, 4576, 5929
HindIII	AAGCTT	7 cut(s)	1245, 2034, 2460, 3998, 4137, 5270, 5328
HpaI	GTTAAC	2 cut(s)	1800, 4576
HpaII	CCGG	2 cut(s)	39, 5418
HpyCH4IV	ACGT	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	409
HspAI	GCGC	3 cut(s)	194, 2271, 4096
Ksp22I	TGATCA	3 cut(s)	2296, 2953, 3862
KspAI	GTTAAC	2 cut(s)	1800, 4576
MaeII	ACGT	1 cut(s)	409
MfeI	CAATTG	3 cut(s)	579, 930, 2957
MhlI	GDGCHC	9 cut(s)	307, 395, 1947, 3105, 3431, 4336, 5399, 5643, 5789
MlsI	TGGCCA	1 cut(s)	544
MluNI	TGGCCA	1 cut(s)	544
MlyI	GAGTC	5 cut(s)	596, 1172, 1539, 2559, 5727
MmeI	TCCRAC	6 cut(s)	70, 453, 4082, 4626, 5166, 5701
Mox20I	TGGCCA	1 cut(s)	544
Mph1103I	ATGCAT	6 cut(s)	1330, 1957, 4089, 4429, 4724, 5080
MroXI	GAANNNNTTC	4 cut(s)	111, 1996, 2775, 3566
MscI	TGGCCA	1 cut(s)	544
MslI	CAYNNNNRTG	8 cut(s)	379, 555, 1323, 3630, 3678, 3680, 4196, 4281
Msp20I	TGGCCA	1 cut(s)	544
MspA1I	CMGCKG	2 cut(s)	4064, 5200
MspCI	CTTAAG	1 cut(s)	1538
MspI	CCGG	2 cut(s)	39, 5418
MspR9I	CCNGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
MssI	GTTTAAAC	1 cut(s)	3400
MunI	CAATTG	3 cut(s)	579, 930, 2957
Mva1269I	GAATGC	6 cut(s)	829, 1397, 2135, 2471, 4611, 5508
MvaI	CCWGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
MvnI	CGCG	4 cut(s)	194, 196, 2273, 4096
NdeI	CATATG	1 cut(s)	4159
NheI	GCTAGC	1 cut(s)	10
NlaIV	GGNNCC	9 cut(s)	362, 633, 1385, 3852, 3965, 4565, 5253, 5629, 5734
NmuCI	GTSAC	7 cut(s)	1604, 1719, 2422, 2533, 4205, 4909, 5738
NsiI	ATGCAT	6 cut(s)	1330, 1957, 4089, 4429, 4724, 5080
NspI	RCATGY	8 cut(s)	510, 569, 644, 4091, 4119, 4832, 5078, 5824
NspV	TTCGAA	2 cut(s)	3214, 5017
PaeI	GCATGC	3 cut(s)	510, 4091, 5078
PagI	TCATGA	3 cut(s)	103, 4191, 4948
PasI	CCCWGGG	1 cut(s)	1203
PciI	ACATGT	3 cut(s)	640, 4115, 5820
PctI	GAATGC	6 cut(s)	829, 1397, 2135, 2471, 4611, 5508
PdmI	GAANNNNTTC	4 cut(s)	111, 1996, 2775, 3566
PflMI	CCANNNNNTGG	2 cut(s)	727, 5088
PfoI	TCCNGGA	1 cut(s)	4540
PleI	GAGTC	5 cut(s)	595, 1171, 1539, 2559, 5726
PmeI	GTTTAAAC	1 cut(s)	3400
PpsI	GAGTC	5 cut(s)	595, 1171, 1539, 2559, 5726
PpuMI	RGGWCCY	3 cut(s)	1383, 4563, 5251
PscI	ACATGT	3 cut(s)	640, 4115, 5820
PshAI	GACNNNNGTC	1 cut(s)	996
PshBI	ATTAAT	1 cut(s)	857
Psp124BI	GAGCTC	2 cut(s)	3431, 5399
Psp5II	RGGWCCY	3 cut(s)	1383, 4563, 5251
Psp6I	CCWGG	7 cut(s)	1202, 1587, 2133, 2302, 3118, 3511, 4540
PspFI	CCCAGC	1 cut(s)	3338
PspGI	CCWGG	7 cut(s)	1202, 1587, 2133, 2302, 3118, 3511, 4540
PspN4I	GGNNCC	9 cut(s)	362, 633, 1385, 3852, 3965, 4565, 5253, 5629, 5734
PspPI	GGNCC	6 cut(s)	1383, 3963, 4563, 4765, 5251, 5723
PspPPI	RGGWCCY	3 cut(s)	1383, 4563, 5251
PstI	CTGCAG	1 cut(s)	2809
PstNI	CAGNNNCTG	3 cut(s)	2095, 4323, 5055
PvuII	CAGCTG	2 cut(s)	4064, 5200
RseI	CAYNNNNRTG	8 cut(s)	379, 555, 1323, 3630, 3678, 3680, 4196, 4281
SacI	GAGCTC	2 cut(s)	3431, 5399
Sau96I	GGNCC	6 cut(s)	1383, 3963, 4563, 4765, 5251, 5723
ScaI	AGTACT	3 cut(s)	1033, 2803, 3222
SchI	GAGTC	5 cut(s)	596, 1172, 1539, 2559, 5727
ScrFI	CCNGG	7 cut(s)	1204, 1589, 2135, 2304, 3120, 3513, 4542
SduI	GDGCHC	9 cut(s)	307, 395, 1947, 3105, 3431, 4336, 5399, 5643, 5789
SfcI	CTRYAG	6 cut(s)	327, 805, 2805, 3498, 4065, 5685
SfuI	TTCGAA	2 cut(s)	3214, 5017
SinI	GGWCC	5 cut(s)	1383, 3963, 4563, 5251, 5723
SmiMI	CAYNNNNRTG	8 cut(s)	379, 555, 1323, 3630, 3678, 3680, 4196, 4281
SmlI	CTYRAG	6 cut(s)	678, 1538, 2517, 3356, 4568, 5398
SmoI	CTYRAG	6 cut(s)	678, 1538, 2517, 3356, 4568, 5398
SpeI	ACTAGT	1 cut(s)	3202
SphI	GCATGC	3 cut(s)	510, 4091, 5078
SspI	AATATT	1 cut(s)	3064
SstI	GAGCTC	2 cut(s)	3431, 5399
StyD4I	CCNGG	7 cut(s)	1202, 1587, 2133, 2302, 3118, 3511, 4540
StyI	CCWWGG	6 cut(s)	1107, 1426, 2640, 3027, 4747, 5513
TaiI	ACGT	1 cut(s)	412
TaqII	GACCGA	2 cut(s)	4464, 4686
TatI	WGTACW	8 cut(s)	1031, 2801, 3162, 3220, 3547, 4511, 4667, 5798
TseFI	GTSAC	7 cut(s)	1604, 1719, 2422, 2533, 4205, 4909, 5738
Tsp45I	GTSAC	7 cut(s)	1604, 1719, 2422, 2533, 4205, 4909, 5738
TspGWI	ACGGA	3 cut(s)	635, 783, 3409
Van91I	CCANNNNNTGG	2 cut(s)	727, 5088
Vha464I	CTTAAG	1 cut(s)	1538
VneI	GTGCAC	1 cut(s)	3101
VpaK11BI	GGWCC	5 cut(s)	1383, 3963, 4563, 5251, 5723
VspI	ATTAAT	1 cut(s)	857
XagI	CCTNNNNNAGG	1 cut(s)	3482
XbaI	TCTAGA	6 cut(s)	688, 1003, 1126, 2863, 4132, 4592
XceI	RCATGY	8 cut(s)	510, 569, 644, 4091, 4119, 4832, 5078, 5824
XmiI	GTMKAC	2 cut(s)	744, 3825
XmnI	GAANNNNTTC	4 cut(s)	111, 1996, 2775, 3566
ZrmI	AGTACT	3 cut(s)	1033, 2803, 3222
Zsp2I	ATGCAT	6 cut(s)	1330, 1957, 4089, 4429, 4724, 5080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.