Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010312

Physical Location & Seq

Genomic Coordinates Reverse (-)

4197092 .. 4206630

Gene Structure 9539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5952 bp

ATGTTCTCAATTGCAGCTATCAATGACGATGCTGACTCCAAAGGCACGTGGGAGCCCTTAGCTCCTACCAAAGAAGCTCAGGAATTTCATCTCTCACAAACTTATCATGAAGGACTTCACAAGTTACAAACTAAAGAATACAAGAGGGCTAGTGAGTTGTTAGAATCTGTTCTAAAAGACCCTTTAATAGAAAACGCGCGGGTGGATGGTAATGTCAGCGATTGTCATCTATTGCAACTCAGATTTTTGGCACTGAAGAACCTTGCCAATGTTTTTCTTCAACAAGGTTCAGAACATTATGAGAGTGCTCTTCGATGTTATCTCCAAGCTGTAGAGATTGATACCAAAGATTCTGTTGTCTGGAACCAGCTTGGAACATTATCATGCTCGATGGGCTCTCTGAGTATATCACGTTGGGCATTTGAGCAAGGGCTTTTGTGCAGCCCTAATAATTGGAACTGCATGGAGAAATTGTTGGAAGTTCTTATTGCTATCGGTGATGAGGTTGCATGCCTTTCTGTGGCAGAGTTAATTTTGAGGCATTGGCCATCACATTCTCGTGCTTTGCATGTCAAGAAAACAATTGAAGAGTCAGAGCCAGTTCCATTTGCTCCTAGAGGTATAGATAAGCTGGAACCTAAACATGTCCGTCTCAAATTTGTTGACAAGAGAAAAGCAACTCAAGCACTTCTAGAGGAGGGCGTTGCATCCAAGAAGCTGAACCAGAGCATGGATTTGAACCTTGCAGACGCTACTTGGGCAGCTCTTGCTGATGCACTCTTGGATATCTTACTTCCGTTGAATGGCTGTAGATCTGAGATGGGGAATGCAAAAGAATACAGATCTGGAGACATCAGATTAATTTTACACTTACCTTCTAGTTCAGAAGGTAACAGAGGGTCTGAGGAAAGAAAAGGACATAACTTGACCCCAATTGGTGAAAATACCTCTTCTGGTGATTGCAACACTGGAAGAACAGGTGTTAAAGAGAAAGACACAAGTCTTCTAGAATTCCAAAAACAGGAGAGGCGGAGTACTCGCCTTGAAAGGCTTAGAACTCGTAAACCAGGGAAAGAAGATCTTGACTTTGCTAATGGTAAAGCTCAGGCCAAGGTTGTTATTCAGTGTCTAGAACCTTTTATTGCTGGCGGATCAGGAATCAAAGATTCCAATCATTCTAGTAATCATTCTGTTTCATGTCCCGATCAAGCTATTCCCTGGGATACTGAATATGGTGATGTTTGCAGATTTGTTGAAAAAGCTTCAAAGAACTATGGTGCTTTCCATTTGGCTCACTTGCTTTTGGAAGAGGTTGCAAGTAGAGATCTTCAGCATCAGGATGCATTTGTTAAGTTTCTGGACTTGGAAAAGATGACAAGGAATTGGGGGAAGGATAGGACCCCTGAATGCTGCCTTTTCCTTGCTGAGCTTTATTATGACCTTGGTTCATTGTCTGATGCTTCAAGGTTGTCAGAATTCATGTCCGAGGCATCTTATCATCTTTGTAAAATTCTCGAATCAGTAGCTTTGGAAGATGAAAGTATCTCTGGGCTTAAGAGACTCTTCGGTAATAATGGAATATCAGACGACAATTCTGTTTGCCAGGATGTATCATTAGGTGACAAGTTGTTAGCAAGTTACTCCTTTTGGGTTCGGTTTTTCTGGTTAAGTGGACGATTATCTATTTTAGACGGCAACAAGGAAAAAGCCCACCAAGAATTCTGTATTTCCTTGTCACTTTTGGCAAACAAGGAAAATATCAGTGATTCGCAGCGTGTAATCCGCCTCCCACATTGCAAGGTTGTTAAAGAGTTAACTGTTGATAGGATTCTCCATGAAATTAACATTTTAAAGGTTGATTTCTTGACGCAGAAGACTTTCGGTCAGATGATTGAGAAGGAAATGTATATGGAGTGCATGACCTTGCTTGTTCCGCTTCTATTTGCCACAAGAAATGTGCCCCCTGATGCATTACCTCTACGCTTAGCTAATAAGGGAGGCGAAGGAATTACTTCAGTTGAACTGTCAGCGCTAGACATTTTAATCAAAGCTTGTGAAAAGACAAAACCTGTGGATGTTGACATTTATTTGAATTGTCATCGTCGGAAACTGCAAATTCTTATGGCAGTAGCAGGGATTGATGAATGCCTGGCTTCCTGTAAATCCTTCCTTTCTAAATCGGGGTCAAAAGCTCGCTTCCATTCTGTCATAGATTCAAATGAAAGTTCGAGCAAGCAGTGCTGGAATTTCTTGGTTGCAGAGGAAGTAAAGGCCATTTCTCAATGCGCGTCCCAAGTGAAGAACTTTATTGATCAACCTGGAGCTTCTGACAGCAATTCTGTTCCGATGAGCAGCATAGGTGATCTCCAATGCTTGCTCTTGTCAGTCATGTGTAATGTTGCAAGCATATTCCTCTGTAAGAAATCTCCTGAGCTAGTGACGGCTGATGAAATTGAACAAAGTTGCTTTATTGAAGCTTCCATTGCATTCTGCAAACTTCAACACCTCAACCACATGATACCTGTTAAAACTCAAGTTGACTTAATTGTCACTATGCACGATCTACTGGCGGAATATGGACTCTGCTGTGCGGGTCAGGGTACTGAAAAGGAGGAAGGAATGTTTCTTAAATTTGCAATTAAGCATCTATTGGCCTTGGATATGAAGTTTAAATCTACCTTTAACTTATCAAGTAAAGAAACAACTGAAGACAACGAGCTGCTTGACCTAAATAGTCCTGCCAAAATAACTCTACATGAATCAAAATCAGATACACTAGATGTGGAAATGGTTCACACCGGAAGAGATGAAATCAGTACTGCAGTGAAGGATGTATCAGAAGCAATATCATCAAAAAACATTTTATCTGATAAAGCTCTAGAGGAAGATCTTAATTTGGAATCAGAAGGTAGAAAGCAAGATGAAGATGGTTCTGGTGGTAAGTTCAACAGAGGTGAAGAAGCAAGCGATCAATTGAATGAAGACGAAGATGAAATCATAGAAGATGAAAGGGAGGAGCTTGAGTTGAAAATTGATTATGCCTTGGATCAGTGCTTCTTCTGCTTATATGGTCTAAATATTAGATCTGATTCATCCTATGAAGATGACTTAGCTGTGCACAAAAATACTAGCCCTGGTGATTACCAGACAAAGGAACAATGTGCTGATGTTTTTCAGTACATACTTCCTTATGCAAAGGCTTCTTCTAGGACAGGGCTAGTCAAAGTTCGAAGAGTACTCAGAGCCATACGCAAACACTTTCCACAACCACCAGAAGATGTTTTGGCTGGAAATGCAATAGATAAGTTCTTAGATGATCTCAATTTATGTGAAGATAAGCTCTCAGATGAGGCTGGGTCTGACGGCTTTCTTGAGACCATAACGAAGGTGATACTTCCTGATGAGAGAAGGTTTAAACAACAAAAGTCATCATCCATTGGGAGCTCTGAACCATATCTGGATGTCTATTGCAATTTATATTATTTCCTTGCCCTCTCTGAGGAAATGAGTGCTACAGACAAGTGGCCTGGCTTTGTGCTTACAAAGGAAGGGGAAGAATTTGTACAGCATAATGCGAATCTCTTCAAATATGATTTACTCTACAACCCTCTGCGTTTTGAAAGTTGGCAAAGACTAGGACATATCTATGACGAGGAAGTGGACTTGTTACTAAATGATGGCAGTAAACACATCAATGTGGCAGGATGGAGGAAGAATGTTACATTACCTCAGAGGGTTGAGACAAGTCGAAGGAGGAGTAGGAGGTGTCTGTTAATGAGTTTGGCTTTGGCAAAGACATCAGCTCAGCAGAGTGAGATACACGAGTTATTGGCATTGGTATACTATGATAGCCTTCAAAGCGTGGTGCCATTTTATGATCAACGAACTGTTGTACCCTTGAAGGATGCAGCATGGGTGGTGTTTTGCGAGAATTCGATGAGACACTTTAAAAAGGCTTTTGCTCACAAGCAAGACTGGTCCCATGCTTACTATATTGGGAAGCTCTGTGAAAAGCTTGGGTACTCCTATGAGACATCTTTATCATATTATGATAAAGCTATTGCTCTGAATCCAACAGCTGTAGATCCTGTTTACAGGATGCATGCTTCGCGCCTGAAATTACTTTTTACACGTGGAAAACAAAATCTAGAAGCTTTAAAGGTTCTTTCAGCATATGCCTTTAGTCAATCAACGAAGGATGCTGTCATGACAATGGTAGGTGACATGGATGCGGAAATGTCAAATTCACCAAAGGATAGAAGCACAGAAACAAACTCTGAGAAGGCGAAGCATGAAGATGCGGTTAAATCAGAGGTGTGGAACATGCTTTACAGCGACTGTCTTTGTGCCCTTGAAACTTGTATTGAAGGGGAGCTTAAACATTTTCATAAAGCCAGATATATGCTTGCACAAGGTCTGCATAGAAGAGGGGAAAGTGGTGCATCTGAGAGAGCAAAAGATGAACTCTCTTTTTGCTTCAAGTCATCTCGGTCATCATTTACAATAAATATGTGGGAAATTGATAGTACAGCCAAAAAAGGAAGGCGGAAAACTCCTGGAGTTTGCGGGAGCAAAAGGTCCCTTGAGGTTAACTTACCTGAAAGTTCTAGAAAATTCATTACTTGCATTCGGAAATATCTTCTGTTCTATTTGAAACTGTTGGAGGAGACTGGAGACATCTTTACTCTTGACCGTGCTTATATCTCTCTTCGGTCTGATAAGAGGTTTTCACTATGCATTGAAGATCTTGTTCCAGTTGCCCTTGGGAGGTATGTAAAGGCCCTTGTTTCATCGATCCGCCAAGTTGAAACTGTTGGCTCTGGTGCTGTAGATAATTCCGAGCATATATTGGAGAAAGTGTTTTCTTTGTTCATGGAACAGGGGAACTTATGGCCTGAAATATGTGGTTTGCCTGAGATTAAGGTCACAGAAACATCAGAAAGCAGTTTATATGGATATCTTCACGAACATATCATATCATTAGAGGAAAATGGTAAATTGGACACTCTTGAAGCCATAAATGAGAAGATTCGAAAGCGTTTCAAGAATCCAAAATTGTCAAACAGCAACTGTGCGAAGGTTTGCCGGCATGCATCCATTGCTTGGTGTAGATCTCTTATATTGTGGTTGGCACAGATCACTCCATCACAGTCTGAAATCGCAAGTGAGATCCAGGTTCTAAATCCTTCAGATGGTGGGTTGGAAAATAGCCAGCTGCTCTGTGTTGATTTGCAGACAGATGAATTGTGGAGTTCAGCTTTTGAGGACCCAACCCATTTTAAAAAGCTTGAAGCAAAACGAAATCCTGTTTTCTCTAAAATAAAGAACTTAGTTGTTAAGAAAGCTTCAGATGAAAATTTAGAGACTGCCAGTGCTTTGCTTCGATCTTCGTACAACTTCTATCGTGAGAGCTCAAGTGTAATGCCTTCATCCGGTGTCAATCTGTATTTAGTTTCATCATGGTTAGCAAGGGATACACAATTCAGACCAAGCACGGAGGGGGCTGAAATCCTTGACCTTAGCATTCCAAGGAAGCTTCTCTTGTGGGCTTACACACTATTGCATGGCCGTTACACAAACATCTCTTTTGTTGTAAAGCATTGTGAAGAAAATGCAAGGTCTAAAATGAAAAAAGGAGCAGGAACCTCATCTGTGCCCTCAAACACAAGCATAGCAAACACCACCACTGCTCATACAGCTACAGCATCGGTAGCAGCTTGTGGCAGAGATGAAGTCGGACATAGTGGAACCAGCGACACAGATCCAGCAAACGCAGTAGTATCTACCTCATTGCCTGAGAGCACAATGCAATGTACAAATCAACCACCTTCTGACATGTACCAAACAAGTTCATTTGCTGCTCCCCCACTTCAGCATTGCAACAACCCCACTACAGAGAGGAGCAATACAACAGCAGCAGATGAAGGAGCTTCAGACAAAGTTGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006996 GO:0008150 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0010941 GO:0014823 GO:0016043 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0019904 GO:0022607 GO:0030234 GO:0030346 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031497 GO:0032268 GO:0032269 GO:0032515 GO:0034622 GO:0034724 GO:0034728 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1984

Amino Acids

222.29

Weight (kDa)

5.61

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32820 AT4G32820 AT4G32820
fragaria_vesca	FvH4_2g35140
malus_domestica	MD08G1108900.v1.1
prunus_persica	Prupe.1G443500_v2.0.a1 Prupe.1G443500_v2.0.a1
pyrus_communis	pycom08g09070 pycom10g04690
rosa_chinensis	RchiOBHm_Chr6g0306811
rosa_laevigata	RLG00000010764
rosa_multiflora	Rmu_sc0009381.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161450
rosa_rugosa	Rorug06G0353200 Rorug06G0353300 Rorug06G0353300
rosa_samantha	Rh6AG465000 Rh6BG435800 Rh6CG479400 Rh6DG466300
rosa_wichuraiana	Rw6G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2546
AccB1I	GGYRCC	1 cut(s)	3865
AccB7I	CCANNNNNTGG	2 cut(s)	730, 5103
AccI	GTMKAC	1 cut(s)	3840
AccII	CGCG	4 cut(s)	197, 199, 2288, 4111
AclWI	GGATC	6 cut(s)	1159, 3054, 4079, 4789, 5164, 5756
AcoI	YGGCCR	2 cut(s)	545, 5566
AcuI	CTGAAG	8 cut(s)	275, 1313, 1998, 2727, 5172, 5331, 5855, 5916
AcvI	CACGTG	2 cut(s)	48, 4133
AfeI	AGCGCT	1 cut(s)	2031
AflII	CTTAAG	1 cut(s)	1553
AflIII	ACRYGT	3 cut(s)	643, 4130, 5835
AhdI	GACNNNNNGTC	1 cut(s)	1881
AjnI	CCWGG	9 cut(s)	1066, 1217, 1602, 2148, 2317, 3133, 3526, 4555, 5172
Alw21I	GWGCWC	5 cut(s)	310, 3120, 3446, 5414, 5804
Alw44I	GTGCAC	1 cut(s)	3116
AlwI	GGATC	6 cut(s)	1159, 3054, 4079, 4789, 5164, 5756
AlwNI	CAGNNNCTG	2 cut(s)	4338, 5070
Aor51HI	AGCGCT	1 cut(s)	2031
AoxI	GGCC	8 cut(s)	545, 1107, 2271, 2652, 3524, 4779, 4892, 5566
ApaLI	GTGCAC	1 cut(s)	3116
AseI	ATTAAT	1 cut(s)	860
Asp700I	GAANNNNTTC	6 cut(s)	114, 168, 1877, 2011, 2790, 3581
AspLEI	GCGC	4 cut(s)	199, 2032, 2288, 4113
AspS9I	GGNCC	5 cut(s)	1398, 3978, 4578, 4780, 5266
AsuII	TTCGAA	2 cut(s)	3229, 5032
AvaII	GGWCC	4 cut(s)	1398, 3978, 4578, 5266
BaeGI	GKGCMC	4 cut(s)	1962, 3120, 4351, 5658
BaeI	ACNNNNGTAYC	4 cut(s)	3809, 3842, 3876, 3909
BalI	TGGCCA	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	3865
BanII	GRGCYC	4 cut(s)	57, 398, 3446, 5414
BarI	GAAGNNNNNNTAC	2 cut(s)	3546, 3578
BauI	CACGAG	2 cut(s)	558, 3821
BbrPI	CACGTG	2 cut(s)	48, 4133
BbsI	GAAGAC	4 cut(s)	995, 1880, 2715, 2988
Bbv12I	GWGCWC	5 cut(s)	310, 3120, 3446, 5414, 5804
BccI	CCATC	9 cut(s)	200, 385, 556, 814, 2921, 3671, 3699, 5152, 5186
BceAI	ACGGC	4 cut(s)	1708, 2457, 3379, 5553
BciT130I	CCWGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
BciVI	GTATCC	2 cut(s)	1216, 5467
BclI	TGATCA	2 cut(s)	2311, 3877
BfmI	CTRYAG	8 cut(s)	330, 808, 2820, 3513, 4080, 4827, 5700, 5892
BfoI	RGCGCY	1 cut(s)	2033
BfrI	CTTAAG	1 cut(s)	1553
BfuI	GTATCC	2 cut(s)	1216, 5467
BglII	AGATCT	8 cut(s)	812, 842, 1078, 1324, 2887, 3083, 4744, 5111
BlpI	GCTNAGC	3 cut(s)	1425, 1984, 3804
BmcAI	AGTACT	3 cut(s)	1036, 2818, 3237
Bme1390I	CCNGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
Bme18I	GGWCC	4 cut(s)	1398, 3978, 4578, 5266
BmeRI	GACNNNNNGTC	1 cut(s)	1881
BmgT120I	GGNCC	5 cut(s)	1398, 3978, 4578, 4780, 5266
BmrFI	CCNGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
BoxI	GACNNNNGTC	1 cut(s)	999
BpiI	GAAGAC	4 cut(s)	995, 1880, 2715, 2988
BpmI	CTGGAG	4 cut(s)	867, 2340, 4578, 4692
Bpu10I	CCTNAGC	5 cut(s)	58, 78, 1104, 2430, 5519
Bpu1102I	GCTNAGC	3 cut(s)	1425, 1984, 3804
Bpu14I	TTCGAA	2 cut(s)	3229, 5032
BpuEI	CTTGAG	6 cut(s)	666, 2517, 3041, 3392, 4604, 5398
Bsa29I	ATCGAT	1 cut(s)	4793
BsaAI	YACGTR	2 cut(s)	48, 4133
BsaBI	GATNNNNATC	2 cut(s)	225, 1170
BsaI	GGTCTC	1 cut(s)	3368
BsaWI	WCCGGW	2 cut(s)	2798, 5432
BsaXI	ACNNNNNCTCC	6 cut(s)	458, 488, 3008, 3038, 4844, 4874
Bse118I	RCCGGY	1 cut(s)	5085
Bse1I	ACTGG	7 cut(s)	599, 973, 2571, 3980, 4675, 4754, 5370
Bse3DI	GCAATG	6 cut(s)	1792, 2481, 5097, 5789, 5816, 5875
Bse8I	GATNNNNATC	2 cut(s)	225, 1170
BseBI	CCWGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
BseCI	ATCGAT	1 cut(s)	4793
BseJI	GATNNNNATC	2 cut(s)	225, 1170
BseMI	GCAATG	6 cut(s)	1792, 2481, 5097, 5789, 5816, 5875
BseNI	ACTGG	7 cut(s)	599, 973, 2571, 3980, 4675, 4754, 5370
BseRI	GAGGAG	5 cut(s)	710, 3029, 3769, 4679, 5914
BseSI	GKGCMC	4 cut(s)	1962, 3120, 4351, 5658
BseYI	CCCAGC	1 cut(s)	3353
BsgI	GTGCAG	1 cut(s)	460
Bsh1236I	CGCG	4 cut(s)	197, 199, 2288, 4111
BshFI	GGCC	8 cut(s)	547, 1109, 2273, 2654, 3526, 4781, 4894, 5568
BshNI	GGYRCC	1 cut(s)	3865
BshVI	ATCGAT	1 cut(s)	4793
BsiHKAI	GWGCWC	5 cut(s)	310, 3120, 3446, 5414, 5804
BsiSI	CCGG	3 cut(s)	2799, 5086, 5433
BslFI	GGGAC	4 cut(s)	1185, 2275, 3964, 4564
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	4 cut(s)	1185, 2275, 3964, 4564
BsmI	GAATGC	6 cut(s)	832, 1412, 2150, 2486, 4626, 5523
BsnI	GGCC	8 cut(s)	547, 1109, 2273, 2654, 3526, 4781, 4894, 5568
Bso31I	GGTCTC	1 cut(s)	3368
Bsp119I	TTCGAA	2 cut(s)	3229, 5032
Bsp1407I	TGTACA	2 cut(s)	3562, 5813
Bsp1720I	GCTNAGC	3 cut(s)	1425, 1984, 3804
BspANI	GGCC	8 cut(s)	547, 1109, 2273, 2654, 3526, 4781, 4894, 5568
BspDI	ATCGAT	1 cut(s)	4793
BspFNI	CGCG	4 cut(s)	197, 199, 2288, 4111
BspHI	TCATGA	2 cut(s)	106, 4206
BspMAI	CTGCAG	1 cut(s)	2824
BspPI	GGATC	6 cut(s)	1159, 3054, 4079, 4789, 5164, 5756
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	2 cut(s)	3229, 5032
BspT107I	GGYRCC	1 cut(s)	3865
BspTI	CTTAAG	1 cut(s)	1553
BspTNI	GGTCTC	1 cut(s)	3368
BsrDI	GCAATG	6 cut(s)	1792, 2481, 5097, 5789, 5816, 5875
BsrFI	RCCGGY	1 cut(s)	5085
BsrGI	TGTACA	2 cut(s)	3562, 5813
BsrI	ACTGG	7 cut(s)	599, 973, 2571, 3980, 4675, 4754, 5370
BssAI	RCCGGY	1 cut(s)	5085
BssNAI	GTATAC	1 cut(s)	3841
BssSI	CACGAG	2 cut(s)	558, 3821
BssT1I	CCWWGG	6 cut(s)	1110, 1441, 2655, 3042, 4762, 5528
Bst1107I	GTATAC	1 cut(s)	3841
Bst2BI	CACGAG	2 cut(s)	558, 3821
Bst2UI	CCWGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
Bst4CI	ACNGT	9 cut(s)	1819, 2025, 3889, 4340, 4659, 4694, 4813, 5072, 5151
BstAFI	CTTAAG	1 cut(s)	1553
BstAPI	GCANNNNNTGC	3 cut(s)	767, 2238, 5099
BstAUI	TGTACA	2 cut(s)	3562, 5813
BstBAI	YACGTR	2 cut(s)	48, 4133
BstBI	TTCGAA	2 cut(s)	3229, 5032
BstENI	CCTNNNNNAGG	1 cut(s)	3497
BstFNI	CGCG	4 cut(s)	197, 199, 2288, 4111
BstH2I	RGCGCY	1 cut(s)	2033
BstHHI	GCGC	4 cut(s)	199, 2032, 2288, 4113
BstNI	CCWGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
BstNSI	RCATGY	7 cut(s)	513, 572, 647, 4106, 4327, 5093, 5839
BstPAI	GACNNNNGTC	1 cut(s)	999
BstSCI	CCNGG	9 cut(s)	1066, 1217, 1602, 2148, 2317, 3133, 3526, 4555, 5172
BstSFI	CTRYAG	8 cut(s)	330, 808, 2820, 3513, 4080, 4827, 5700, 5892
BstSLI	GKGCMC	4 cut(s)	1962, 3120, 4351, 5658
BstUI	CGCG	4 cut(s)	197, 199, 2288, 4111
BstV2I	GAAGAC	4 cut(s)	995, 1880, 2715, 2988
BstZ17I	GTATAC	1 cut(s)	3841
Bsu15I	ATCGAT	1 cut(s)	4793
BsuI	GTATCC	2 cut(s)	1216, 5467
BsuRI	GGCC	8 cut(s)	547, 1109, 2273, 2654, 3526, 4781, 4894, 5568
BsuTUI	ATCGAT	1 cut(s)	4793
BtsI	GCAGTG	3 cut(s)	2243, 2829, 5685
BtsIMutI	CAGTG	9 cut(s)	251, 966, 1130, 1768, 2243, 2829, 3056, 5377, 5685
CaiI	CAGNNNCTG	2 cut(s)	4338, 5070
CciI	TCATGA	2 cut(s)	106, 4206
CfoI	GCGC	4 cut(s)	199, 2032, 2288, 4113
Cfr10I	RCCGGY	1 cut(s)	5085
Cfr13I	GGNCC	5 cut(s)	1398, 3978, 4578, 4780, 5266
ClaI	ATCGAT	1 cut(s)	4793
CseI	GACGC	3 cut(s)	758, 1876, 2277
CspCI	CAANNNNNGTGG	2 cut(s)	2052, 2087
DraI	TTTAAA	6 cut(s)	1851, 2671, 3415, 3949, 4158, 5281
DrdI	GACNNNNNNGTC	1 cut(s)	2546
DriI	GACNNNNNGTC	1 cut(s)	1881
DseDI	GACNNNNNNGTC	1 cut(s)	2546
EaeI	YGGCCR	2 cut(s)	545, 5566
Eam1105I	GACNNNNNGTC	1 cut(s)	1881
EciI	GGCGGA	6 cut(s)	1045, 1164, 1772, 2585, 4561, 4787
Ecl136II	GAGCTC	2 cut(s)	3444, 5412
Eco130I	CCWWGG	6 cut(s)	1110, 1441, 2655, 3042, 4762, 5528
Eco24I	GRGCYC	4 cut(s)	57, 398, 3446, 5414
Eco31I	GGTCTC	1 cut(s)	3368
Eco32I	GATATC	2 cut(s)	787, 4958
Eco47I	GGWCC	4 cut(s)	1398, 3978, 4578, 5266
Eco47III	AGCGCT	1 cut(s)	2031
Eco53kI	GAGCTC	2 cut(s)	3444, 5412
Eco57I	CTGAAG	8 cut(s)	275, 1313, 1998, 2727, 5172, 5331, 5855, 5916
Eco72I	CACGTG	2 cut(s)	48, 4133
EcoICRI	GAGCTC	2 cut(s)	3444, 5412
EcoNI	CCTNNNNNAGG	1 cut(s)	3497
EcoO109I	RGGNCCY	4 cut(s)	1398, 4578, 4780, 5266
EcoRI	GAATTC	4 cut(s)	1010, 1475, 1718, 3931
EcoRII	CCWGG	9 cut(s)	1066, 1217, 1602, 2148, 2317, 3133, 3526, 4555, 5172
EcoRV	GATATC	2 cut(s)	787, 4958
EcoT14I	CCWWGG	6 cut(s)	1110, 1441, 2655, 3042, 4762, 5528
EcoT22I	ATGCAT	5 cut(s)	1345, 1972, 4104, 4739, 5095
EcoT38I	GRGCYC	4 cut(s)	57, 398, 3446, 5414
ErhI	CCWWGG	6 cut(s)	1110, 1441, 2655, 3042, 4762, 5528
Esp3I	CGTCTC	1 cut(s)	656
FalI	AAGNNNNNCTT	8 cut(s)	1065, 1097, 1547, 1579, 4359, 4391, 5525, 5557
FaqI	GGGAC	4 cut(s)	1185, 2275, 3964, 4564
FauI	CCCGC	3 cut(s)	192, 2584, 4559
FauNDI	CATATG	1 cut(s)	4174
FbaI	TGATCA	2 cut(s)	2311, 3877
FblI	GTMKAC	1 cut(s)	3840
FriOI	GRGCYC	4 cut(s)	57, 398, 3446, 5414
GlaI	GCGC	4 cut(s)	198, 2031, 2287, 4112
GsaI	CCCAGC	1 cut(s)	3357
GsuI	CTGGAG	4 cut(s)	867, 2340, 4578, 4692
HaeII	RGCGCY	1 cut(s)	2033
HaeIII	GGCC	8 cut(s)	547, 1109, 2273, 2654, 3526, 4781, 4894, 5568
HapII	CCGG	3 cut(s)	2799, 5086, 5433
HgaI	GACGC	3 cut(s)	758, 1876, 2277
HhaI	GCGC	4 cut(s)	199, 2032, 2288, 4113
Hin6I	GCGC	4 cut(s)	197, 2030, 2286, 4111
HinP1I	GCGC	4 cut(s)	197, 2030, 2286, 4111
HincII	GTYRAC	6 cut(s)	664, 1815, 2080, 2539, 4591, 5944
HindII	GTYRAC	6 cut(s)	664, 1815, 2080, 2539, 4591, 5944
HindIII	AAGCTT	8 cut(s)	1260, 2049, 2475, 4013, 4152, 5285, 5343, 5534
HpaI	GTTAAC	2 cut(s)	1815, 4591
HpaII	CCGG	3 cut(s)	2799, 5086, 5433
Hpy99I	CGWCG	1 cut(s)	2106
HpyCH4III	ACNGT	9 cut(s)	1819, 2025, 3889, 4340, 4659, 4694, 4813, 5072, 5151
HpyCH4IV	ACGT	3 cut(s)	47, 412, 4132
HpySE526I	ACGT	3 cut(s)	47, 412, 4132
HspAI	GCGC	4 cut(s)	197, 2030, 2286, 4111
KroI	GCCGGC	1 cut(s)	5085
KroNI	GCCGGC	1 cut(s)	5087
Ksp22I	TGATCA	2 cut(s)	2311, 3877
KspAI	GTTAAC	2 cut(s)	1815, 4591
LguI	GCTCTTC	1 cut(s)	315
MaeII	ACGT	3 cut(s)	47, 412, 4132
MfeI	CAATTG	4 cut(s)	9, 582, 933, 2972
MlsI	TGGCCA	1 cut(s)	547
MluNI	TGGCCA	1 cut(s)	547
MlyI	GAGTC	4 cut(s)	29, 599, 1554, 2574
MmeI	TCCRAC	6 cut(s)	456, 2084, 4097, 4641, 5181, 5716
Mox20I	TGGCCA	1 cut(s)	547
Mph1103I	ATGCAT	5 cut(s)	1345, 1972, 4104, 4739, 5095
MroNI	GCCGGC	1 cut(s)	5085
MroXI	GAANNNNTTC	6 cut(s)	114, 168, 1877, 2011, 2790, 3581
MscI	TGGCCA	1 cut(s)	547
MslI	CAYNNNNRTG	8 cut(s)	382, 558, 1338, 3645, 3693, 3695, 4211, 4296
Msp20I	TGGCCA	1 cut(s)	547
MspA1I	CMGCKG	2 cut(s)	4079, 5215
MspCI	CTTAAG	1 cut(s)	1553
MspI	CCGG	3 cut(s)	2799, 5086, 5433
MspR9I	CCNGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
MssI	GTTTAAAC	1 cut(s)	3415
MunI	CAATTG	4 cut(s)	9, 582, 933, 2972
Mva1269I	GAATGC	6 cut(s)	832, 1412, 2150, 2486, 4626, 5523
MvaI	CCWGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
MvnI	CGCG	4 cut(s)	197, 199, 2288, 4111
NaeI	GCCGGC	1 cut(s)	5087
NdeI	CATATG	1 cut(s)	4174
NgoMIV	GCCGGC	1 cut(s)	5085
NmuCI	GTSAC	6 cut(s)	1619, 1734, 2437, 2548, 4220, 4924
NsiI	ATGCAT	5 cut(s)	1345, 1972, 4104, 4739, 5095
NspI	RCATGY	7 cut(s)	513, 572, 647, 4106, 4327, 5093, 5839
NspV	TTCGAA	2 cut(s)	3229, 5032
PaeI	GCATGC	3 cut(s)	513, 4106, 5093
PagI	TCATGA	2 cut(s)	106, 4206
PasI	CCCWGGG	1 cut(s)	1218
PciI	ACATGT	2 cut(s)	643, 5835
PciSI	GCTCTTC	1 cut(s)	315
PctI	GAATGC	6 cut(s)	832, 1412, 2150, 2486, 4626, 5523
PdiI	GCCGGC	1 cut(s)	5087
PdmI	GAANNNNTTC	6 cut(s)	114, 168, 1877, 2011, 2790, 3581
PflMI	CCANNNNNTGG	2 cut(s)	730, 5103
PfoI	TCCNGGA	1 cut(s)	4555
PleI	GAGTC	4 cut(s)	29, 598, 1554, 2574
PmaCI	CACGTG	2 cut(s)	48, 4133
PmeI	GTTTAAAC	1 cut(s)	3415
PmlI	CACGTG	2 cut(s)	48, 4133
PpsI	GAGTC	4 cut(s)	29, 598, 1554, 2574
Ppu21I	YACGTR	2 cut(s)	48, 4133
PpuMI	RGGWCCY	3 cut(s)	1398, 4578, 5266
PscI	ACATGT	2 cut(s)	643, 5835
PshAI	GACNNNNGTC	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	860
Psp124BI	GAGCTC	2 cut(s)	3446, 5414
Psp5II	RGGWCCY	3 cut(s)	1398, 4578, 5266
Psp6I	CCWGG	9 cut(s)	1066, 1217, 1602, 2148, 2317, 3133, 3526, 4555, 5172
PspCI	CACGTG	2 cut(s)	48, 4133
PspFI	CCCAGC	1 cut(s)	3353
PspGI	CCWGG	9 cut(s)	1066, 1217, 1602, 2148, 2317, 3133, 3526, 4555, 5172
PspPI	GGNCC	5 cut(s)	1398, 3978, 4578, 4780, 5266
PspPPI	RGGWCCY	3 cut(s)	1398, 4578, 5266
PsrI	GAACNNNNNNTAC	2 cut(s)	4313, 4345
PstI	CTGCAG	1 cut(s)	2824
PstNI	CAGNNNCTG	2 cut(s)	4338, 5070
PvuII	CAGCTG	2 cut(s)	4079, 5215
RseI	CAYNNNNRTG	8 cut(s)	382, 558, 1338, 3645, 3693, 3695, 4211, 4296
SacI	GAGCTC	2 cut(s)	3446, 5414
SapI	GCTCTTC	1 cut(s)	315
Sau96I	GGNCC	5 cut(s)	1398, 3978, 4578, 4780, 5266
ScaI	AGTACT	3 cut(s)	1036, 2818, 3237
SchI	GAGTC	4 cut(s)	29, 599, 1554, 2574
ScrFI	CCNGG	9 cut(s)	1068, 1219, 1604, 2150, 2319, 3135, 3528, 4557, 5174
SfcI	CTRYAG	8 cut(s)	330, 808, 2820, 3513, 4080, 4827, 5700, 5892
SfuI	TTCGAA	2 cut(s)	3229, 5032
SinI	GGWCC	4 cut(s)	1398, 3978, 4578, 5266
SmiMI	CAYNNNNRTG	8 cut(s)	382, 558, 1338, 3645, 3693, 3695, 4211, 4296
SmlI	CTYRAG	7 cut(s)	681, 1553, 2532, 3020, 3371, 4583, 5413
SmoI	CTYRAG	7 cut(s)	681, 1553, 2532, 3020, 3371, 4583, 5413
SphI	GCATGC	3 cut(s)	513, 4106, 5093
SspI	AATATT	1 cut(s)	3079
SstI	GAGCTC	2 cut(s)	3446, 5414
StyD4I	CCNGG	9 cut(s)	1066, 1217, 1602, 2148, 2317, 3133, 3526, 4555, 5172
StyI	CCWWGG	6 cut(s)	1110, 1441, 2655, 3042, 4762, 5528
TaaI	ACNGT	9 cut(s)	1819, 2025, 3889, 4340, 4659, 4694, 4813, 5072, 5151
TaiI	ACGT	3 cut(s)	50, 415, 4135
TaqII	GACCGA	3 cut(s)	1871, 4479, 4701
TatI	WGTACW	7 cut(s)	1034, 2816, 3177, 3235, 3562, 4526, 5813
TscAI	CASTG	9 cut(s)	258, 973, 1130, 1768, 2243, 2829, 3056, 5377, 5692
TseFI	GTSAC	6 cut(s)	1619, 1734, 2437, 2548, 4220, 4924
Tsp45I	GTSAC	6 cut(s)	1619, 1734, 2437, 2548, 4220, 4924
TspGWI	ACGGA	3 cut(s)	638, 786, 5510
TspRI	CASTG	9 cut(s)	258, 973, 1130, 1768, 2243, 2829, 3056, 5377, 5692
Van91I	CCANNNNNTGG	2 cut(s)	730, 5103
Vha464I	CTTAAG	1 cut(s)	1553
VneI	GTGCAC	1 cut(s)	3116
VpaK11BI	GGWCC	4 cut(s)	1398, 3978, 4578, 5266
VspI	ATTAAT	1 cut(s)	860
XagI	CCTNNNNNAGG	1 cut(s)	3497
XbaI	TCTAGA	6 cut(s)	691, 1006, 1129, 2878, 4147, 4607
XceI	RCATGY	7 cut(s)	513, 572, 647, 4106, 4327, 5093, 5839
XmiI	GTMKAC	1 cut(s)	3840
XmnI	GAANNNNTTC	6 cut(s)	114, 168, 1877, 2011, 2790, 3581
ZrmI	AGTACT	3 cut(s)	1036, 2818, 3237
Zsp2I	ATGCAT	5 cut(s)	1345, 1972, 4104, 4739, 5095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.