Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010312

Physical Location & Seq

Genomic Coordinates Reverse (-)

50193824 .. 50195249

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGGTAGACCCGTACGACATCGCGCCGTGCTCTTCCCTTGCCGTTTCTTCAATCGTCAACGTCGGAACGGCTGGTGCCATTTGGGGTTTATGCTCCGCTCCCCACGATGCTCATAAATTCGGCCTGACTGGAATAAATCGAGCTGGGTTTGTGGCAAACTCGGTTGCCAGGTGTACCTTTCAATGTGCACTTATTGCTGGAATTTCTACTTCTGTTCACTGTGGAATGCAAAGATATCGGGGGAAGGATGATTGGGTGAATGGTTTGGTTGCTGGGGCTATGGCAGGGGGAGCTATTGCTGCTCTATCAAGAAGCTGGAAACAGGTGATACCTACAGCTTGTCTGGTTTCTGCGTTGAAAATTGCCGCCGACTATGGTAGAAAAAATGTGAATACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006996 GO:0008150 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0010941 GO:0014823 GO:0016043 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0019904 GO:0022607 GO:0030234 GO:0030346 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031497 GO:0032268 GO:0032269 GO:0032515 GO:0034622 GO:0034724 GO:0034728 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

13.84

Weight (kDa)

8.85

Isoelectric Point (pI)

16.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	16 - 118	4.5e-11	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32820 AT4G32820 AT4G32820
fragaria_vesca	FvH4_2g35140
malus_domestica	MD08G1108900.v1.1
prunus_persica	Prupe.1G443500_v2.0.a1 Prupe.1G443500_v2.0.a1
pyrus_communis	pycom08g09070 pycom10g04690
rosa_chinensis	RchiOBHm_Chr6g0306811
rosa_laevigata	RLG00000010764
rosa_multiflora	Rmu_sc0009381.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161450
rosa_rugosa	Rorug06G0353200 Rorug06G0353300 Rorug06G0353300
rosa_samantha	Rh6AG465000 Rh6BG435800 Rh6CG479400 Rh6DG466300
rosa_wichuraiana	Rw6G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	99, 369
AcsI	RAATTY	2 cut(s)	119, 204
AfaI	GTAC	2 cut(s)	17, 178
AgsI	TTSAA	3 cut(s)	54, 185, 361
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	146, 296, 318, 341
AluI	AGCT	4 cut(s)	146, 296, 318, 341
Alw21I	GWGCWC	2 cut(s)	35, 193
Alw44I	GTGCAC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	119, 204
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	271, 340
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	35, 193
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	3 cut(s)	13, 29, 87
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	172
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	2 cut(s)	303, 369
BlsI	GCNGC	2 cut(s)	304, 370
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	146, 275
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	35, 193
BsiWI	CGTACG	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	35, 193
BspACI	CCGC	2 cut(s)	99, 369
BspANI	GGCC	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 293, 302
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	16, 177
CviJI	RGCY	7 cut(s)	74, 126, 146, 281, 296, 318, 341
CviKI_1	RGCY	7 cut(s)	74, 126, 146, 281, 296, 318, 341
CviQI	GTAC	2 cut(s)	16, 177
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	4 cut(s)	94, 117, 284, 378
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	303, 369
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	303, 369
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	303, 369
GsaI	CCCAGC	2 cut(s)	150, 279
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HphI	GGTGA	2 cut(s)	271, 340
Hpy166II	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	312, 402
Hpy8I	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	191, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 293, 302
HpySE526I	ACGT	1 cut(s)	63
HspAI	GCGC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	101, 106, 293
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	101
MboII	GAAGA	2 cut(s)	27, 42
MhlI	GDGCHC	2 cut(s)	35, 193
MluCI	AATT	3 cut(s)	119, 204, 363
MmeI	TCCRAC	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	197, 293, 302
NlaIV	GGNNCC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	304, 370
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	2 cut(s)	146, 275
PspGI	CCWGG	1 cut(s)	170
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	17, 178
RsaNI	GTAC	2 cut(s)	16, 177
SapI	GCTCTTC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	303, 369
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	35, 193
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	119, 204, 363
SsiI	CCGC	2 cut(s)	99, 369
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	119, 204, 363
TauI	GCSGC	1 cut(s)	371
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	1 cut(s)	302
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	189
XapI	RAATTY	2 cut(s)	119, 204
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.