Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Reverse (-)

7119619 .. 7122500

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTACTCTCTCCCCCTCTCTCCCTCTCTCTCTCCCCCCCCCGTCTCTCTCTCTCTCTCTCTCTCCCTCCCCCCTCTATTTACCCATCTCTCTATTTATTTTATTCTACGTCTATCATTAAAGATGGAGATGACTGACCGGAGAGCTGAAGATAAGGCCATCACCGGCCAAGCCCAAAACACGAGTATCGCAGACTTTGATCCCCCAAAGAAAGCCAAGACAAAGAAGTTTGCCATTGCCTGTGGCGTTTTGGCTTCAATGACTTCAATCCTACTTGGTTATGATATTGGTGTAATGAGTGGAGCGTCACTCTTCATTAAAGAAAACCTCAAAATCAGTGATGTTCAAGTCGAAATTCTGAACGGTACTTTGAACCTCTACTCCCTTATTGGCTCCGCCTTGGCTGGTAGAACCTCCGACTGGATTGGACGCCGGTACACCATAGTACTTGCAGGAACAATCTTCTTTATTGGAGCTCTCCTCATGGGCTTTGCCCCTAACTATGCCTTCCTCATGTTCGGACGATTCGTTGCCGGAGTTGGAGTTGGCTACGCTCTTATGATAGCTCCCGTCTACACTGCGGAGATCTCTCCAGCCTCATATCGTGGCTTCCTCACATCTTTTCCCGAGGTGTTTGTTAATATTGGCATATTACTGGGGTACGTATCCAACTATGCCTTCTCCAAGCTCCCCATTCACTTGAACTGGAGGATCATGCTCGGTGTCGGCGCATTTCCATCTGTTATTCTTGCCGTCGGTGTCTTAGCCATGCCCGAGTCGCCTCGTTGGCTCGTCATGCAAGGGCGACTTGGAGACGCCAAGCGAGTTCTACATAAAACGTCAGAATCCATAGAAGAGTGTCAGCTTAGACTAGATGACATCAAAGAAGCCGCAGGAATCCCCAAAGAGTCCAACGACGATGTTGTTCAGGTATCTAAACGCAGCCACGGTGAAGGCGTGTGGAAAGAATTGCTCCTTCATCCCACACCAGCCGTTCGCCATATTTTAATCGCAGCTCTTGGTATCCACTTCTTTGAACAATCGTCAGGTATAGACTCTGTCGTTTTGTACAGCCCCAGGATCTTCGAAAAGGCAGGAATCACCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

370

Amino Acids

40.19

Weight (kDa)

8.9

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	83 - 368	1.1e-64	Sugar (and other) transporter
MFS_1	PF07690	88 - 359	7.8e-23	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	3 cut(s)	396, 581, 891
AclWI	GGATC	3 cut(s)	194, 719, 1088
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	2 cut(s)	430, 816
AfaI	GTAC	6 cut(s)	5, 367, 437, 447, 662, 1070
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	6 cut(s)	258, 267, 347, 373, 703, 1037
AjnI	CCWGG	1 cut(s)	1076
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	6 cut(s)	146, 476, 566, 688, 865, 1016
AluI	AGCT	6 cut(s)	146, 476, 566, 688, 865, 1016
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	49, 807
AlwI	GGATC	3 cut(s)	194, 719, 1088
Ama87I	CYCGRG	2 cut(s)	626, 773
AoxI	GGCC	2 cut(s)	156, 166
ApeKI	GCWGC	2 cut(s)	942, 1013
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	731
AsuHPI	GGTGA	3 cut(s)	154, 962, 1093
AsuII	TTCGAA	1 cut(s)	1086
AvaI	CYCGRG	2 cut(s)	626, 773
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BanII	GRGCYC	1 cut(s)	478
BauI	CACGAG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	954, 1025
BccI	CCATC	4 cut(s)	93, 118, 167, 745
BceAI	ACGGC	2 cut(s)	737, 977
BciT130I	CCWGG	1 cut(s)	1078
BciVI	GTATCC	2 cut(s)	676, 1034
BcoDI	GTCTC	2 cut(s)	49, 807
BfaI	CTAG	1 cut(s)	872
BfuI	GTATCC	2 cut(s)	676, 1034
BglI	GCCNNNNNGGC	1 cut(s)	787
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	3 cut(s)	891, 943, 1014
BlsI	GCNGC	3 cut(s)	892, 944, 1015
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	1078
BmeT110I	CYCGRG	2 cut(s)	626, 773
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	1078
BmrI	ACTGGG	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	665
BplI	GAGNNNNNCTC	4 cut(s)	294, 326, 465, 497
BpmI	CTGGAG	2 cut(s)	576, 727
Bpu14I	TTCGAA	1 cut(s)	1086
BsaAI	YACGTR	1 cut(s)	664
BsaHI	GRCGYC	2 cut(s)	430, 816
BsaJI	CCNNGG	4 cut(s)	399, 627, 946, 1076
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	4 cut(s)	365, 395, 528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse118I	RCCGGY	2 cut(s)	164, 432
Bse1I	ACTGG	3 cut(s)	425, 660, 710
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	1078
BseDI	CCNNGG	4 cut(s)	399, 627, 946, 1076
BseGI	GGATG	1 cut(s)	979
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	425, 660, 710
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	954, 1025
BshFI	GGCC	2 cut(s)	158, 168
BsiHKAI	GWGCWC	1 cut(s)	478
BsiHKCI	CYCGRG	2 cut(s)	626, 773
BsiSI	CCGG	4 cut(s)	139, 165, 433, 534
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	49, 807
BsmBI	CGTCTC	2 cut(s)	49, 807
BsnI	GGCC	2 cut(s)	158, 168
BsoBI	CYCGRG	2 cut(s)	626, 773
Bsp119I	TTCGAA	1 cut(s)	1086
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	4 cut(s)	199, 585, 711, 1080
BspACI	CCGC	3 cut(s)	396, 581, 891
BspANI	GGCC	2 cut(s)	158, 168
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	3 cut(s)	194, 719, 1088
BspT104I	TTCGAA	1 cut(s)	1086
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	164, 432
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	3 cut(s)	425, 660, 710
BssAI	RCCGGY	2 cut(s)	164, 432
BssECI	CCNNGG	4 cut(s)	399, 627, 946, 1076
BssMI	GATC	4 cut(s)	199, 585, 711, 1080
BssNI	GRCGYC	2 cut(s)	430, 816
BssSI	CACGAG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	1078
Bst4CI	ACNGT	2 cut(s)	365, 950
Bst6I	CTCTTC	2 cut(s)	317, 849
BstACI	GRCGYC	2 cut(s)	430, 816
BstAUI	TGTACA	1 cut(s)	1068
BstBAI	YACGTR	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	1086
BstDEI	CTNAG	2 cut(s)	763, 866
BstDSI	CCRYGG	1 cut(s)	946
BstF5I	GGATG	1 cut(s)	979
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	4 cut(s)	202, 588, 714, 1083
BstMAI	GTCTC	2 cut(s)	49, 807
BstMBI	GATC	4 cut(s)	199, 585, 711, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	778, 787, 796
BstNI	CCWGG	1 cut(s)	1078
BstSCI	CCNGG	1 cut(s)	1076
BstSNI	TACGTA	1 cut(s)	664
BstV1I	GCAGC	2 cut(s)	954, 1025
BstX2I	RGATCY	2 cut(s)	585, 1080
BstYI	RGATCY	2 cut(s)	585, 1080
BsuI	GTATCC	2 cut(s)	676, 1034
BsuRI	GGCC	2 cut(s)	158, 168
BtgI	CCRYGG	1 cut(s)	946
BtsCI	GGATG	1 cut(s)	979
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	343, 576
CfoI	GCGC	1 cut(s)	731
Cfr10I	RCCGGY	2 cut(s)	164, 432
CseI	GACGC	3 cut(s)	294, 438, 824
Csp6I	GTAC	6 cut(s)	4, 366, 436, 446, 661, 1069
CviAII	CATG	5 cut(s)	484, 514, 715, 769, 796
CviQI	GTAC	6 cut(s)	4, 366, 436, 446, 661, 1069
DdeI	CTNAG	2 cut(s)	763, 866
DpnI	GATC	4 cut(s)	201, 587, 713, 1082
DpnII	GATC	4 cut(s)	199, 585, 711, 1080
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	317, 849
EarI	CTCTTC	2 cut(s)	317, 849
EciI	GGCGGA	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	476
Eco105I	TACGTA	1 cut(s)	664
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	626, 773
EcoICRI	GAGCTC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	1076
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	2 cut(s)	49, 807
FaeI	CATG	5 cut(s)	487, 517, 718, 772, 799
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FatI	CATG	5 cut(s)	483, 513, 714, 768, 795
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	3 cut(s)	891, 943, 1014
FokI	GGATG	1 cut(s)	966
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	3 cut(s)	891, 943, 1014
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	3 cut(s)	891, 943, 1014
GsuI	CTGGAG	2 cut(s)	576, 727
HaeIII	GGCC	2 cut(s)	158, 168
HapII	CCGG	4 cut(s)	139, 165, 433, 534
HgaI	GACGC	3 cut(s)	294, 438, 824
HhaI	GCGC	1 cut(s)	731
Hin1I	GRCGYC	2 cut(s)	430, 816
Hin1II	CATG	5 cut(s)	487, 517, 718, 772, 799
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HinfI	GANTC	7 cut(s)	525, 776, 845, 897, 908, 1055, 1098
HpaII	CCGG	4 cut(s)	139, 165, 433, 534
HphI	GGTGA	3 cut(s)	154, 962, 1093
Hpy166II	GTNNAC	2 cut(s)	438, 574
Hpy188I	TCNGA	4 cut(s)	360, 418, 521, 844
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	2 cut(s)	438, 574
Hpy99I	CGWCG	2 cut(s)	758, 920
HpyAV	CCTTC	4 cut(s)	517, 688, 947, 986
HpyCH4III	ACNGT	2 cut(s)	365, 950
HpyCH4IV	ACGT	3 cut(s)	109, 663, 839
HpyCH4V	TGCA	2 cut(s)	452, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	778, 787, 796
HpyF3I	CTNAG	2 cut(s)	763, 866
HpySE526I	ACGT	3 cut(s)	109, 663, 839
Hsp92I	GRCGYC	2 cut(s)	430, 816
Hsp92II	CATG	5 cut(s)	487, 517, 718, 772, 799
HspAI	GCGC	1 cut(s)	729
Kzo9I	GATC	4 cut(s)	199, 585, 711, 1080
LmnI	GCTCC	6 cut(s)	302, 398, 473, 571, 693, 978
Lsp1109I	GCAGC	2 cut(s)	954, 1025
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	3 cut(s)	109, 663, 839
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	4 cut(s)	201, 587, 713, 1082
MboI	GATC	4 cut(s)	199, 585, 711, 1080
MboII	GAAGA	5 cut(s)	161, 304, 454, 866, 1075
MflI	RGATCY	2 cut(s)	585, 1080
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	2 cut(s)	354, 968
MlyI	GAGTC	3 cut(s)	785, 917, 1049
MmeI	TCCRAC	4 cut(s)	441, 520, 693, 936
MseI	TTAA	4 cut(s)	119, 318, 639, 1007
MspI	CCGG	4 cut(s)	139, 165, 433, 534
MspR9I	CCNGG	1 cut(s)	1078
MvaI	CCWGG	1 cut(s)	1078
MwoI	GCNNNNNNNGC	3 cut(s)	778, 787, 796
NdeII	GATC	4 cut(s)	199, 585, 711, 1080
NlaIII	CATG	5 cut(s)	487, 517, 718, 772, 799
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	1086
PcsI	WCGNNNNNNNCGW	2 cut(s)	525, 954
PfeI	GAWTC	4 cut(s)	525, 845, 897, 1098
PflFI	GACNNNGTC	1 cut(s)	1058
PkrI	GCNGC	3 cut(s)	892, 944, 1015
PleI	GAGTC	3 cut(s)	784, 916, 1049
PpsI	GAGTC	3 cut(s)	784, 916, 1049
Ppu21I	YACGTR	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	1076
PspGI	CCWGG	1 cut(s)	1076
PspN4I	GGNNCC	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	585, 1080
PsyI	GACNNNGTC	1 cut(s)	1058
RsaI	GTAC	6 cut(s)	5, 367, 437, 447, 662, 1070
RsaNI	GTAC	6 cut(s)	4, 366, 436, 446, 661, 1069
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	119, 318, 639, 1007
SatI	GCNGC	3 cut(s)	891, 943, 1014
Sau3AI	GATC	4 cut(s)	199, 585, 711, 1080
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	3 cut(s)	785, 917, 1049
ScrFI	CCNGG	1 cut(s)	1078
SduI	GDGCHC	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	1086
SnaBI	TACGTA	1 cut(s)	664
Sse9I	AATT	2 cut(s)	354, 968
SsiI	CCGC	3 cut(s)	396, 581, 891
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	1 cut(s)	872
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	1076
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	365, 950
TaiI	ACGT	3 cut(s)	112, 666, 842
TaqI	TCGA	2 cut(s)	351, 1086
TasI	AATT	2 cut(s)	354, 968
TatI	WGTACW	3 cut(s)	3, 445, 1068
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	4 cut(s)	525, 845, 897, 1098
Tru1I	TTAA	4 cut(s)	119, 318, 639, 1007
Tru9I	TTAA	4 cut(s)	119, 318, 639, 1007
TscAI	CASTG	2 cut(s)	343, 583
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	2 cut(s)	942, 1013
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	304, 968
TspRI	CASTG	2 cut(s)	343, 583
Tth111I	GACNNNGTC	1 cut(s)	1058
XapI	RAATTY	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	1 cut(s)	872
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.