pycom10g09460
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0018704
Physical Location & Seq
Reverse (-)
12542264 .. 12543604
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09460.1

Sequence Viewer

Length: 396 bp
ATGACTACATCTCACAGAAAAAATATATCAACTGCCAATGGTACTTTGGCACCCGTGTGTGGTGCCGGCACTGTGCATCTCACCCCATCACTTCCCTTACATCATTGCTTGCTTGTTCCTTCTTTATCCCATCACTTGTTGTCCCTACCACAGGTTACTGAACAATTGGATTGTGTTGTTCTAATGCATCCGTCCTTTTGTCTACTTCAGGATATTCAGACCAAGGAGATAATTGGGCGTGGCACTAAGAGAGAGGGGTTGTACTATGTGGACAACGTCGTTTCTGGCAGAGCTAATGCAGTTCGAGCGTCCCGGTCTAGTAATTTACAAGAAGTGTGGTTGTTGCATCGTCGGTTAGGGCATGCATCTTTTGGTGATCATAGATGCCGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

9.26

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03940
malus_domestica MD17G1120000.v1.1
pyrus_communis pycom03g19420 pycom10g09460 pycom10g21720 pycom13g28160 pycom14g05170
rosa_chinensis RchiOBHm_Chr3g0491631
rosa_wichuraiana Rw5G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 49, 62
AccI GTMKAC 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 2 cut(s) 43, 263
AfiI CCNNNNNNNGG 2 cut(s) 59, 151
AleI CACNNNNGTG 1 cut(s) 55
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 73, 386
BanI GGYRCC 2 cut(s) 49, 62
BccI CCATC 2 cut(s) 94, 138
BceAI ACGGC 1 cut(s) 372
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 51, 64
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 5 cut(s) 85, 196, 355, 374, 374
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 151
Bse118I RCCGGY 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 59, 151
BseMI GCAATG 1 cut(s) 103
BshNI GGYRCC 2 cut(s) 49, 62
BsiSI CCGG 2 cut(s) 66, 313
BslFI GGGAC 2 cut(s) 127, 295
BslI CCNNNNNNNGG 2 cut(s) 59, 151
BsmFI GGGAC 2 cut(s) 127, 295
Bsp143I GATC 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 51, 64
BspT107I GGYRCC 2 cut(s) 49, 62
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 3 cut(s) 67, 110, 363
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 67, 110, 363
Cfr10I RCCGGY 1 cut(s) 65
CseI GACGC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 42, 262
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 1 cut(s) 362
CviJI RGCY 1 cut(s) 293
CviKI_1 RGCY 1 cut(s) 293
CviQI GTAC 2 cut(s) 42, 262
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 2 cut(s) 189, 367
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 365
FaiI YATR 4 cut(s) 26, 267, 363, 381
FaqI GGGAC 2 cut(s) 127, 295
FatI CATG 1 cut(s) 361
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 202
FokI GGATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 318
HapII CCGG 2 cut(s) 66, 313
HgaI GACGC 1 cut(s) 297
Hin1II CATG 1 cut(s) 365
HpaII CCGG 2 cut(s) 66, 313
HphI GGTGA 2 cut(s) 73, 386
Hpy166II GTNNAC 2 cut(s) 203, 271
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 203, 271
Hpy99I CGWCG 2 cut(s) 281, 354
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 5 cut(s) 76, 187, 299, 346, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 365
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 5 cut(s) 79, 137, 194, 270, 326
LweI GCATC 5 cut(s) 85, 196, 355, 374, 374
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MfeI CAATTG 1 cut(s) 164
MluCI AATT 3 cut(s) 164, 231, 322
MnlI CCTC 1 cut(s) 247
Mph1103I ATGCAT 2 cut(s) 189, 367
MroNI GCCGGC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 55
MspI CCGG 2 cut(s) 66, 313
MspR9I CCNGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 305
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 376
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 2 cut(s) 51, 64
NsiI ATGCAT 2 cut(s) 189, 367
NspI RCATGY 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 55
PaeI GCATGC 1 cut(s) 365
PdiI GCCGGC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 51, 64
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 2 cut(s) 43, 263
RsaNI GTAC 2 cut(s) 42, 262
RseI CAYNNNNRTG 1 cut(s) 55
Sau3AI GATC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 313
SetI ASST 3 cut(s) 156, 279, 295
SfaNI GCATC 5 cut(s) 85, 196, 355, 374, 374
SmiMI CAYNNNNRTG 1 cut(s) 55
SphI GCATGC 1 cut(s) 365
Sse9I AATT 3 cut(s) 164, 231, 322
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 304
TasI AATT 3 cut(s) 164, 231, 322
TatI WGTACW 1 cut(s) 261
TscAI CASTG 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 149
XceI RCATGY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 2 cut(s) 189, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.