pycom13g28160
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
24122690 .. 24123671
982 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28160.1

Sequence Viewer

Length: 342 bp
ATGTGTGGTGCTGTGCTTCTGCAATTGTGCACAGTGTATAATTGCTACTGGTGGTGCCGTGAATTGGTCTTTGTTGTGCAGTGGGTATTGCTGAATATTCAAACAAAGGAGATCATTGGGCATGGCACTAAGAGAGAGGGGCTATATTATGTGGATGACGTGGTTCTTGGAAGAGCTAATTTGGTTCATGTGTCATGTAATAGTAATCTACAGAAGGTATTGTTATTGCATTGTTGTTTGGGGCATGAATCGTTTGGTTATTTGAAACATATATTACTGATAGGAGCATATTCATGCGACTTAATTAGCTTGTTCTCGTGCATTTATGTTGTGTTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

6.92

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03940
malus_domestica MD17G1120000.v1.1
pyrus_communis pycom03g19420 pycom10g09460 pycom10g21720 pycom13g28160 pycom14g05170
rosa_chinensis RchiOBHm_Chr3g0491631
rosa_wichuraiana Rw5G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 101, 265
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 2 cut(s) 176, 309
AluI AGCT 2 cut(s) 176, 309
Alw21I GWGCWC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 54
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 53
BssMI GATC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 209
BstSLI GKGCMC 1 cut(s) 32
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 39, 86
CviAII CATG 5 cut(s) 122, 188, 195, 245, 294
CviJI RGCY 3 cut(s) 142, 176, 309
CviKI_1 RGCY 3 cut(s) 142, 176, 309
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
FaeI CATG 5 cut(s) 125, 191, 198, 248, 297
FatI CATG 5 cut(s) 121, 187, 194, 244, 293
FokI GGATG 1 cut(s) 167
Hin1II CATG 5 cut(s) 125, 191, 198, 248, 297
HinfI GANTC 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 22, 30, 79, 229, 321
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 5 cut(s) 125, 191, 198, 248, 297
Kzo9I GATC 1 cut(s) 111
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 1 cut(s) 34
MaeII ACGT 1 cut(s) 159
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 1 cut(s) 183
MfeI CAATTG 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 5 cut(s) 23, 40, 62, 178, 303
MnlI CCTC 1 cut(s) 130
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 292
MunI CAATTG 1 cut(s) 23
NdeII GATC 1 cut(s) 111
NlaIII CATG 5 cut(s) 125, 191, 198, 248, 297
NlaIV GGNNCC 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 1 cut(s) 111
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 162, 178, 219, 311
SfcI CTRYAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 292
Sse9I AATT 5 cut(s) 23, 40, 62, 178, 303
SspI AATATT 1 cut(s) 97
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 162
TasI AATT 5 cut(s) 23, 40, 62, 178, 303
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 39, 86
TspDTI ATGAA 3 cut(s) 176, 261, 282
TspRI CASTG 2 cut(s) 39, 86
VneI GTGCAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.