RchiOBHm_Chr3g0491631

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
38404434 .. 38405198
765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45459

Sequence Viewer

Length: 252 bp
ATGGCTATAATATTGTGCATCAGTTTTGATTTCGTTGTTAATGTAGTTTTATTTCTTCATGTAAACCTGTCAATACTACTCCTATATATTGTACACAATGTAATTGCACAAATCAATGAGAATCAGTTTCTACATGGTATCAGTAGTCTTGGGTGTCAAGCTTACCTCCTGTGTCGTGTTTCTCCCGTTGTCCAGTTTCTTTTTCCTTTATTTATTTATTTATTTTTTCTCTCTCATGGCTTCCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.49

Weight (kDa)

6.36

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03940
malus_domestica MD17G1120000.v1.1
pyrus_communis pycom03g19420 pycom10g09460 pycom10g21720 pycom13g28160 pycom14g05170
rosa_chinensis RchiOBHm_Chr3g0491631
rosa_wichuraiana Rw5G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 93
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
BmsI GCATC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 193
BstAUI TGTACA 1 cut(s) 91
Csp6I GTAC 1 cut(s) 92
CviAII CATG 3 cut(s) 59, 134, 236
CviJI RGCY 3 cut(s) 5, 161, 240
CviKI_1 RGCY 3 cut(s) 5, 161, 240
CviQI GTAC 1 cut(s) 92
FaeI CATG 3 cut(s) 62, 137, 239
FaiI YATR 6 cut(s) 8, 60, 85, 87, 135, 237
FatI CATG 3 cut(s) 58, 133, 235
Hin1II CATG 3 cut(s) 62, 137, 239
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 64, 94
Hpy8I GTNNAC 2 cut(s) 64, 94
HpyCH4V TGCA 2 cut(s) 18, 107
Hsp92II CATG 3 cut(s) 62, 137, 239
LpnPI CCDG 3 cut(s) 80, 182, 206
LweI GCATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 47
MluCI AATT 1 cut(s) 102
MnlI CCTC 1 cut(s) 176
MseI TTAA 1 cut(s) 39
NlaIII CATG 3 cut(s) 62, 137, 239
PfeI GAWTC 1 cut(s) 121
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 39
SetI ASST 3 cut(s) 69, 163, 168
SfaNI GCATC 1 cut(s) 27
Sse9I AATT 1 cut(s) 102
SspI AATATT 1 cut(s) 12
TasI AATT 1 cut(s) 102
TatI WGTACW 1 cut(s) 91
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.