pycom10g09750

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
12971977 .. 12973177
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
ATGACTGCGAATAACAGGATTATCATCTTTATTGGGCTTTTTCTTACTTTGATATCCACTCGAACTGTAGATGCCTCCGTTGTTTCAACAGGTGACTTCAACAAAGATTTCTTTGTCACATGGTCTCCTGGCCATGTAAACACTTCAGCTGATGGCAAGACAATGAGTTTGAAGCTTGACCAAGAATCCGGTGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGACAAATTGACATGCAGATTAAACTAGTACCAGGCCATTCAGCAGGCACAGTTGTGGCCTATTATTTAACATCTGATCAACCTAACCGTGATGAGGTAGACTATGAGTTCCTTGGCAATGTTGAAGGCAAACCATATATCCTTCAAACAAACATTTTCGCTGACGGGTTGGATGACCGCGAAGAGAGGATCAATCTGTGGTTTGATCCAACAAAGGACTTCCATACCTATTCCATATTATGGAACCTTCACCAAATTGTATTTATGGTGGATTGGGTTCCAATTAGAGTATACAGAAACCATGCAGACAAGGGTGTAGCATTTCCAAGGTGGCAGCCAATGAGCATCAAAGCCAGCCTATGGAACGGCGACAGCTGGGCAACAGGAGGCGGGCGCGACAAAATCGATTGGTCAAAAGGCCCCTTCATAGCTTCATTCAGAAACCACACGATTGATGCCTGTGTTTGGAAGGGAAATGCCAGGTTTTGTAGGGCAGAGAGCCCTACAAACTGGTGGAACGAGGAGAGGTTTAGTACCCTATCAAATGCACAGAGAAGGTTGTTCAAATGGGTTAGGAAGTACCACATGATTTATGACTATTGCGAAGATAAGGAGAGGTTCCAAGGCAACCTTCCAAAGGAGTGTTCTCTACCTAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

296

Amino Acids

34.09

Weight (kDa)

6.66

Isoelectric Point (pI)

28.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 34 - 214 2.6e-60 Glycosyl hydrolases family 16
XET_C PF06955 242 - 290 1.1e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14620
fragaria_vesca FvH4_2g02970
malus_domestica MD10G1112700.v1.1
prunus_persica Prupe.8G152500_v2.0.a1
pyrus_communis pycom10g09750
rosa_chinensis RchiOBHm_Chr6g0247771
rosa_laevigata RLG00000015181
rosa_multiflora Rmu_sc0004057.1_g000004 Rmu_sc0009569.1_g000006
rosa_roxburghii Rroxscaffold_180G00433260 Rroxscaffold_7G00213680
rosa_rugosa Rorug05G0528400
rosa_samantha Rh6BG038100 Rh6DG033900
rosa_wichuraiana Rw6G003770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 465, 585
AccI GTMKAC 2 cut(s) 324, 516
AccII CGCG 2 cut(s) 405, 621
AciI CCGC 2 cut(s) 403, 615
AclWI GGATC 2 cut(s) 422, 425
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 3 cut(s) 255, 760, 806
AfiI CCNNNNNNNGG 5 cut(s) 319, 465, 585, 690, 862
AgsI TTSAA 7 cut(s) 87, 100, 172, 207, 350, 371, 790
AhlI ACTAGT 1 cut(s) 250
AjnI CCWGG 3 cut(s) 127, 256, 704
AjuI GAANNNNNNNTTGG 4 cut(s) 840, 853, 872, 885
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 4 cut(s) 149, 175, 600, 656
AluI AGCT 4 cut(s) 149, 175, 600, 656
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 2 cut(s) 422, 425
AoxI GGCC 4 cut(s) 130, 259, 282, 643
ApeKI GCWGC 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 2 cut(s) 104, 467
BalI TGGCCA 1 cut(s) 132
BanII GRGCYC 1 cut(s) 728
BbvI GCAGC 1 cut(s) 571
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 3 cut(s) 129, 258, 706
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 3 cut(s) 129, 258, 706
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 4 cut(s) 470, 504, 646, 845
BmrFI CCNGG 3 cut(s) 129, 258, 706
BmsI GCATC 3 cut(s) 61, 579, 670
Bsa29I ATCGAT 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 337, 551, 847
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 5 cut(s) 319, 465, 585, 690, 862
Bse1I ACTGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 3 cut(s) 129, 258, 706
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 3 cut(s) 337, 551, 847
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 5 cut(s) 319, 465, 585, 690, 862
BseMI GCAATG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 1 cut(s) 571
BseYI CCCAGC 1 cut(s) 600
Bsh1236I CGCG 2 cut(s) 405, 621
BshFI GGCC 4 cut(s) 132, 261, 284, 645
BshVI ATCGAT 1 cut(s) 630
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 5 cut(s) 319, 465, 585, 690, 862
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 4 cut(s) 132, 261, 284, 645
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 3 cut(s) 301, 414, 430
BspACI CCGC 2 cut(s) 403, 615
BspANI GGCC 4 cut(s) 132, 261, 284, 645
BspDI ATCGAT 1 cut(s) 630
BspFNI CGCG 2 cut(s) 405, 621
BspLI GGNNCC 4 cut(s) 470, 504, 646, 845
BspPI GGATC 2 cut(s) 422, 425
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 337, 551, 847
BssMI GATC 3 cut(s) 301, 414, 430
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 3 cut(s) 337, 551, 847
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 3 cut(s) 129, 258, 706
Bst4CI ACNGT 3 cut(s) 67, 277, 314
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 271, 580, 617
BstENI CCTNNNNNAGG 1 cut(s) 860
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 405, 621
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 3 cut(s) 304, 417, 433
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 301, 414, 430
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 3 cut(s) 129, 258, 706
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 3 cut(s) 127, 256, 704
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 2 cut(s) 405, 621
BstV1I GCAGC 1 cut(s) 571
BstZ17I GTATAC 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 4 cut(s) 132, 261, 284, 645
BsuTUI ATCGAT 1 cut(s) 630
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 271, 580, 617
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 644
ClaI ATCGAT 1 cut(s) 630
Csp6I GTAC 3 cut(s) 254, 759, 805
CviAII CATG 5 cut(s) 120, 134, 238, 527, 811
CviQI GTAC 3 cut(s) 254, 759, 805
DpnI GATC 3 cut(s) 303, 416, 432
DpnII GATC 3 cut(s) 301, 414, 430
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 3 cut(s) 337, 551, 847
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 860
EcoO109I RGGNCCY 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 127, 256, 704
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 3 cut(s) 337, 551, 847
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 3 cut(s) 337, 551, 847
FaeI CATG 5 cut(s) 123, 137, 241, 530, 814
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FatI CATG 5 cut(s) 119, 133, 237, 526, 810
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 2 cut(s) 324, 516
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 620
GluI GCNGC 1 cut(s) 560
GsaI CCCAGC 1 cut(s) 604
HaeIII GGCC 4 cut(s) 132, 261, 284, 645
HapII CCGG 1 cut(s) 189
HhaI GCGC 1 cut(s) 621
Hin1II CATG 5 cut(s) 123, 137, 241, 530, 814
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 189
HphI GGTGA 2 cut(s) 104, 467
Hpy166II GTNNAC 3 cut(s) 139, 325, 517
Hpy188I TCNGA 2 cut(s) 301, 665
Hpy8I GTNNAC 3 cut(s) 139, 325, 517
HpyAV CCTTC 7 cut(s) 344, 377, 482, 658, 688, 774, 866
HpyCH4III ACNGT 3 cut(s) 67, 277, 314
HpyCH4V TGCA 3 cut(s) 241, 530, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92II CATG 5 cut(s) 123, 137, 241, 530, 814
HspAI GCGC 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 301, 414, 430
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 3 cut(s) 61, 579, 670
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 92, 115
MalI GATC 3 cut(s) 303, 416, 432
MboI GATC 3 cut(s) 301, 414, 430
MboII GAAGA 2 cut(s) 419, 842
MhlI GDGCHC 1 cut(s) 728
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 3 cut(s) 231, 480, 507
MluNI TGGCCA 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 375, 458
MnlI CCTC 7 cut(s) 85, 313, 405, 605, 739, 744, 834
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
MseI TTAA 2 cut(s) 246, 293
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 2 cut(s) 149, 600
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 129, 258, 706
MvaI CCWGG 3 cut(s) 129, 258, 706
MvnI CGCG 2 cut(s) 405, 621
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 301, 414, 430
NlaIII CATG 5 cut(s) 123, 137, 241, 530, 814
NlaIV GGNNCC 4 cut(s) 470, 504, 646, 845
NmuCI GTSAC 2 cut(s) 92, 115
NspI RCATGY 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 278
PfeI GAWTC 1 cut(s) 185
PflMI CCANNNNNTGG 2 cut(s) 465, 585
PkrI GCNGC 1 cut(s) 561
Psp6I CCWGG 3 cut(s) 127, 256, 704
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 3 cut(s) 127, 256, 704
PspN4I GGNNCC 4 cut(s) 470, 504, 646, 845
PspPI GGNCC 1 cut(s) 644
PvuII CAGCTG 2 cut(s) 149, 600
RsaI GTAC 3 cut(s) 255, 760, 806
RsaNI GTAC 3 cut(s) 254, 759, 805
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 246, 293
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 3 cut(s) 301, 414, 430
Sau96I GGNCC 1 cut(s) 644
ScrFI CCNGG 3 cut(s) 129, 258, 706
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 3 cut(s) 61, 579, 670
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 250
Sse9I AATT 3 cut(s) 231, 480, 507
SsiI CCGC 2 cut(s) 403, 615
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 127, 256, 704
StyI CCWWGG 3 cut(s) 337, 551, 847
TaaI ACNGT 3 cut(s) 67, 277, 314
TaqI TCGA 2 cut(s) 61, 630
TasI AATT 3 cut(s) 231, 480, 507
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 246, 293
Tru9I TTAA 2 cut(s) 246, 293
TseFI GTSAC 2 cut(s) 92, 115
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 2 cut(s) 92, 115
TspDTI ATGAA 2 cut(s) 640, 648
TspGWI ACGGA 1 cut(s) 67
Van91I CCANNNNNTGG 2 cut(s) 465, 585
XagI CCTNNNNNAGG 1 cut(s) 860
XceI RCATGY 1 cut(s) 241
XmiI GTMKAC 2 cut(s) 324, 516
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.