pycom10g11360

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013460
Physical Location & Seq
Reverse (-)
14910505 .. 14911485
981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGGCAGATCAGTACCCGAAAGCAAGTCAGACGCAATCAAAGGGAGCAGAAGAAGAAGCTCAAGGTTGTGGGATATTTGATTTCTTGAAGAAGAAGGACAGTGAAGAGAAACCCCACCAGGAGCAAGAGCAGCACAAGCACACTACTCTAGCTGAAAAGCTCCACCACCATGGCGGTGACTCTAGCTCGGGCAAGATCAAGGAGAAGGTATCAGGCAACAAGGAAGAGGGAGATGCTTACCATGCATCCGTTCCAGCAAAGAAGGGACACAGTGGTGAGAAGGGATTTGTAGAGAAAATTAAAGACAAGCTTCCGGGACAGCACAAGGAGGCCGAAAATGTTGCTGAGGAGAAAGGATTTGTAGAGAAAATCAAGGACAAGCTTCCGGGACAGCACAAAGTGGCTGAGCATGGTGCTAGGGAGAAGGGATTCGTCGAGAAGATCAAAGAAAAGCTTCCGGGACAGCACAAGGAGGCTGGACATGGAGCTCATGTGGAGTATCACACTCCGGATGGGCATTCCCACGACAGCGAGCCAAAGAAAGGGGTCTTGGAAAATATTAAGGACAAGCTACCTGGGGGTCACAAGAAAGAAGAGGAGAAGCACAAGGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

206

Amino Acids

22.81

Weight (kDa)

6.84

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 138 - 195 3.3e-11 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38410
fragaria_vesca FvH4_2g16030
malus_domestica MD05G1129100.v1.1 MD10G1132400.v1.1
prunus_persica Prupe.8G173200_v2.0.a1
pyrus_communis pycom05g12570 pycom10g11360
rosa_chinensis RchiOBHm_Chr6g0279611
rosa_laevigata RLG00000013133
rosa_multiflora Rmu_sc0004010.1_g000005 Rmu_sc0004649.1_g000005
rosa_roxburghii Rroxscaffold_7G00188790
rosa_rugosa Rorug06G0126400
rosa_samantha Rh6AG234700 Rh6BG239200 Rh6CG241200 Rh6DG232700
rosa_wichuraiana Rw6G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 2 cut(s) 117, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 9 cut(s) 59, 152, 160, 186, 310, 382, 454, 488, 571
AluI AGCT 9 cut(s) 59, 152, 160, 186, 310, 382, 454, 488, 571
Alw21I GWGCWC 1 cut(s) 490
Ama87I CYCGRG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 130
Asp700I GAANNNNTTC 2 cut(s) 428, 453
AsuC2I CCSGG 3 cut(s) 315, 387, 459
AsuHPI GGTGA 2 cut(s) 188, 287
AvaI CYCGRG 1 cut(s) 187
BanII GRGCYC 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 490
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 506
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 2 cut(s) 119, 576
BcnI CCSGG 3 cut(s) 315, 387, 459
BfaI CTAG 3 cut(s) 149, 183, 417
BisI GCNGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 5 cut(s) 119, 315, 387, 459, 576
BmeT110I CYCGRG 1 cut(s) 187
BmrFI CCNGG 5 cut(s) 119, 315, 387, 459, 576
BmsI GCATC 2 cut(s) 223, 254
Bpu10I CCTNAGC 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 3 cut(s) 315, 387, 459
BsaJI CCNNGG 2 cut(s) 169, 575
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 542
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 2 cut(s) 119, 576
BseDI CCNNGG 2 cut(s) 169, 575
BseGI GGATG 2 cut(s) 245, 517
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 336, 396
BseRI GAGGAG 2 cut(s) 362, 611
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 314, 386, 458, 509
BslFI GGGAC 4 cut(s) 279, 330, 402, 474
BslI CCNNNNNNNGG 1 cut(s) 542
BsmFI GGGAC 4 cut(s) 279, 330, 402, 474
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 490
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 3 cut(s) 7, 195, 441
Bsp1720I GCTNAGC 1 cut(s) 405
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 2 cut(s) 337, 397
BspEI TCCGGA 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 169, 575
BssMI GATC 3 cut(s) 7, 195, 441
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 119, 576
Bst4CI ACNGT 2 cut(s) 101, 272
Bst6I CTCTTC 3 cut(s) 99, 219, 588
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 345, 405
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 245, 517
BstKTI GATC 3 cut(s) 10, 198, 444
BstMBI GATC 3 cut(s) 7, 195, 441
BstMWI GCNNNNNNNGC 3 cut(s) 130, 136, 242
BstNI CCWGG 2 cut(s) 119, 576
BstSCI CCNGG 5 cut(s) 117, 313, 385, 457, 574
BstV1I GCAGC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 245, 517
BtsIMutI CAGTG 2 cut(s) 106, 277
Cac8I GCNNGC 1 cut(s) 533
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 13
CviAII CATG 5 cut(s) 170, 242, 410, 482, 491
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 345, 405
DpnI GATC 3 cut(s) 9, 197, 443
DpnII GATC 3 cut(s) 7, 195, 441
DraIII CACNNNGTG 1 cut(s) 400
Eam1104I CTCTTC 3 cut(s) 99, 219, 588
EarI CTCTTC 3 cut(s) 99, 219, 588
Ecl136II GAGCTC 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 117, 574
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 5 cut(s) 173, 245, 413, 485, 494
FaiI YATR 5 cut(s) 171, 243, 411, 483, 492
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 438, 470
FaqI GGGAC 4 cut(s) 279, 330, 402, 474
FatI CATG 5 cut(s) 169, 241, 409, 481, 490
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 2 cut(s) 232, 524
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 3 cut(s) 149, 183, 417
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 332
HapII CCGG 4 cut(s) 314, 386, 458, 509
HgaI GACGC 1 cut(s) 40
Hin1II CATG 5 cut(s) 173, 245, 413, 485, 494
HindIII AAGCTT 3 cut(s) 308, 380, 452
HinfI GANTC 2 cut(s) 179, 429
HpaII CCGG 4 cut(s) 314, 386, 458, 509
HphI GGTGA 2 cut(s) 188, 287
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 85, 436, 509
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 5 cut(s) 88, 199, 256, 274, 418
HpyCH4III ACNGT 2 cut(s) 101, 272
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 136, 242
HpyF3I CTNAG 2 cut(s) 345, 405
Hsp92II CATG 5 cut(s) 173, 245, 413, 485, 494
Kpn2I TCCGGA 1 cut(s) 508
Kzo9I GATC 3 cut(s) 7, 195, 441
LmnI GCTCC 4 cut(s) 44, 121, 165, 485
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 223, 254
MaeI CTAG 3 cut(s) 149, 183, 417
MaeIII GTNAC 2 cut(s) 176, 581
MalI GATC 3 cut(s) 9, 197, 443
MboI GATC 3 cut(s) 7, 195, 441
MboII GAAGA 8 cut(s) 62, 65, 100, 103, 116, 236, 451, 605
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 5 cut(s) 220, 322, 340, 466, 589
Mph1103I ATGCAT 1 cut(s) 247
MroI TCCGGA 1 cut(s) 508
MroXI GAANNNNTTC 2 cut(s) 428, 453
MseI TTAA 2 cut(s) 300, 561
MslI CAYNNNNRTG 3 cut(s) 168, 174, 273
MspI CCGG 4 cut(s) 314, 386, 458, 509
MspR9I CCNGG 5 cut(s) 119, 315, 387, 459, 576
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 2 cut(s) 119, 576
MwoI GCNNNNNNNGC 3 cut(s) 130, 136, 242
NciI CCSGG 3 cut(s) 315, 387, 459
NcoI CCATGG 1 cut(s) 169
NdeII GATC 3 cut(s) 7, 195, 441
NlaIII CATG 5 cut(s) 173, 245, 413, 485, 494
NmuCI GTSAC 2 cut(s) 176, 581
NsiI ATGCAT 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 273
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 2 cut(s) 428, 453
PfeI GAWTC 1 cut(s) 429
PfoI TCCNGGA 3 cut(s) 313, 385, 457
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 117, 574
PspGI CCWGG 2 cut(s) 117, 574
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 3 cut(s) 168, 174, 273
SacI GAGCTC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 300, 561
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 3 cut(s) 7, 195, 441
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 5 cut(s) 119, 315, 387, 459, 576
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 2 cut(s) 223, 254
SmiMI CAYNNNNRTG 3 cut(s) 168, 174, 273
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 174
SspI AATATT 1 cut(s) 559
SspMI CTAG 3 cut(s) 149, 183, 417
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 5 cut(s) 117, 313, 385, 457, 574
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 101, 272
TaqI TCGA 1 cut(s) 435
TasI AATT 1 cut(s) 297
TfiI GAWTC 1 cut(s) 429
Tru1I TTAA 2 cut(s) 300, 561
Tru9I TTAA 2 cut(s) 300, 561
TscAI CASTG 2 cut(s) 106, 277
TseFI GTSAC 2 cut(s) 176, 581
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 2 cut(s) 176, 581
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 106, 277
XmnI GAANNNNTTC 2 cut(s) 428, 453
XspI CTAG 3 cut(s) 149, 183, 417
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.