Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Reverse (-)

16687981 .. 16688781

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGATTACGAACTTTTCATACCATATTCTTCTCTATTTGCTTGTTTTGTGCATTTGCATTGCAGAATCTCAAGATCCCTTGGGAGATTTTTGCAACAAGGATAGCACTAAAATAAGTAATGGCAGTCAAATATCACAAAATATCGATAGCTTGTTGGCTGAATTGGTTCCAAAAACTGCCTCAACCGGTTTTTTGGCTACCTCCTATGGGATGAACGAAGACCAAGTCTATGGCCTGGCTCAATGCAGAGGTGACGTTGTGGGCACCAAAGACTGCTCAACTTGCATCCAAGATGCCGCAAAGCAAATTCGCCAGCGCTGTCCGAACCAAGCCGACGCACGAATTTGGTATGATTATTGCTTCTTGAGGTACAGTGACAAGAGCTTCATTGGGGAAGTTGATACATCTTATGGTATATTTTACTACAATGTTAATAATGTGACCGACCCCGAGAACTTTAACAAGGAACTAGGAGCTCTGGCGGATAAGATTAGGGCACAAGCTGTTGTGCCGAAGAGTGGAGGGCTTGGGAAAGGTCAGACAAAGCTATCACCATTTGTGACACTATATGCCCTAGTGCAGTGCACAAGGGACTTGCCTCAGCTAGGCTGCGCTCAGTGCTTGTCCATTGCAGTGGGAAATTTCCCAACTTTTTGCAACAACAGAAAGGGATGTAGAGTTTTGTATAGTAGCTGCTATGTTAGATATGAGCTCTATCCATTTTTCTTCCCTCTTGATTCAAACAATACCCTGCAGGCCGTGGATGAAAATAATGTAATGGTTATAGTTTATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

267

Amino Acids

29.62

Weight (kDa)

5.49

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	32 - 127	3e-25	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 239	1.2e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	2 cut(s)	300, 485
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	3 cut(s)	309, 345, 643
AfaI	GTAC	1 cut(s)	374
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	210, 521, 608
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	744
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	8 cut(s)	153, 387, 479, 506, 550, 607, 696, 715
AluI	AGCT	8 cut(s)	153, 387, 479, 506, 550, 607, 696, 715
Alw21I	GWGCWC	3 cut(s)	481, 590, 717
Alw44I	GTGCAC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	452
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	2 cut(s)	235, 759
ApaLI	GTGCAC	1 cut(s)	586
ApeKI	GCWGC	2 cut(s)	612, 696
ApoI	RAATTY	3 cut(s)	309, 345, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AsiGI	ACCGGT	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	321, 617
AsuHPI	GGTGA	2 cut(s)	266, 546
AvaI	CYCGRG	1 cut(s)	452
BaeGI	GKGCMC	3 cut(s)	269, 502, 590
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	481, 717
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	3 cut(s)	481, 590, 717
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	599, 683
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	1 cut(s)	239
BfaI	CTAG	3 cut(s)	473, 578, 608
BfmI	CTRYAG	1 cut(s)	755
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	3 cut(s)	300, 613, 697
BlsI	GCNGC	3 cut(s)	301, 614, 698
Bme1390I	CCNGG	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	171, 268
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	286, 297
BpiI	GAAGAC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	57, 388
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	81, 762
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 521, 608
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	60, 630
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	81, 762
BseGI	GGATG	4 cut(s)	219, 288, 680, 772
BseLI	CCNNNNNNNGG	3 cut(s)	210, 521, 608
BseMI	GCAATG	2 cut(s)	60, 630
BseMII	CTCAG	2 cut(s)	617, 632
BseSI	GKGCMC	3 cut(s)	269, 502, 590
BseXI	GCAGC	2 cut(s)	599, 683
BsgI	GTGCAG	1 cut(s)	602
BshFI	GGCC	2 cut(s)	237, 761
BshNI	GGYRCC	1 cut(s)	266
BshTI	ACCGGT	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	3 cut(s)	481, 590, 717
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	3 cut(s)	210, 521, 608
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	237, 761
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	5 cut(s)	269, 481, 502, 590, 717
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	2 cut(s)	300, 485
BspANI	GGCC	2 cut(s)	237, 761
BspCNI	CTCAG	2 cut(s)	616, 631
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	171, 268
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	60, 630
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	81, 762
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	317, 759
BstDEI	CTNAG	2 cut(s)	603, 618
BstDSI	CCRYGG	1 cut(s)	762
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	4 cut(s)	219, 288, 680, 772
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	321, 617
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 621
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	755
BstSLI	GKGCMC	3 cut(s)	269, 502, 590
BstV1I	GCAGC	2 cut(s)	599, 683
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	2 cut(s)	233, 637
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	237, 761
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	762
BtsCI	GGATG	4 cut(s)	219, 288, 680, 772
BtsI	GCAGTG	2 cut(s)	590, 642
BtsIMutI	CAGTG	4 cut(s)	382, 590, 626, 642
Cac8I	GCNNGC	2 cut(s)	317, 759
CfoI	GCGC	2 cut(s)	321, 617
Cfr10I	RCCGGY	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	373
CspAI	ACCGGT	1 cut(s)	188
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	603, 618
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	500
Ecl136II	GAGCTC	2 cut(s)	479, 715
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	2 cut(s)	481, 717
Eco47III	AGCGCT	1 cut(s)	320
Eco53kI	GAGCTC	2 cut(s)	479, 715
Eco88I	CYCGRG	1 cut(s)	452
EcoICRI	GAGCTC	2 cut(s)	479, 715
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	481, 717
ErhI	CCWWGG	1 cut(s)	81
FaqI	GGGAC	1 cut(s)	608
Fnu4HI	GCNGC	3 cut(s)	300, 613, 697
FokI	GGATG	4 cut(s)	226, 275, 687, 779
FriOI	GRGCYC	2 cut(s)	481, 717
Fsp4HI	GCNGC	3 cut(s)	300, 613, 697
FspBI	CTAG	3 cut(s)	473, 578, 608
GlaI	GCGC	2 cut(s)	320, 616
GluI	GCNGC	3 cut(s)	300, 613, 697
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	237, 761
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	2 cut(s)	321, 617
Hin6I	GCGC	2 cut(s)	319, 615
HinP1I	GCGC	2 cut(s)	319, 615
HinfI	GANTC	2 cut(s)	68, 740
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	266, 546
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	2 cut(s)	327, 543
Hpy188III	TCNNGA	3 cut(s)	74, 367, 737
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 621
HpyF3I	CTNAG	2 cut(s)	603, 618
HpySE526I	ACGT	1 cut(s)	258
HspAI	GCGC	2 cut(s)	319, 615
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	7 cut(s)	202, 224, 251, 329, 467, 743, 767
Lsp1109I	GCAGC	2 cut(s)	599, 683
LweI	GCATC	2 cut(s)	286, 297
MaeI	CTAG	3 cut(s)	473, 578, 608
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	254, 377, 442, 562
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	5 cut(s)	16, 23, 233, 529, 721
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	5 cut(s)	269, 481, 502, 590, 717
MluCI	AATT	4 cut(s)	164, 309, 345, 643
MnlI	CCTC	7 cut(s)	193, 214, 245, 363, 518, 612, 744
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	435, 462
MslI	CAYNNNNRTG	1 cut(s)	635
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	285, 621
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	171, 268
NmuCI	GTSAC	4 cut(s)	254, 377, 442, 562
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	68, 740
PflFI	GACNNNGTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	301, 614, 698
Psp124BI	GAGCTC	2 cut(s)	481, 717
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	171, 268
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	759
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	2 cut(s)	481, 717
SaqAI	TTAA	2 cut(s)	435, 462
SatI	GCNGC	3 cut(s)	300, 613, 697
Sau3AI	GATC	1 cut(s)	76
SbfI	CCTGCAGG	1 cut(s)	759
ScrFI	CCNGG	1 cut(s)	239
SdaI	CCTGCAGG	1 cut(s)	759
SduI	GDGCHC	5 cut(s)	269, 481, 502, 590, 717
SfaNI	GCATC	2 cut(s)	286, 297
SfcI	CTRYAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	72, 367
SmoI	CTYRAG	2 cut(s)	72, 367
Sse8387I	CCTGCAGG	1 cut(s)	759
Sse9I	AATT	4 cut(s)	164, 309, 345, 643
SsiI	CCGC	2 cut(s)	300, 485
SspMI	CTAG	3 cut(s)	473, 578, 608
SstI	GAGCTC	2 cut(s)	481, 717
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	4 cut(s)	164, 309, 345, 643
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	68, 740
Tru1I	TTAA	2 cut(s)	435, 462
Tru9I	TTAA	2 cut(s)	435, 462
TscAI	CASTG	4 cut(s)	382, 590, 626, 642
TseFI	GTSAC	4 cut(s)	254, 377, 442, 562
TseI	GCWGC	2 cut(s)	612, 696
Tsp45I	GTSAC	4 cut(s)	254, 377, 442, 562
TspDTI	ATGAA	5 cut(s)	9, 17, 230, 379, 783
TspRI	CASTG	4 cut(s)	382, 590, 626, 642
Tth111I	GACNNNGTC	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	586
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	3 cut(s)	309, 345, 643
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	3 cut(s)	473, 578, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.