Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008838

Physical Location & Seq

Genomic Coordinates Forward (+)

17012403 .. 17013786

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTGCTACGCGTATGGATGCGGTTCAGTACGAGAGCTATGGCAGAGGGCCTTTTGGTTTAAAGCATGTTAAGGTTGCAATCCGCACTATCTGTATTCCGCCAAGGGGATTTGTAGCATGTCCCTTGGGGTTTAGAACAAATAGTAGAGTTCATATAGTTGTGTTTGGTTTAGATTTTAGCGGAGACTTGGTTTTATATGATCCGGTGTCATACCACGTCAAGTATACTGGAATCAAGATGCATCGTTCTGACCTTCCTTATGTCGATGCTTATACAAAGATGGTTGTGTTCCTTCTCAAACTCATCTTCTTCGCATTGAGCTTCATATTGAACTTGGTTACGCGCTTGATCTTGTCCACGATGGCTCATCTTCTCATGTTACTGATCCAGGGATTAAGAGCACCAGGCCAGGGCATCCATGGCACGTTACAACTAGTCATAGAGGTCATCAGGTCATGTTCCGAGTACTTTGTGGGACTTGTAATGGAAGCAATAAGTGCTATAATCTCCACTTTCTTTGATTTTCTAAAAGGAAGTGTAGCAGGTTCTGCTGGCGTTACCATTTCTGCGGTTGTAGAACTTGTCGAGAGAACAAAGACTACGCTTGAATCGCTCGATGGGTTGCTTACTGATTATCCGGAGATTTCCGAAGGGTTTTTCGAGATGGTTTATAGTATTGTGAATGATATGTGGAATAATTACAAGGATGCGTTTGGATATGTTACAGAGAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.36

Weight (kDa)

6.3

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18250 FvH4_2g18301
malus_domestica	MD05G1166900.v1.1 MD10G1156800.v1.1
prunus_persica	Prupe.8G195200_v2.0.a1 Prupe.8G195400_v2.0.a1
pyrus_communis	pycom10g13500
rosa_chinensis	RchiOBHm_Chr6g0283621 RchiOBHm_Chr6g0283651
rosa_laevigata	RLG00000012808 RLG00000012812
rosa_multiflora	Rmu_sc0002906.1_g000012 Rmu_sc0005719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00185340
rosa_rugosa	Rorug06G0156200
rosa_samantha	Rh6AG268000 Rh6AG268300 Rh6BG270500 Rh6BG270800 Rh6CG270300 Rh6CG270700 Rh6DG264000 Rh6DG264300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	2 cut(s)	13, 346
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	5 cut(s)	23, 85, 101, 183, 572
AclWI	GGATC	2 cut(s)	197, 382
AfaI	GTAC	2 cut(s)	32, 470
AfiI	CCNNNNNNNGG	2 cut(s)	107, 413
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	334, 611
AhlI	ACTAGT	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	3 cut(s)	390, 406, 411
AluBI	AGCT	2 cut(s)	39, 324
AluI	AGCT	2 cut(s)	39, 324
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	197, 382
AlwNI	CAGNNNCTG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	2 cut(s)	50, 409
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	406
BccI	CCATC	4 cut(s)	277, 358, 614, 661
BciT130I	CCWGG	3 cut(s)	392, 408, 413
BcoDI	GTCTC	1 cut(s)	180
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	3 cut(s)	392, 408, 413
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	3 cut(s)	392, 408, 413
BmsI	GCATC	6 cut(s)	10, 231, 253, 259, 426, 700
BsaJI	CCNNGG	5 cut(s)	104, 126, 391, 412, 421
BsaWI	WCCGGW	2 cut(s)	205, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 413
Bse1I	ACTGG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	3 cut(s)	392, 408, 413
BseDI	CCNNGG	5 cut(s)	104, 126, 391, 412, 421
BseGI	GGATG	3 cut(s)	25, 417, 715
BseLI	CCNNNNNNNGG	2 cut(s)	107, 413
BseNI	ACTGG	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	13, 346
BshFI	GGCC	2 cut(s)	52, 411
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	206, 641
BslFI	GGGAC	2 cut(s)	108, 492
BslI	CCNNNNNNNGG	2 cut(s)	107, 413
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	108, 492
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	52, 411
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	3 cut(s)	202, 351, 387
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	5 cut(s)	23, 85, 101, 183, 572
BspANI	GGCC	2 cut(s)	52, 411
BspEI	TCCGGA	1 cut(s)	640
BspFNI	CGCG	2 cut(s)	13, 346
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	197, 382
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	5 cut(s)	104, 126, 391, 412, 421
BssMI	GATC	3 cut(s)	202, 351, 387
BssNAI	GTATAC	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	104, 126, 421
Bst1107I	GTATAC	1 cut(s)	228
Bst2UI	CCWGG	3 cut(s)	392, 408, 413
BstAPI	GCANNNNNTGC	2 cut(s)	500, 551
BstC8I	GCNNGC	1 cut(s)	556
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	3 cut(s)	25, 417, 715
BstFNI	CGCG	2 cut(s)	13, 346
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	205, 354, 390
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	3 cut(s)	202, 351, 387
BstMWI	GCNNNNNNNGC	4 cut(s)	423, 500, 551, 613
BstNI	CCWGG	3 cut(s)	392, 408, 413
BstNSI	RCATGY	2 cut(s)	71, 123
BstSCI	CCNGG	3 cut(s)	390, 406, 411
BstUI	CGCG	2 cut(s)	13, 346
BstZ17I	GTATAC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	52, 411
BtgI	CCRYGG	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	25, 417, 715
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	31, 469
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	5 cut(s)	68, 120, 379, 422, 459
CviJI	RGCY	6 cut(s)	5, 39, 52, 324, 368, 411
CviKI_1	RGCY	6 cut(s)	5, 39, 52, 324, 368, 411
CviQI	GTAC	2 cut(s)	31, 469
DpnI	GATC	3 cut(s)	204, 353, 389
DpnII	GATC	3 cut(s)	202, 351, 387
DraI	TTTAAA	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	3 cut(s)	104, 126, 421
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	390, 406, 411
EcoT14I	CCWWGG	3 cut(s)	104, 126, 421
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	3 cut(s)	104, 126, 421
FaeI	CATG	5 cut(s)	71, 123, 382, 425, 462
FaqI	GGGAC	2 cut(s)	108, 492
FatI	CATG	5 cut(s)	67, 119, 378, 421, 458
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	32, 404, 722
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	52, 411
HapII	CCGG	2 cut(s)	206, 641
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	71, 123, 382, 425, 462
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	234, 611
HpaII	CCGG	2 cut(s)	206, 641
Hpy166II	GTNNAC	2 cut(s)	228, 360
Hpy188I	TCNGA	3 cut(s)	253, 466, 652
Hpy188III	TCNNGA	4 cut(s)	238, 589, 641, 664
Hpy8I	GTNNAC	2 cut(s)	228, 360
HpyAV	CCTTC	3 cut(s)	266, 305, 647
HpyCH4IV	ACGT	2 cut(s)	219, 428
HpyCH4V	TGCA	2 cut(s)	80, 244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	423, 500, 551, 613
HpySE526I	ACGT	2 cut(s)	219, 428
Hsp92II	CATG	5 cut(s)	71, 123, 382, 425, 462
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	640
Kzo9I	GATC	3 cut(s)	202, 351, 387
LweI	GCATC	6 cut(s)	10, 231, 253, 259, 426, 700
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	219, 428
MaeIII	GTNAC	5 cut(s)	340, 381, 429, 559, 724
MalI	GATC	3 cut(s)	204, 353, 389
MboI	GATC	3 cut(s)	202, 351, 387
MboII	GAAGA	3 cut(s)	301, 304, 365
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	700
MluI	ACGCGT	1 cut(s)	11
MnlI	CCTC	2 cut(s)	41, 439
Mph1103I	ATGCAT	1 cut(s)	246
MroI	TCCGGA	1 cut(s)	640
MseI	TTAA	3 cut(s)	62, 72, 398
MspI	CCGG	2 cut(s)	206, 641
MspR9I	CCNGG	3 cut(s)	392, 408, 413
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	3 cut(s)	392, 408, 413
MvnI	CGCG	2 cut(s)	13, 346
MwoI	GCNNNNNNNGC	4 cut(s)	423, 500, 551, 613
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	3 cut(s)	202, 351, 387
NlaIII	CATG	5 cut(s)	71, 123, 382, 425, 462
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	2 cut(s)	71, 123
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	234, 611
PkrI	GCNGC	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	390, 406, 411
PspGI	CCWGG	3 cut(s)	390, 406, 411
PspPI	GGNCC	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	586, 618
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	32, 470
RsaNI	GTAC	2 cut(s)	31, 469
SaqAI	TTAA	3 cut(s)	62, 72, 398
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	202, 351, 387
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	470
ScrFI	CCNGG	3 cut(s)	392, 408, 413
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	9 cut(s)	41, 78, 222, 258, 326, 431, 450, 458, 550
SfaNI	GCATC	6 cut(s)	10, 231, 253, 259, 426, 700
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	1 cut(s)	700
SsiI	CCGC	5 cut(s)	23, 85, 101, 183, 572
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	3 cut(s)	390, 406, 411
StyI	CCWWGG	3 cut(s)	104, 126, 421
TaiI	ACGT	2 cut(s)	222, 431
TaqI	TCGA	4 cut(s)	267, 588, 618, 663
TasI	AATT	1 cut(s)	700
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	234, 611
Tru1I	TTAA	3 cut(s)	62, 72, 398
Tru9I	TTAA	3 cut(s)	62, 72, 398
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	143, 316
XceI	RCATGY	2 cut(s)	71, 123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.