Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0018797

Physical Location & Seq

Genomic Coordinates Forward (+)

17040816 .. 17041316

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATCAGCCATGGCGGCGAAGCTTATGCATGCGGTTCAGTACGACAGCTATGGCGGAGGAGCAGCTGGTTTGAAGCAGTGTTTAATTTGATTTTCATGCATGTTGAGGTTCCGATTCCCGCCCCGAAGAAGAATGAGGTTTTGCTGAAATTGGAAGCAGCTAGTCTCAATCCAGTTGATTGGAAAATTCAGAAAGGCGAGCTGCGGCCTCTTTTCCCCAGAAAATTCCCTCAAATACCTGGTAATTCAGTTTTTCATGTTATTTGTGATCTTATTGTACTTGTTGAACATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

8.71

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18260 FvH4_2g18300
malus_domestica	MD05G1167100.v1.1
pyrus_communis	pycom10g13560
rosa_multiflora	Rmu_co8075528.1_g000001 Rmu_sc0001521.1_g000008 Rmu_sc0001521.1_g000010 Rmu_sc0002906.1_g000001 Rmu_sc0023365.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	15, 33, 55, 120, 205
AcsI	RAATTY	2 cut(s)	186, 224
AfaI	GTAC	2 cut(s)	42, 279
AgsI	TTSAA	2 cut(s)	74, 287
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	5 cut(s)	23, 49, 66, 161, 202
AluI	AGCT	5 cut(s)	23, 49, 66, 161, 202
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	63, 158, 202
ApoI	RAATTY	2 cut(s)	186, 224
BbvI	GCAGC	3 cut(s)	75, 170, 189
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	5 cut(s)	16, 64, 159, 203, 206
BlsI	GCNGC	5 cut(s)	17, 65, 160, 204, 207
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	10
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	75, 170, 189
BshFI	GGCC	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	3, 268
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	5 cut(s)	15, 33, 55, 120, 205
BspANI	GGCC	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	3, 268
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	31, 200
BstDSI	CCRYGG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	6, 271
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	3, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	33, 104
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	75, 170, 189
BstXI	CCANNNNNNTGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	31, 200
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	41, 278
CviAII	CATG	5 cut(s)	11, 30, 97, 101, 257
CviJI	RGCY	7 cut(s)	9, 23, 49, 66, 161, 202, 208
CviKI_1	RGCY	7 cut(s)	9, 23, 49, 66, 161, 202, 208
CviQI	GTAC	2 cut(s)	41, 278
DpnI	GATC	2 cut(s)	5, 270
DpnII	GATC	2 cut(s)	3, 268
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	2 cut(s)	31, 102
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	5 cut(s)	14, 33, 100, 104, 260
FaiI	YATR	7 cut(s)	12, 27, 31, 52, 98, 102, 258
FatI	CATG	5 cut(s)	10, 29, 96, 100, 256
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	16, 64, 159, 203, 206
Fsp4HI	GCNGC	5 cut(s)	16, 64, 159, 203, 206
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	5 cut(s)	16, 64, 159, 203, 206
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	5 cut(s)	14, 33, 100, 104, 260
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	114, 192
HpyCH4V	TGCA	2 cut(s)	29, 100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	14, 33, 100, 104, 260
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 268
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	52, 186, 225, 232, 252
Lsp1109I	GCAGC	3 cut(s)	75, 170, 189
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	1 cut(s)	162
MalI	GATC	2 cut(s)	5, 270
MboI	GATC	2 cut(s)	3, 268
MboII	GAAGA	2 cut(s)	139, 142
MluCI	AATT	5 cut(s)	85, 149, 186, 224, 244
MnlI	CCTC	5 cut(s)	51, 100, 130, 219, 240
Mph1103I	ATGCAT	2 cut(s)	31, 102
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	2 cut(s)	3, 268
NlaIII	CATG	5 cut(s)	14, 33, 100, 104, 260
NlaIV	GGNNCC	1 cut(s)	111
NsiI	ATGCAT	2 cut(s)	31, 102
NspI	RCATGY	2 cut(s)	33, 104
PaeI	GCATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	17, 65, 160, 204, 207
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	2 cut(s)	42, 279
RsaNI	GTAC	2 cut(s)	41, 278
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	5 cut(s)	16, 64, 159, 203, 206
Sau3AI	GATC	2 cut(s)	3, 268
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	8 cut(s)	25, 51, 68, 111, 141, 163, 204, 241
SexAI	ACCWGGT	1 cut(s)	238
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	85, 149, 186, 224, 244
SsiI	CCGC	5 cut(s)	15, 33, 55, 120, 205
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	10
TasI	AATT	5 cut(s)	85, 149, 186, 224, 244
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	2 cut(s)	18, 208
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	3 cut(s)	63, 158, 202
TspDTI	ATGAA	2 cut(s)	85, 245
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	2 cut(s)	186, 224
XceI	RCATGY	2 cut(s)	33, 104
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	31, 102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.