Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Reverse (-)

17357894 .. 17358853

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATTAATCCAAATGACCCCGAAGAGAATCCAGACATCCTCTCTGACACATCTGCATCATCTCCTCCAAAAGTTAGACCGGAACAGGAAAAACCAGTACATGAACGGAGAAGAAGCAGGGAGGATAATGACCTAAGATTTGCCAACTCCCCAGCCCAGCGCAGAACTTCTGGTGAATCAGCACATCAACCTAACAGAGGCCGTGGGGTTAGTTCTGGTGAAACCCATCGAAGACCTGCACGACCAAGTGGTGGGTCTGAGAACAGCGTTGAACGTTCACCTCTCCATCGCAATGCAAGGGTCTCAGGAAGAGATTCACCCTCCTGGGAAGGAAAGGCATCATATGAAAGTAGCCATGGCACTCCTGCAAGATCCCGCCTCAAACCTCGCGATGAAAGTCCTGAGAAAGGTGCTGCTGTTCCCAAATTTGGCGAGTGGGATGAGAACGACCCAGCATCAGCTGATGGTTTCACTCATATATTCAACAAAGTGCGGGAGGAGAGGGCGGGAAAAGTACCAGGGACTCCTTCTCAGCCGTCTTACCAAGATGCAAGGAAGCAGGGTTCCAATGACAGGGCCAAGAGTTGCTGCTTTCCATGGGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

204

Amino Acids

22.5

Weight (kDa)

9.54

Isoelectric Point (pI)

72.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	135 - 168	6.5e-21	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccII	CGCG	1 cut(s)	390
AciI	CCGC	3 cut(s)	376, 493, 506
AclI	AACGTT	1 cut(s)	274
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	2 cut(s)	99, 516
AfiI	CCNNNNNNNGG	5 cut(s)	197, 251, 407, 428, 573
AgsI	TTSAA	2 cut(s)	272, 484
AjnI	CCWGG	2 cut(s)	323, 517
AloI	GAACNNNNNNTCC	2 cut(s)	547, 579
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	2 cut(s)	199, 576
ApeKI	GCWGC	2 cut(s)	413, 588
ApoI	RAATTY	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	4 cut(s)	185, 230, 270, 309
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	400, 575
BccI	CCATC	3 cut(s)	234, 294, 458
BceAI	ACGGC	2 cut(s)	186, 520
BciT130I	CCWGG	2 cut(s)	325, 519
BcoDI	GTCTC	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	414, 589
BlsI	GCNGC	2 cut(s)	415, 590
Bme1390I	CCNGG	2 cut(s)	325, 519
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	325, 519
BmsI	GCATC	4 cut(s)	65, 347, 464, 538
BpiI	GAAGAC	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	5 cut(s)	202, 324, 355, 518, 596
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 251, 407, 428, 573
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	325, 519
BseDI	CCNNGG	5 cut(s)	202, 324, 355, 518, 596
BseGI	GGATG	2 cut(s)	36, 445
BseLI	CCNNNNNNNGG	5 cut(s)	197, 251, 407, 428, 573
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	4 cut(s)	249, 318, 393, 545
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	54, 512
BseXI	GCAGC	2 cut(s)	400, 575
BseYI	CCCAGC	3 cut(s)	151, 156, 451
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	201, 578
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	5 cut(s)	197, 251, 407, 428, 573
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	201, 578
Bso31I	GGTCTC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	371
Bsp19I	CCATGG	2 cut(s)	355, 596
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	3 cut(s)	376, 493, 506
BspANI	GGCC	2 cut(s)	201, 578
BspCNI	CTCAG	4 cut(s)	250, 317, 394, 544
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	5 cut(s)	202, 324, 355, 518, 596
BssMI	GATC	1 cut(s)	371
BssT1I	CCWWGG	2 cut(s)	355, 596
Bst2UI	CCWGG	2 cut(s)	325, 519
Bst6I	CTCTTC	2 cut(s)	18, 304
BstDEI	CTNAG	5 cut(s)	134, 258, 304, 402, 531
BstDSI	CCRYGG	3 cut(s)	202, 355, 596
BstENI	CCTNNNNNAGG	2 cut(s)	195, 405
BstF5I	GGATG	2 cut(s)	36, 445
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	325, 519
BstSCI	CCNGG	2 cut(s)	323, 517
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	400, 575
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	201, 578
BtgI	CCRYGG	3 cut(s)	202, 355, 596
BtgZI	GCGATG	2 cut(s)	272, 405
BtsCI	GGATG	2 cut(s)	36, 445
BtuMI	TCGCGA	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	98, 515
CviAII	CATG	3 cut(s)	101, 356, 597
CviJI	RGCY	6 cut(s)	155, 201, 354, 461, 535, 578
CviKI_1	RGCY	6 cut(s)	155, 201, 354, 461, 535, 578
CviQI	GTAC	2 cut(s)	98, 515
DdeI	CTNAG	5 cut(s)	134, 258, 304, 402, 531
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eam1104I	CTCTTC	2 cut(s)	18, 304
EarI	CTCTTC	2 cut(s)	18, 304
Eco130I	CCWWGG	2 cut(s)	355, 596
Eco31I	GGTCTC	1 cut(s)	307
EcoNI	CCTNNNNNAGG	2 cut(s)	195, 405
EcoRII	CCWGG	2 cut(s)	323, 517
EcoT14I	CCWWGG	2 cut(s)	355, 596
ErhI	CCWWGG	2 cut(s)	355, 596
FaeI	CATG	3 cut(s)	104, 359, 600
FaiI	YATR	7 cut(s)	102, 343, 345, 357, 477, 479, 598
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	100, 355, 596
FauI	CCCGC	3 cut(s)	383, 486, 499
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	414, 589
FokI	GGATG	2 cut(s)	23, 452
Fsp4HI	GCNGC	2 cut(s)	414, 589
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	414, 589
GsaI	CCCAGC	3 cut(s)	155, 160, 455
HaeIII	GGCC	2 cut(s)	201, 578
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	104, 359, 600
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	28, 176, 314, 523
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	4 cut(s)	185, 230, 270, 309
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	46, 259
Hpy188III	TCNNGA	4 cut(s)	32, 306, 389, 401
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	323, 537
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	56, 239, 296, 368, 551
HpyF3I	CTNAG	5 cut(s)	134, 258, 304, 402, 531
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	104, 359, 600
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	371
Lsp1109I	GCAGC	2 cut(s)	400, 575
LweI	GCATC	4 cut(s)	65, 347, 464, 538
MaeII	ACGT	1 cut(s)	274
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	4 cut(s)	35, 123, 243, 321
MflI	RGATCY	1 cut(s)	371
MluCI	AATT	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	313
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	325, 519
MvaI	CCWGG	2 cut(s)	325, 519
MvnI	CGCG	1 cut(s)	390
NcoI	CCATGG	2 cut(s)	355, 596
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	104, 359, 600
NlaIV	GGNNCC	1 cut(s)	565
NruI	TCGCGA	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	28, 176, 314
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	415, 590
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	6
Psp1406I	AACGTT	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	323, 517
PspFI	CCCAGC	3 cut(s)	151, 156, 451
PspGI	CCWGG	2 cut(s)	323, 517
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	461
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	2 cut(s)	99, 516
RsaNI	GTAC	2 cut(s)	98, 515
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	414, 589
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	325, 519
SetI	ASST	8 cut(s)	135, 193, 238, 277, 283, 388, 412, 463
SfaNI	GCATC	4 cut(s)	65, 347, 464, 538
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	3 cut(s)	376, 493, 506
StyD4I	CCNGG	2 cut(s)	323, 517
StyI	CCWWGG	2 cut(s)	355, 596
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	425
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	3 cut(s)	28, 176, 314
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	2 cut(s)	413, 588
TspDTI	ATGAA	3 cut(s)	117, 360, 408
TspGWI	ACGGA	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	6
XagI	CCTNNNNNAGG	2 cut(s)	195, 405
XapI	RAATTY	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.